Rroxscaffold_1G00038540

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
56002033 .. 56005911
3879 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00038540.1

Sequence Viewer

Length: 240 bp
ATGGCACAGAGAATCCAATGGACAAGAACAAAAAGGTTGTTAGAAGAAAATCATGATGAAGGTCAAGGTACTGAAAAAAGAATGGAAGAGGTCTGCGATGGTAATAGTTTTTCTGCCTCAGTAACTGAAGCTGAAAGGACTTTTTCTACTAGAGGAACAAATTCCAAAATTCAATCAAGAAGCTGGAAACAAACATCTGAACCAGCAATCACAAAAAATAGTCAGCGTACTCAAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

79

Amino Acids

9.12

Weight (kDa)

9.42

Isoelectric Point (pI)

51.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 160, 168
AcuI CTGAAG 1 cut(s) 147
AfaI GTAC 2 cut(s) 70, 229
AgsI TTSAA 1 cut(s) 173
AluBI AGCT 2 cut(s) 131, 183
AluI AGCT 2 cut(s) 131, 183
AlwNI CAGNNNCTG 1 cut(s) 125
ApoI RAATTY 2 cut(s) 160, 168
Asp700I GAANNNNTTC 1 cut(s) 160
BccI CCATC 1 cut(s) 92
BfaI CTAG 1 cut(s) 150
BseMII CTCAG 1 cut(s) 132
BspCNI CTCAG 1 cut(s) 131
BspHI TCATGA 1 cut(s) 52
Bst6I CTCTTC 1 cut(s) 81
BstDEI CTNAG 1 cut(s) 118
BtgZI GCGATG 1 cut(s) 111
CaiI CAGNNNCTG 1 cut(s) 125
CciI TCATGA 1 cut(s) 52
Csp6I GTAC 2 cut(s) 69, 228
CviAII CATG 1 cut(s) 53
CviJI RGCY 2 cut(s) 131, 183
CviKI_1 RGCY 2 cut(s) 131, 183
CviQI GTAC 2 cut(s) 69, 228
DdeI CTNAG 1 cut(s) 118
Eam1104I CTCTTC 1 cut(s) 81
EarI CTCTTC 1 cut(s) 81
Eco57I CTGAAG 1 cut(s) 147
FaeI CATG 1 cut(s) 56
FaiI YATR 1 cut(s) 54
FatI CATG 1 cut(s) 52
FspBI CTAG 1 cut(s) 150
Hin1II CATG 1 cut(s) 56
HinfI GANTC 1 cut(s) 12
Hpy188I TCNGA 1 cut(s) 199
Hpy188III TCNNGA 2 cut(s) 53, 177
HpyAV CCTTC 1 cut(s) 53
HpyF3I CTNAG 1 cut(s) 118
Hsp92II CATG 1 cut(s) 56
LpnPI CCDG 2 cut(s) 169, 216
MaeI CTAG 1 cut(s) 150
MaeIII GTNAC 1 cut(s) 121
MboII GAAGA 2 cut(s) 56, 98
MluCI AATT 2 cut(s) 160, 168
MnlI CCTC 3 cut(s) 82, 127, 146
MroXI GAANNNNTTC 1 cut(s) 160
NlaIII CATG 1 cut(s) 56
PagI TCATGA 1 cut(s) 52
PdmI GAANNNNTTC 1 cut(s) 160
PfeI GAWTC 1 cut(s) 12
PstNI CAGNNNCTG 1 cut(s) 125
RsaI GTAC 2 cut(s) 70, 229
RsaNI GTAC 2 cut(s) 69, 228
SetI ASST 6 cut(s) 38, 64, 70, 93, 133, 185
SgeI CNNG 7 cut(s) 36, 65, 77, 162, 189, 196, 215
Sse9I AATT 2 cut(s) 160, 168
SspMI CTAG 1 cut(s) 150
TasI AATT 2 cut(s) 160, 168
TfiI GAWTC 1 cut(s) 12
TspDTI ATGAA 1 cut(s) 72
XapI RAATTY 2 cut(s) 160, 168
XmnI GAANNNNTTC 1 cut(s) 160
XspI CTAG 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.