Rorug01G0217800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001848
Physical Location & Seq
Reverse (-)
31154301 .. 31154861
561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0217800.1

Sequence Viewer

Length: 306 bp
ATGCAGGCGGAGGAGGAGGAGCAGCAGCACAAGGAAAATGGCGGCAACTATCGGACCCTCATGCCCGACACTCACTTTTTGTGGGCCGGAGCCAGCGCGGCCCAGTTCGGCTGGGCGGTAGTCTTGTACCGGAAAGGATCCGGCTCCCACTCCACTTCCATGCCTTTCAGGGCTTTCGCTGTCGCATCCCTCTTCGTCGGCGCCGGCGCCACCGCCGCCTTCGCTGGCCTCCGTGCTTCTGGTATCCACAAGATTAAAACTAGCAGAGCAGTTTGGAATGCTATATATGACAGTACTGATAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

10.88

Weight (kDa)

8.14

Isoelectric Point (pI)

35.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 200, 206
AccII CGCG 1 cut(s) 98
AciI CCGC 6 cut(s) 8, 42, 98, 116, 213, 216
AclWI GGATC 2 cut(s) 132, 145
AcyI GRCGYC 2 cut(s) 201, 207
AfaI GTAC 2 cut(s) 128, 295
AluBI AGCT 1 cut(s) 303
AluI AGCT 1 cut(s) 303
AlwI GGATC 2 cut(s) 132, 145
AoxI GGCC 3 cut(s) 84, 99, 226
ApeKI GCWGC 2 cut(s) 22, 25
AspLEI GCGC 3 cut(s) 98, 203, 209
AspS9I GGNCC 3 cut(s) 54, 84, 100
AvaII GGWCC 1 cut(s) 54
BamHI GGATCC 1 cut(s) 137
BanI GGYRCC 2 cut(s) 200, 206
BbvI GCAGC 2 cut(s) 34, 37
BciVI GTATCC 1 cut(s) 254
BfaI CTAG 2 cut(s) 261, 304
BfoI RGCGCY 2 cut(s) 204, 210
BfuI GTATCC 1 cut(s) 254
BglI GCCNNNNNGGC 1 cut(s) 98
BisI GCNGC 5 cut(s) 23, 26, 43, 99, 216
BlsI GCNGC 5 cut(s) 24, 27, 44, 100, 217
BmcAI AGTACT 1 cut(s) 295
Bme18I GGWCC 1 cut(s) 54
BmgT120I GGNCC 3 cut(s) 54, 84, 100
BmiI GGNNCC 6 cut(s) 56, 91, 139, 145, 202, 208
BmrI ACTGGG 1 cut(s) 97
BmsI GCATC 1 cut(s) 194
BmuI ACTGGG 1 cut(s) 97
BsaHI GRCGYC 2 cut(s) 201, 207
BsaWI WCCGGW 1 cut(s) 129
Bse118I RCCGGY 1 cut(s) 203
Bse1I ACTGG 1 cut(s) 103
BseGI GGATG 1 cut(s) 185
BseNI ACTGG 1 cut(s) 103
BseRI GAGGAG 3 cut(s) 26, 29, 32
BseXI GCAGC 2 cut(s) 34, 37
BseYI CCCAGC 1 cut(s) 111
Bsh1236I CGCG 1 cut(s) 98
BshFI GGCC 3 cut(s) 86, 101, 228
BshNI GGYRCC 2 cut(s) 200, 206
BsiSI CCGG 4 cut(s) 87, 130, 141, 204
BsmI GAATGC 1 cut(s) 283
BsnI GGCC 3 cut(s) 86, 101, 228
Bsp143I GATC 1 cut(s) 137
BspACI CCGC 6 cut(s) 8, 42, 98, 116, 213, 216
