Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001848

Physical Location & Seq

Genomic Coordinates Forward (+)

4717331 .. 4720934

Gene Structure 3604 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16416

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGCAAAAGCGTTTACACATCGTTCTGCTGCCACTGTTCCTTTGTGTATTGGTTAACACTATCTTGATCTCTTATTCTTATTCAGATTGTTGGAACAGTGTGCAGTCAGGTTGTTCAACTGCTTTGAATTCAGTTATGGCTCCAAAGACGAGGTGGACAAGAAGTAAGAGATTGTTACAGGAGTATGAAGATGAAAATCATAATGCTGAAAGGGAAGTCCTAGAAATATCTAATGACCAAATTGTAATTGGTAGTATATCTGAAACTGGAACCGCAGTTTCTGGTAGGGACGAAGACCATCAAATTCATCCAAGATCAAGGCGTGCATCTGAGTTGAGGATGAGAAAAAGGGACCGACATTTAGACACTCAATACAGTGCTGGGAATGATGATGCCAGTCGATTTCAACAATGTCGCAAGAGATTTATAAGCAATCAACAAAACACTGCTGCAATTTCAAATCAAAGTTTTTCTGGGACCTCACAATGTTTAGACAGAGGCAGTTCTTCTCAACTTCCGAACAGTGATGAAGTTGAAGGTCAATCGTCGCATCGTTTTGGTCAGGCAGTGTATCAAAAAAGTAGAGAAGGATTGATCGTCACGTATGAAGATTCAGGTGATAATAATCATGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

211

Amino Acids

23.93

Weight (kDa)

6.65

Isoelectric Point (pI)

