Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001848

Physical Location & Seq

Genomic Coordinates Forward (+)

42721335 .. 42733731

Gene Structure 12397 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00317460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGCCCGGTAGGGGCAGACCCAACCATGCTAGATCAGCGGTGCACGGTGAATCGGAGCTTGATCGGACGACGACGATTGGTCGATCTTGCAATCTTGATTTTGGACAATCTAGGCCAAACCGGACTTTGCTCCAGGATATTTCAAATCTAAACCTAAGAGAATATTTGGAATTCCCTCCAAAAAGTTCTAGTCCTTTCCCTCTCAAAATGCGAGACCCTAGCCGACTAGTCAATGGGGGTGATACTCGGACAACACAATTGTGTTGTGTGAAGAAGTGGTGGTGGCTCTTGTGTCTCGAATCACCTACCTACGGCTGCGAGACCGCGACCTCCGCCGCCGCCACCAACCCCAACTTGGTTTTGGGTTCGTCTTTGGCTTTGGATTGGGTACTCGAATCGCTGGACTACGAATACGACGCTCTCTCAAATCCTTGCCTGCTCGTAGAATCTCGTCCTTTCACTCTATCATTCATTCCAAGTCTCCTCCCGACATTCCTACACTCTCCCACCGTTTCGAGGGAGCTAGAGTCGTCAGTTTTGTTCTACTGGAGAAACAACAAATATATCAGCTATTATAGTGATGGGATTAGATTGTGGTCAAGTACATTTCCTTTCGAAGAGGAATTTGATTTGTTACTTAGCCAAAAGTCCATTATGCATGCTTTATCAATTTTGAAATTACAGAAGGGTAATCAAATGCTTGAAGATTACCCCGATCTTTCAAAGAAGCAGCTGCAGAAAACAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

249

Amino Acids

28.42

Weight (kDa)

6.9

Isoelectric Point (pI)

