Rh2BG414100

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Forward (+)
58467806 .. 58472303
4498 bp
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UTR
Exon/CDS
Intron
Rh2BG414100.1

Sequence Viewer

Length: 480 bp
ATGTTCATAAGCCTTTATAGTTTCTGTAACCATGACACTAGAAACGGTGTGCTATCAGCTTCTGTAACTGTGGGTTCAGTTATGGCGTCAAAGATGAGATGCAGCAGAACAAAAAAATTGCTACAACAAGGTCATGCTGAAAATTATAATGATCAAAGGAGAATGGAAGAAATGTATAATCATCAGAATTTTGTTTCCAGTACAGTTCAAAGTGAAGGTTCTGTTTCTAAGAGAGGTCAACATTCTGAGGTTAAATCAAGGACATCAACACGTGCATTTGAGTTAGCAATGACAGAACAGAATCAATGTCTACACAGTCAGTATAGTTCTGTATGTCAAAATGTGAATATATCTGAACATCGGAACAACCGATTTAGAGAAACATTGGAGCATTCAGAAAGTAGTAGTTCTTCTCAATTTGTGCAGACCGATGAAATTAGAGGTATAGTTTTTCCAACTGATCATCAGTTAAAATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

18.25

Weight (kDa)

8.41

Isoelectric Point (pI)