51.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001848)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0344671 RchiOBHm_Chr2g0103891 RchiOBHm_Chr2g0125481 RchiOBHm_Chr2g0127991 RchiOBHm_Chr4g0404361 RchiOBHm_Chr6g0293921 RchiOBHm_Chr7g0183991 RchiOBHm_Chr7g0200701 RchiOBHm_Chr7g0203451 RchiOBHm_Chr7g0233851
rosa_laevigata	RLG00000009445
rosa_multiflora	Rmu_sc0001762.1_g000048 Rmu_ssc0000198.1_g000001
rosa_roxburghii	Rroxscaffold_176G00431470 Rroxscaffold_1G00006800 Rroxscaffold_1G00038540 Rroxscaffold_1G00072610 Rroxscaffold_2G00078350 Rroxscaffold_2G00079900 Rroxscaffold_2G00125220 Rroxscaffold_3G00246630 Rroxscaffold_4G00306170 Rroxscaffold_4G00314800 Rroxscaffold_4G00317460 Rroxscaffold_4G00319930 Rroxscaffold_5G00343110 Rroxscaffold_6G00395760 Rroxscaffold_6G00421380 Rroxscaffold_7G00160650
rosa_rugosa	Rorug01G0217800 Rorug03G0274300 Rorug04G0088400 Rorug05G0172900 Rorug07G0221500
rosa_samantha	Rh1BG311700 Rh1DG110800 Rh2AG655300 Rh2BG324100 Rh2BG414100 Rh2DG254900 Rh3DG077200 Rh4BG304400 Rh5DG244400 Rh7BG056200
rosa_wichuraiana	Rw1G008450 Rw2G032850 Rw4G008300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	428
AciI	CCGC	1 cut(s)	273
AcsI	RAATTY	2 cut(s)	127, 303
AgsI	TTSAA	5 cut(s)	117, 127, 407, 459, 536
AlwNI	CAGNNNCTG	1 cut(s)	281
ApeKI	GCWGC	2 cut(s)	28, 449
ApoI	RAATTY	2 cut(s)	127, 303
AspS9I	GGNCC	2 cut(s)	352, 477
AsuHPI	GGTGA	1 cut(s)	629
AvaII	GGWCC	2 cut(s)	352, 477
BbsI	GAAGAC	1 cut(s)	300
BbvI	GCAGC	2 cut(s)	15, 436
BccI	CCATC	1 cut(s)	306
BfaI	CTAG	1 cut(s)	221
BisI	GCNGC	2 cut(s)	29, 450
BlsI	GCNGC	2 cut(s)	30, 451
Bme18I	GGWCC	2 cut(s)	352, 477
BmgT120I	GGNCC	2 cut(s)	352, 477
BmiI	GGNNCC	4 cut(s)	141, 271, 353, 478
BmsI	GCATC	3 cut(s)	335, 382, 559
BpiI	GAAGAC	1 cut(s)	300
BsaAI	YACGTR	1 cut(s)	603
BsaBI	GATNNNNATC	2 cut(s)	195, 624
Bse1I	ACTGG	2 cut(s)	271, 396
Bse8I	GATNNNNATC	2 cut(s)	195, 624
BseGI	GGATG	2 cut(s)	307, 345
BseJI	GATNNNNATC	2 cut(s)	195, 624
BseMII	CTCAG	1 cut(s)	321
BseNI	ACTGG	2 cut(s)	271, 396
BseXI	GCAGC	2 cut(s)	15, 436
BseYI	CCCAGC	1 cut(s)	380
BsgI	GTGCAG	1 cut(s)	122
BslFI	GGGAC	3 cut(s)	302, 365, 490
BsmFI	GGGAC	3 cut(s)	302, 365, 490
Bsp143I	GATC	3 cut(s)	66, 314, 594
BspACI	CCGC	1 cut(s)	273
BspCNI	CTCAG	1 cut(s)	322
BspLI	GGNNCC	4 cut(s)	141, 271, 353, 478
BsrI	ACTGG	2 cut(s)	271, 396
BssMI	GATC	3 cut(s)	66, 314, 594
Bst4CI	ACNGT	4 cut(s)	36, 98, 377, 524
BstBAI	YACGTR	1 cut(s)	603
BstC8I	GCNNGC	1 cut(s)	324
BstDEI	CTNAG	1 cut(s)	330
BstF5I	GGATG	2 cut(s)	307, 345
BstKTI	GATC	3 cut(s)	69, 317, 597
BstMBI	GATC	3 cut(s)	66, 314, 594
BstV1I	GCAGC	2 cut(s)	15, 436
BstV2I	GAAGAC	1 cut(s)	300
BtsCI	GGATG	2 cut(s)	307, 345
BtsI	GCAGTG	2 cut(s)	444, 573
BtsIMutI	CAGTG	6 cut(s)	32, 103, 382, 444, 529, 573
Cac8I	GCNNGC	1 cut(s)	324
CaiI	CAGNNNCTG	1 cut(s)	281
Cfr13I	GGNCC	2 cut(s)	352, 477
CviAII	CATG	1 cut(s)	629
CviJI	RGCY	1 cut(s)	140
CviKI_1	RGCY	1 cut(s)	140
DdeI	CTNAG	1 cut(s)	330