60.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001848)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0344671 RchiOBHm_Chr2g0103891 RchiOBHm_Chr2g0125481 RchiOBHm_Chr2g0127991 RchiOBHm_Chr4g0404361 RchiOBHm_Chr6g0293921 RchiOBHm_Chr7g0183991 RchiOBHm_Chr7g0200701 RchiOBHm_Chr7g0203451 RchiOBHm_Chr7g0233851
rosa_laevigata	RLG00000009445
rosa_multiflora	Rmu_sc0001762.1_g000048 Rmu_ssc0000198.1_g000001
rosa_roxburghii	Rroxscaffold_176G00431470 Rroxscaffold_1G00006800 Rroxscaffold_1G00038540 Rroxscaffold_1G00072610 Rroxscaffold_2G00078350 Rroxscaffold_2G00079900 Rroxscaffold_2G00125220 Rroxscaffold_3G00246630 Rroxscaffold_4G00306170 Rroxscaffold_4G00314800 Rroxscaffold_4G00317460 Rroxscaffold_4G00319930 Rroxscaffold_5G00343110 Rroxscaffold_6G00395760 Rroxscaffold_6G00421380 Rroxscaffold_7G00160650
rosa_rugosa	Rorug01G0217800 Rorug03G0274300 Rorug04G0088400 Rorug05G0172900 Rorug07G0221500
rosa_samantha	Rh1BG311700 Rh1DG110800 Rh2AG655300 Rh2BG324100 Rh2BG414100 Rh2DG254900 Rh3DG077200 Rh4BG304400 Rh5DG244400 Rh7BG056200
rosa_wichuraiana	Rw1G008450 Rw2G032850 Rw4G008300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	326
AciI	CCGC	5 cut(s)	38, 324, 333, 336, 339
AcsI	RAATTY	2 cut(s)	170, 623
AfaI	GTAC	2 cut(s)	390, 604
AfiI	CCNNNNNNNGG	4 cut(s)	11, 311, 355, 516
AgsI	TTSAA	4 cut(s)	144, 676, 704, 723
AhdI	GACNNNNNGTC	1 cut(s)	78
AhlI	ACTAGT	1 cut(s)	226
AjnI	CCWGG	1 cut(s)	132
AleI	CACNNNNGTG	1 cut(s)	259
AluBI	AGCT	4 cut(s)	58, 523, 570, 733
AluI	AGCT	4 cut(s)	58, 523, 570, 733
Alw21I	GWGCWC	1 cut(s)	45
Alw26I	GTCTC	4 cut(s)	207, 299, 314, 485
Alw44I	GTGCAC	1 cut(s)	41
AoxI	GGCC	1 cut(s)	113
ApaLI	GTGCAC	1 cut(s)	41
ApeKI	GCWGC	3 cut(s)	315, 730, 733
ApoI	RAATTY	2 cut(s)	170, 623
AsuC2I	CCSGG	1 cut(s)	6
AsuHPI	GGTGA	3 cut(s)	59, 251, 294
AsuII	TTCGAA	1 cut(s)	615
BaeGI	GKGCMC	1 cut(s)	45
Bbv12I	GWGCWC	1 cut(s)	45
BbvI	GCAGC	3 cut(s)	302, 720, 742
BccI	CCATC	1 cut(s)	575
BceAI	ACGGC	1 cut(s)	328
BciT130I	CCWGG	1 cut(s)	134
BcnI	CCSGG	1 cut(s)	6
BcoDI	GTCTC	4 cut(s)	207, 299, 314, 485
BcuI	ACTAGT	1 cut(s)	226
BfaI	CTAG	6 cut(s)	30, 111, 189, 219, 227, 524
BfmI	CTRYAG	1 cut(s)	734
BisI	GCNGC	5 cut(s)	316, 336, 339, 731, 734
BlsI	GCNGC	5 cut(s)	317, 337, 340, 732, 735
Bme1390I	CCNGG	2 cut(s)	6, 134
BmeRI	GACNNNNNGTC	1 cut(s)	78
BmrFI	CCNGG	2 cut(s)	6, 134
BpmI	CTGGAG	2 cut(s)	116, 568
Bpu14I	TTCGAA	1 cut(s)	615
BpuMI	CCSGG	1 cut(s)	6
BsaI	GGTCTC	2 cut(s)	207, 314
BsaWI	WCCGGW	1 cut(s)	120
BsaXI	ACNNNNNCTCC	2 cut(s)	512, 542
Bsc4I	CCNNNNNNNGG	4 cut(s)	11, 311, 355, 516
Bse1I	ACTGG	1 cut(s)	551