BspANI GGCC 3 cut(s) 86, 101, 228
BspFNI CGCG 1 cut(s) 98
BspLI GGNNCC 6 cut(s) 56, 91, 139, 145, 202, 208
BspPI GGATC 2 cut(s) 132, 145
BspT107I GGYRCC 2 cut(s) 200, 206
BsrFI RCCGGY 1 cut(s) 203
BsrI ACTGG 1 cut(s) 103
BssAI RCCGGY 1 cut(s) 203
BssMI GATC 1 cut(s) 137
BssNI GRCGYC 2 cut(s) 201, 207
Bst4CI ACNGT 1 cut(s) 293
Bst6I CTCTTC 1 cut(s) 197
BstACI GRCGYC 2 cut(s) 201, 207
BstC8I GCNNGC 4 cut(s) 6, 94, 205, 226
BstF5I GGATG 1 cut(s) 185
BstFNI CGCG 1 cut(s) 98
BstH2I RGCGCY 2 cut(s) 204, 210
BstHHI GCGC 3 cut(s) 98, 203, 209
BstKTI GATC 1 cut(s) 140
BstMBI GATC 1 cut(s) 137
BstMWI GCNNNNNNNGC 3 cut(s) 98, 215, 221
BstUI CGCG 1 cut(s) 98
BstV1I GCAGC 2 cut(s) 34, 37
BstX2I RGATCY 1 cut(s) 137
BstYI RGATCY 1 cut(s) 137
BsuI GTATCC 1 cut(s) 254
BsuRI GGCC 3 cut(s) 86, 101, 228
BtsCI GGATG 1 cut(s) 185
Cac8I GCNNGC 4 cut(s) 6, 94, 205, 226
CfoI GCGC 3 cut(s) 98, 203, 209
Cfr10I RCCGGY 1 cut(s) 203
Cfr13I GGNCC 3 cut(s) 54, 84, 100
Csp6I GTAC 2 cut(s) 127, 294
CviAII CATG 2 cut(s) 61, 160
CviJI RGCY 8 cut(s) 86, 92, 101, 111, 144, 173, 228, 303
CviKI_1 RGCY 8 cut(s) 86, 92, 101, 111, 144, 173, 228, 303
CviQI GTAC 2 cut(s) 127, 294
DinI GGCGCC 2 cut(s) 202, 208
DpnI GATC 1 cut(s) 139
DpnII GATC 1 cut(s) 137
Eam1104I CTCTTC 1 cut(s) 197
EarI CTCTTC 1 cut(s) 197
EciI GGCGGA 1 cut(s) 23
Eco47I GGWCC 1 cut(s) 54
EgeI GGCGCC 2 cut(s) 202, 208
EheI GGCGCC 2 cut(s) 202, 208
FaeI CATG 2 cut(s) 64, 163
FaiI YATR 5 cut(s) 62, 161, 284, 286, 288
FatI CATG 2 cut(s) 60, 159
Fnu4HI GCNGC 5 cut(s) 23, 26, 43, 99, 216
FokI GGATG 1 cut(s) 172
Fsp4HI GCNGC 5 cut(s) 23, 26, 43, 99, 216
FspBI CTAG 2 cut(s) 261, 304
GlaI GCGC 3 cut(s) 97, 202, 208
GluI GCNGC 5 cut(s) 23, 26, 43, 99, 216
GsaI CCCAGC 1 cut(s) 115
HaeII RGCGCY 2 cut(s) 204, 210
HaeIII GGCC 3 cut(s) 86, 101, 228
HapII CCGG 4 cut(s) 87, 130, 141, 204
HhaI GCGC 3 cut(s) 98, 203, 209
Hin1I GRCGYC 2 cut(s) 201, 207
Hin1II CATG 2 cut(s) 64, 163
Hin6I GCGC 3 cut(s) 96, 201, 207
HinP1I GCGC 3 cut(s) 96, 201, 207
HpaII CCGG 4 cut(s) 87, 130, 141, 204
Hpy188I TCNGA 1 cut(s) 54
Hpy99I CGWCG 1 cut(s) 200