DpnI	GATC	3 cut(s)	68, 316, 596
DpnII	GATC	3 cut(s)	66, 314, 594
Eco47I	GGWCC	2 cut(s)	352, 477
EcoO109I	RGGNCCY	1 cut(s)	477
EcoRI	GAATTC	1 cut(s)	127
FaeI	CATG	1 cut(s)	632
FaiI	YATR	8 cut(s)	137, 186, 201, 257, 428, 606, 630, 634
FaqI	GGGAC	3 cut(s)	302, 365, 490
FatI	CATG	1 cut(s)	628
Fnu4HI	GCNGC	2 cut(s)	29, 450
FokI	GGATG	2 cut(s)	294, 352
Fsp4HI	GCNGC	2 cut(s)	29, 450
FspBI	CTAG	1 cut(s)	221
GluI	GCNGC	2 cut(s)	29, 450
GsaI	CCCAGC	1 cut(s)	384
Hin1II	CATG	1 cut(s)	632
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HinfI	GANTC	1 cut(s)	611
HpaI	GTTAAC	1 cut(s)	55
HphI	GGTGA	1 cut(s)	629
Hpy166II	GTNNAC	3 cut(s)	14, 55, 156
Hpy188I	TCNGA	4 cut(s)	85, 262, 331, 519
Hpy188III	TCNNGA	1 cut(s)	64
Hpy8I	GTNNAC	3 cut(s)	14, 55, 156
Hpy99I	CGWCG	1 cut(s)	550
HpyAV	CCTTC	2 cut(s)	530, 581
HpyCH4III	ACNGT	4 cut(s)	36, 98, 377, 524
HpyCH4IV	ACGT	1 cut(s)	602
HpyCH4V	TGCA	4 cut(s)	4, 103, 326, 452
HpyF3I	CTNAG	1 cut(s)	330
HpySE526I	ACGT	1 cut(s)	602
Hsp92II	CATG	1 cut(s)	632
KspAI	GTTAAC	1 cut(s)	55
Kzo9I	GATC	3 cut(s)	66, 314, 594
LmnI	GCTCC	1 cut(s)	145
LpnPI	CCDG	9 cut(s)	93, 164, 252, 267, 366, 409, 459, 548, 600
Lsp1109I	GCAGC	2 cut(s)	15, 436
LweI	GCATC	3 cut(s)	335, 382, 559
MaeI	CTAG	1 cut(s)	221
MaeII	ACGT	1 cut(s)	602
MaeIII	GTNAC	2 cut(s)	174, 598
MalI	GATC	3 cut(s)	68, 316, 596
MboI	GATC	3 cut(s)	66, 314, 594
MboII	GAAGA	4 cut(s)	200, 305, 498, 620
MluCI	AATT	5 cut(s)	127, 240, 246, 303, 453
MmeI	TCCRAC	1 cut(s)	71
MnlI	CCTC	4 cut(s)	144, 330, 490, 491
MseI	TTAA	1 cut(s)	54
NdeII	GATC	3 cut(s)	66, 314, 594
NlaIII	CATG	1 cut(s)	632
NlaIV	GGNNCC	4 cut(s)	141, 271, 353, 478
NmuCI	GTSAC	1 cut(s)	598
PfeI	GAWTC	1 cut(s)	611
PkrI	GCNGC	2 cut(s)	30, 451
Ppu21I	YACGTR	1 cut(s)	603
PpuMI	RGGWCCY	1 cut(s)	477
PsiI	TTATAA	1 cut(s)	428
Psp5II	RGGWCCY	1 cut(s)	477
PspFI	CCCAGC	1 cut(s)	380
PspN4I	GGNNCC	4 cut(s)	141, 271, 353, 478
PspPI	GGNCC	2 cut(s)	352, 477
PspPPI	RGGWCCY	1 cut(s)	477
PstNI	CAGNNNCTG	1 cut(s)	281
SaqAI	TTAA	1 cut(s)	54
SatI	GCNGC	2 cut(s)	29, 450
Sau3AI	GATC	3 cut(s)	66, 314, 594
Sau96I	GGNCC	2 cut(s)	352, 477
SetI	ASST	6 cut(s)	112, 155, 482, 541, 605, 619
SfaNI	GCATC	3 cut(s)	335, 382, 559
SinI	GGWCC	2 cut(s)	352, 477
Sse9I	AATT	5 cut(s)	127, 240, 246, 303, 453
SsiI	CCGC	1 cut(s)	273
SspMI	CTAG	1 cut(s)	221
TaaI	ACNGT	4 cut(s)	36, 98, 377, 524
TaiI	ACGT	1 cut(s)	605
TaqI	TCGA	1 cut(s)	400
TaqII	GACCGA	1 cut(s)	369
TasI	AATT	5 cut(s)	127, 240, 246, 303, 453
TfiI	GAWTC	1 cut(s)	611
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TscAI	CASTG	6 cut(s)	39, 103, 382, 451, 529, 573
TseFI	GTSAC	1 cut(s)	598
TseI	GCWGC	2 cut(s)	28, 449
Tsp45I	GTSAC	1 cut(s)	598
TspDTI	ATGAA	5 cut(s)	201, 207, 296, 543, 621
TspRI	CASTG	6 cut(s)	39, 103, 382, 451, 529, 573
VpaK11BI	GGWCC	2 cut(s)	352, 477
XapI	RAATTY	2 cut(s)	127, 303
XcmI	CCANNNNNNNNNTGG	2 cut(s)	150, 245
XspI	CTAG	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.