BseBI	CCWGG	1 cut(s)	134
BseLI	CCNNNNNNNGG	4 cut(s)	11, 311, 355, 516
BseNI	ACTGG	1 cut(s)	551
BseRI	GAGGAG	1 cut(s)	473
BseSI	GKGCMC	1 cut(s)	45
BseXI	GCAGC	3 cut(s)	302, 720, 742
Bsh1236I	CGCG	1 cut(s)	326
BshFI	GGCC	1 cut(s)	115
BsiHKAI	GWGCWC	1 cut(s)	45
BsiSI	CCGG	2 cut(s)	6, 121
BslI	CCNNNNNNNGG	4 cut(s)	11, 311, 355, 516
BsmAI	GTCTC	4 cut(s)	207, 299, 314, 485
BsnI	GGCC	1 cut(s)	115
Bso31I	GGTCTC	2 cut(s)	207, 314
Bsp119I	TTCGAA	1 cut(s)	615
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp143I	GATC	4 cut(s)	32, 61, 83, 715
BspACI	CCGC	5 cut(s)	38, 324, 333, 336, 339
BspANI	GGCC	1 cut(s)	115
BspFNI	CGCG	1 cut(s)	326
BspMAI	CTGCAG	1 cut(s)	738
BspT104I	TTCGAA	1 cut(s)	615
BspTNI	GGTCTC	2 cut(s)	207, 314
BsrI	ACTGG	1 cut(s)	551
BssMI	GATC	4 cut(s)	32, 61, 83, 715
Bst2UI	CCWGG	1 cut(s)	134
Bst4CI	ACNGT	2 cut(s)	47, 511
Bst6I	CTCTTC	1 cut(s)	612
BstBI	TTCGAA	1 cut(s)	615
BstC8I	GCNNGC	2 cut(s)	437, 660
BstDEI	CTNAG	2 cut(s)	155, 638
BstFNI	CGCG	1 cut(s)	326
BstKTI	GATC	4 cut(s)	35, 64, 86, 718
BstMAI	GTCTC	4 cut(s)	207, 299, 314, 485
BstMBI	GATC	4 cut(s)	32, 61, 83, 715
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 332
BstNI	CCWGG	1 cut(s)	134
BstNSI	RCATGY	1 cut(s)	662
BstSCI	CCNGG	2 cut(s)	4, 132
BstSFI	CTRYAG	1 cut(s)	734
BstSLI	GKGCMC	1 cut(s)	45
BstUI	CGCG	1 cut(s)	326
BstV1I	GCAGC	3 cut(s)	302, 720, 742
BsuRI	GGCC	1 cut(s)	115
Cac8I	GCNNGC	2 cut(s)	437, 660
CseI	GACGC	1 cut(s)	425
Csp6I	GTAC	2 cut(s)	389, 603
CviAII	CATG	2 cut(s)	26, 659
CviQI	GTAC	2 cut(s)	389, 603
DdeI	CTNAG	2 cut(s)	155, 638
DpnI	GATC	4 cut(s)	34, 63, 85, 717
DpnII	GATC	4 cut(s)	32, 61, 83, 715
DriI	GACNNNNNGTC	1 cut(s)	78
Eam1104I	CTCTTC	1 cut(s)	612
Eam1105I	GACNNNNNGTC	1 cut(s)	78
EarI	CTCTTC	1 cut(s)	612
EciI	GGCGGA	1 cut(s)	322
Eco31I	GGTCTC	2 cut(s)	207, 314
EcoRI	GAATTC	1 cut(s)	170
EcoRII	CCWGG	1 cut(s)	132
EcoT22I	ATGCAT	1 cut(s)	660
FaeI	CATG	2 cut(s)	29, 662
FaiI	YATR	5 cut(s)	27, 564, 576, 656, 660
FatI	CATG	2 cut(s)	25, 658
Fnu4HI	GCNGC	5 cut(s)	316, 336, 339, 731, 734
Fsp4HI	GCNGC	5 cut(s)	316, 336, 339, 731, 734
FspBI	CTAG	6 cut(s)	30, 111, 189, 219, 227, 524
GluI	GCNGC	5 cut(s)	316, 336, 339, 731, 734
GsuI	CTGGAG	2 cut(s)	116, 568
HaeIII	GGCC	1 cut(s)	115
HapII	CCGG	2 cut(s)	6, 121
HgaI	GACGC	1 cut(s)	425
Hin1II	CATG	2 cut(s)	29, 662
HinfI	GANTC	5 cut(s)	50, 299, 395, 446, 527
HpaII	CCGG	2 cut(s)	6, 121
HphI	GGTGA	3 cut(s)	59, 251, 294
Hpy166II	GTNNAC	1 cut(s)	43
Hpy188I	TCNGA	3 cut(s)	55, 66, 249
Hpy188III	TCNNGA	3 cut(s)	95, 296, 487
Hpy8I	GTNNAC	1 cut(s)	43
Hpy99I	CGWCG	3 cut(s)	73, 76, 419
HpyAV	CCTTC	1 cut(s)	679