45.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 147
AccI GTMKAC 1 cut(s) 310
AcsI RAATTY 2 cut(s) 187, 473
AcvI CACGTG 1 cut(s) 272
AcyI GRCGYC 1 cut(s) 86
AfaI GTAC 1 cut(s) 202
AflIII ACRYGT 1 cut(s) 269
AgsI TTSAA 1 cut(s) 209
AluBI AGCT 1 cut(s) 59
AluI AGCT 1 cut(s) 59
AlwNI CAGNNNCTG 1 cut(s) 62
ApeKI GCWGC 1 cut(s) 102
ApoI RAATTY 2 cut(s) 187, 473
BarI GAAGNNNNNNTAC 2 cut(s) 394, 426
BbrPI CACGTG 1 cut(s) 272
BbvI GCAGC 1 cut(s) 114
BclI TGATCA 2 cut(s) 151, 460
BfaI CTAG 1 cut(s) 39
BisI GCNGC 1 cut(s) 103
BlsI GCNGC 1 cut(s) 104
BmsI GCATC 1 cut(s) 89
BsaAI YACGTR 1 cut(s) 272
BsaHI GRCGYC 1 cut(s) 86
Bse1I ACTGG 1 cut(s) 198
Bse3DI GCAATG 1 cut(s) 294
BseMI GCAATG 1 cut(s) 294
BseMII CTCAG 1 cut(s) 237
BseNI ACTGG 1 cut(s) 198
BseXI GCAGC 1 cut(s) 114
BsgI GTGCAG 1 cut(s) 443
BsmI GAATGC 1 cut(s) 391
Bsp143I GATC 2 cut(s) 151, 460
BspCNI CTCAG 1 cut(s) 238
BsrDI GCAATG 1 cut(s) 294
BsrI ACTGG 1 cut(s) 198
BssMI GATC 2 cut(s) 151, 460
BssNI GRCGYC 1 cut(s) 86
Bst4CI ACNGT 4 cut(s) 47, 70, 205, 317
BstACI GRCGYC 1 cut(s) 86
BstBAI YACGTR 1 cut(s) 272
BstDEI CTNAG 2 cut(s) 228, 246
BstKTI GATC 2 cut(s) 154, 463
BstMBI GATC 2 cut(s) 151, 460
BstV1I GCAGC 1 cut(s) 114
CaiI CAGNNNCTG 1 cut(s) 62
CseI GACGC 1 cut(s) 75
Csp6I GTAC 1 cut(s) 201
CviAII CATG 2 cut(s) 32, 134
CviJI RGCY 2 cut(s) 12, 59
CviKI_1 RGCY 2 cut(s) 12, 59
CviQI GTAC 1 cut(s) 201
DdeI CTNAG 2 cut(s) 228, 246
DpnI GATC 2 cut(s) 153, 462
DpnII GATC 2 cut(s) 151, 460
Eco72I CACGTG 1 cut(s) 272
FaeI CATG 2 cut(s) 35, 137
FatI CATG 2 cut(s) 31, 133
FbaI TGATCA 2 cut(s) 151, 460
FblI GTMKAC 1 cut(s) 310
Fnu4HI GCNGC 1 cut(s) 103
Fsp4HI GCNGC 1 cut(s) 103
FspBI CTAG 1 cut(s) 39
GluI GCNGC 1 cut(s) 103
HgaI GACGC 1 cut(s) 75
Hin1I GRCGYC 1 cut(s) 86
Hin1II CATG 2 cut(s) 35, 137
HincII GTYRAC 1 cut(s) 239
HindII GTYRAC 1 cut(s) 239
HinfI GANTC 1 cut(s) 301
Hpy166II GTNNAC 2 cut(s) 239, 311
Hpy188I TCNGA 5 cut(s) 186, 247, 355, 363, 397
Hpy8I GTNNAC 2 cut(s) 239, 311
HpyAV CCTTC 1 cut(s) 209
HpyCH4III ACNGT 4 cut(s) 47, 70, 205, 317
HpyCH4IV ACGT 1 cut(s) 271
HpyCH4V TGCA 3 cut(s) 102, 275, 424
HpyF3I CTNAG 2 cut(s) 228, 246
HpySE526I ACGT 1 cut(s) 271
Hsp92I GRCGYC 1 cut(s) 86
Hsp92II CATG 2 cut(s) 35, 137
Ksp22I TGATCA 2 cut(s) 151, 460
Kzo9I GATC 2 cut(s) 151, 460
LmnI GCTCC 1 cut(s) 388
LpnPI CCDG 1 cut(s) 211
Lsp1109I GCAGC 1 cut(s) 114
LweI GCATC 1 cut(s) 89
MaeI CTAG 1 cut(s) 39
MaeII ACGT 1 cut(s) 271
MaeIII GTNAC 2 cut(s) 26, 64
MalI GATC 2 cut(s) 153, 462
MboI GATC 2 cut(s) 151, 460
MboII GAAGA 2 cut(s) 179, 402
MluCI AATT 6 cut(s) 116, 142, 187, 416, 435, 473
MmeI TCCRAC 1 cut(s) 479
MnlI CCTC 3 cut(s) 227, 241, 434
MseI TTAA 2 cut(s) 252, 470
Mva1269I GAATGC 1 cut(s) 391
NdeII GATC 2 cut(s) 151, 460
NlaIII CATG 2 cut(s) 35, 137
PcsI WCGNNNNNNNCGW 1 cut(s) 367
PctI GAATGC 1 cut(s) 391
PfeI GAWTC 1 cut(s) 301
PkrI GCNGC 1 cut(s) 104
PmaCI CACGTG 1 cut(s) 272
PmlI CACGTG 1 cut(s) 272
Ppu21I YACGTR 1 cut(s) 272
PsiI TTATAA 1 cut(s) 147
PspCI CACGTG 1 cut(s) 272
PstNI CAGNNNCTG 1 cut(s) 62
RsaI GTAC 1 cut(s) 202
RsaNI GTAC 1 cut(s) 201
SaqAI TTAA 2 cut(s) 252, 470
SatI GCNGC 1 cut(s) 103
Sau3AI GATC 2 cut(s) 151, 460
SetI ASST 7 cut(s) 61, 133, 220, 238, 252, 274, 445
SfaNI GCATC 1 cut(s) 89
SgeI CNNG 8 cut(s) 44, 51, 140, 146, 210, 270, 282, 284
Sse9I AATT 6 cut(s) 116, 142, 187, 416, 435, 473
SspMI CTAG 1 cut(s) 39
TaaI ACNGT 4 cut(s) 47, 70, 205, 317
TaiI ACGT 1 cut(s) 274
TaqII GACCGA 1 cut(s) 443
TasI AATT 6 cut(s) 116, 142, 187, 416, 435, 473
TatI WGTACW 1 cut(s) 200
TfiI GAWTC 1 cut(s) 301
Tru1I TTAA 2 cut(s) 252, 470
Tru9I TTAA 2 cut(s) 252, 470
TseI GCWGC 1 cut(s) 102
TspDTI ATGAA 1 cut(s) 447
XapI RAATTY 2 cut(s) 187, 473
XmiI GTMKAC 1 cut(s) 310
XspI CTAG 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.