HpyAV CCTTC 1 cut(s) 229
HpyCH4III ACNGT 1 cut(s) 293
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 3 cut(s) 98, 215, 221
Hsp92I GRCGYC 2 cut(s) 201, 207
Hsp92II CATG 2 cut(s) 64, 163
HspAI GCGC 3 cut(s) 96, 201, 207
KasI GGCGCC 2 cut(s) 200, 206
KroI GCCGGC 1 cut(s) 203
KroNI GCCGGC 1 cut(s) 205
Kzo9I GATC 1 cut(s) 137
LmnI GCTCC 3 cut(s) 19, 89, 149
Lsp1109I GCAGC 2 cut(s) 34, 37
LweI GCATC 1 cut(s) 194
MaeI CTAG 2 cut(s) 261, 304
MalI GATC 1 cut(s) 139
MboI GATC 1 cut(s) 137
MboII GAAGA 1 cut(s) 184
MflI RGATCY 1 cut(s) 137
Mly113I GGCGCC 2 cut(s) 201, 207
MnlI CCTC 6 cut(s) 4, 7, 10, 68, 200, 239
MreI CGCCGGCG 1 cut(s) 203
MroNI GCCGGC 1 cut(s) 203
MseI TTAA 1 cut(s) 255
MslI CAYNNNNRTG 1 cut(s) 158
MspI CCGG 4 cut(s) 87, 130, 141, 204
Mva1269I GAATGC 1 cut(s) 283
MvnI CGCG 1 cut(s) 98
MwoI GCNNNNNNNGC 3 cut(s) 98, 215, 221
NaeI GCCGGC 1 cut(s) 205
NarI GGCGCC 2 cut(s) 201, 207
NdeII GATC 1 cut(s) 137
NgoMIV GCCGGC 1 cut(s) 203
NlaIII CATG 2 cut(s) 64, 163
NlaIV GGNNCC 6 cut(s) 56, 91, 139, 145, 202, 208
PctI GAATGC 1 cut(s) 283
PdiI GCCGGC 1 cut(s) 205
PkrI GCNGC 5 cut(s) 24, 27, 44, 100, 217
PluTI GGCGCC 2 cut(s) 204, 210
PspFI CCCAGC 1 cut(s) 111
PspN4I GGNNCC 6 cut(s) 56, 91, 139, 145, 202, 208
PspPI GGNCC 3 cut(s) 54, 84, 100
PsuI RGATCY 1 cut(s) 137
RsaI GTAC 2 cut(s) 128, 295
RsaNI GTAC 2 cut(s) 127, 294
RseI CAYNNNNRTG 1 cut(s) 158
SaqAI TTAA 1 cut(s) 255
SatI GCNGC 5 cut(s) 23, 26, 43, 99, 216
Sau3AI GATC 1 cut(s) 137
Sau96I GGNCC 3 cut(s) 54, 84, 100
ScaI AGTACT 1 cut(s) 295
SetI ASST 1 cut(s) 305
SfaNI GCATC 1 cut(s) 194
SfoI GGCGCC 2 cut(s) 202, 208
SgrAI CRCCGGYG 1 cut(s) 203
SinI GGWCC 1 cut(s) 54
SmiMI CAYNNNNRTG 1 cut(s) 158
SsiI CCGC 6 cut(s) 8, 42, 98, 116, 213, 216
SspDI GGCGCC 2 cut(s) 200, 206
SspMI CTAG 2 cut(s) 261, 304
TaaI ACNGT 1 cut(s) 293
TatI WGTACW 1 cut(s) 293
TauI GCSGC 3 cut(s) 45, 101, 218
Tru1I TTAA 1 cut(s) 255
Tru9I TTAA 1 cut(s) 255
TseI GCWGC 2 cut(s) 22, 25
TspGWI ACGGA 1 cut(s) 221
VpaK11BI GGWCC 1 cut(s) 54
XspI CTAG 2 cut(s) 261, 304
ZrmI AGTACT 1 cut(s) 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.