HpyCH4III	ACNGT	2 cut(s)	47, 511
HpyCH4V	TGCA	4 cut(s)	43, 90, 658, 736
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 332
HpyF3I	CTNAG	2 cut(s)	155, 638
Hsp92II	CATG	2 cut(s)	29, 662
Kzo9I	GATC	4 cut(s)	32, 61, 83, 715
LmnI	GCTCC	3 cut(s)	55, 135, 520
LpnPI	CCDG	7 cut(s)	19, 119, 134, 146, 386, 449, 532
Lsp1109I	GCAGC	3 cut(s)	302, 720, 742
MaeI	CTAG	6 cut(s)	30, 111, 189, 219, 227, 524
MaeIII	GTNAC	1 cut(s)	633
MalI	GATC	4 cut(s)	34, 63, 85, 717
MboI	GATC	4 cut(s)	32, 61, 83, 715
MboII	GAAGA	3 cut(s)	283, 629, 716
MfeI	CAATTG	1 cut(s)	257
MhlI	GDGCHC	1 cut(s)	45
MluCI	AATT	5 cut(s)	170, 257, 623, 669, 677
MlyI	GAGTC	1 cut(s)	536
MnlI	CCTC	6 cut(s)	186, 210, 340, 494, 510, 613
Mph1103I	ATGCAT	1 cut(s)	660
MslI	CAYNNNNRTG	1 cut(s)	259
MspA1I	CMGCKG	2 cut(s)	38, 733
MspI	CCGG	2 cut(s)	6, 121
MspR9I	CCNGG	2 cut(s)	6, 134
MunI	CAATTG	1 cut(s)	257
MvaI	CCWGG	1 cut(s)	134
MvnI	CGCG	1 cut(s)	326
MwoI	GCNNNNNNNGC	2 cut(s)	35, 332
NciI	CCSGG	1 cut(s)	6
NdeII	GATC	4 cut(s)	32, 61, 83, 715
NlaIII	CATG	2 cut(s)	29, 662
NsiI	ATGCAT	1 cut(s)	660
NspI	RCATGY	1 cut(s)	662
NspV	TTCGAA	1 cut(s)	615
OliI	CACNNNNGTG	1 cut(s)	259
PaeI	GCATGC	1 cut(s)	662
PfeI	GAWTC	4 cut(s)	50, 299, 395, 446
PfoI	TCCNGGA	1 cut(s)	132
PkrI	GCNGC	5 cut(s)	317, 337, 340, 732, 735
PleI	GAGTC	1 cut(s)	535
PpsI	GAGTC	1 cut(s)	535
Psp6I	CCWGG	1 cut(s)	132
PspGI	CCWGG	1 cut(s)	132
PstI	CTGCAG	1 cut(s)	738
PvuII	CAGCTG	1 cut(s)	733
RsaI	GTAC	2 cut(s)	390, 604
RsaNI	GTAC	2 cut(s)	389, 603
RseI	CAYNNNNRTG	1 cut(s)	259
SatI	GCNGC	5 cut(s)	316, 336, 339, 731, 734
Sau3AI	GATC	4 cut(s)	32, 61, 83, 715
SchI	GAGTC	1 cut(s)	536
ScrFI	CCNGG	2 cut(s)	6, 134
SduI	GDGCHC	1 cut(s)	45
SetI	ASST	8 cut(s)	60, 156, 307, 311, 332, 525, 572, 735
SfcI	CTRYAG	1 cut(s)	734
SfuI	TTCGAA	1 cut(s)	615
SmiMI	CAYNNNNRTG	1 cut(s)	259
SpeI	ACTAGT	1 cut(s)	226
SphI	GCATGC	1 cut(s)	662
Sse9I	AATT	5 cut(s)	170, 257, 623, 669, 677
SsiI	CCGC	5 cut(s)	38, 324, 333, 336, 339
SspI	AATATT	1 cut(s)	164
SspMI	CTAG	6 cut(s)	30, 111, 189, 219, 227, 524
StyD4I	CCNGG	2 cut(s)	4, 132
TaaI	ACNGT	2 cut(s)	47, 511
TaqI	TCGA	5 cut(s)	82, 297, 393, 515, 615
TasI	AATT	5 cut(s)	170, 257, 623, 669, 677
TatI	WGTACW	1 cut(s)	602
TauI	GCSGC	2 cut(s)	338, 341
TfiI	GAWTC	4 cut(s)	50, 299, 395, 446
TseI	GCWGC	3 cut(s)	315, 730, 733
TspDTI	ATGAA	1 cut(s)	460
VneI	GTGCAC	1 cut(s)	41
XapI	RAATTY	2 cut(s)	170, 623
XceI	RCATGY	1 cut(s)	662
XcmI	CCANNNNNNNNNTGG	2 cut(s)	352, 358
XspI	CTAG	6 cut(s)	30, 111, 189, 219, 227, 524
Zsp2I	ATGCAT	1 cut(s)	660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.