Rh3DG077200

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Forward (+)
5993922 .. 5996699
2778 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG077200.1

Sequence Viewer

Length: 609 bp
ATGCAAAAGCGTTTACACATCGTTCTGCTGCCACTGTTCCTTTGTGTATTGGTTAACACTATCTTGATCTCTTATTCTTATTCAGATTGTTGGAACAGTGTGCAGTCAGATTGTTCAACTGCTTTGAATTCAGTTATGGCTCCAAAGACGAGGTGGACAAGAAGTAAGAGATTGTTACAGGAGTATGAAGATGAAAATCATAATGCTGAAAGGGAAGTCCTAGAAATATCTAATGACCAGATTGTAATTGGTAGTATATCTGAAACTGGAACCGCAGTTTCTGGTAGGGACGAAGACCATCAAATTCATCCAAGATCAAGGCGTGCATCTGAGTTGAGGATGAGAAAAAGGGACCGACATTTAGACACTCAATACAGTGCTGGGAATGATGATGCCAGTCGATTTCAACATTGTCGCAAGAGATTTATAAGCAATCAAGAAAACACTGCTGCAATTTCAAATCAAAGTTTTTCTGGGACCTCACAATGTTTAGACAGAGGCAGTTCTTCTCAACTTCCGAACAGTGATGAAGTTGAAGGTCAATCGTCGCATCGTTTTGGTCAAGCAGTGTATCAAAAAAGTAGAGAAGGTTATTCCTATCAAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

202

Amino Acids

23.09

Weight (kDa)

7.05

Isoelectric Point (pI)

51.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 428
AciI CCGC 1 cut(s) 273
AcsI RAATTY 3 cut(s) 127, 303, 603
AgsI TTSAA 5 cut(s) 117, 127, 407, 459, 536
AlwNI CAGNNNCTG 1 cut(s) 281
ApeKI GCWGC 2 cut(s) 28, 449
ApoI RAATTY 3 cut(s) 127, 303, 603
AspS9I GGNCC 2 cut(s) 352, 477
AvaII GGWCC 2 cut(s) 352, 477
BbsI GAAGAC 1 cut(s) 300
BbvI GCAGC 2 cut(s) 15, 436
BccI CCATC 1 cut(s) 306
BfaI CTAG 1 cut(s) 221
BisI GCNGC 2 cut(s) 29, 450
BlsI GCNGC 2 cut(s) 30, 451
Bme18I GGWCC 2 cut(s) 352, 477
BmgT120I GGNCC 2 cut(s) 352, 477
BmiI GGNNCC 4 cut(s) 141, 271, 353, 478
BmsI GCATC 3 cut(s) 335, 382, 559
BpiI GAAGAC 1 cut(s) 300
BsaBI GATNNNNATC 1 cut(s) 195
Bse1I ACTGG 2 cut(s) 271, 396
Bse8I GATNNNNATC 1 cut(s) 195
BseGI GGATG 2 cut(s) 307, 345
BseJI GATNNNNATC 1 cut(s) 195
BseMII CTCAG 1 cut(s) 321
BseNI ACTGG 2 cut(s) 271, 396
BseXI GCAGC 2 cut(s) 15, 436
BseYI CCCAGC 1 cut(s) 380
BsgI GTGCAG 1 cut(s) 122
BslFI GGGAC 3 cut(s) 302, 365, 490
BsmFI GGGAC 3 cut(s) 302, 365, 490
Bsp143I GATC 2 cut(s) 66, 314
BspACI CCGC 1 cut(s) 273
BspCNI CTCAG 1 cut(s) 322
BspLI GGNNCC 4 cut(s) 141, 271, 353, 478
BsrI ACTGG 2 cut(s) 271, 396
BssMI GATC 2 cut(s) 66, 314
Bst4CI ACNGT 4 cut(s) 36, 98, 377, 524
BstC8I GCNNGC 1 cut(s) 324
BstDEI CTNAG 1 cut(s) 330
BstF5I GGATG 2 cut(s) 307, 345
BstKTI GATC 2 cut(s) 69, 317
BstMBI GATC 2 cut(s) 66, 314
BstV1I GCAGC 2 cut(s) 15, 436
BstV2I GAAGAC 1 cut(s) 300
BtsCI GGATG 2 cut(s) 307, 345
BtsI GCAGTG 2 cut(s) 444, 573
BtsIMutI CAGTG 6 cut(s) 32, 103, 382, 444, 529, 573
Cac8I GCNNGC 1 cut(s) 324
CaiI CAGNNNCTG 1 cut(s) 281
Cfr13I GGNCC 2 cut(s) 352, 477
CviJI RGCY 1 cut(s) 140
CviKI_1 RGCY 1 cut(s) 140
DdeI CTNAG 1 cut(s) 330
DpnI GATC 2 cut(s) 68, 316
DpnII GATC 2 cut(s) 66, 314
Eco47I GGWCC 2 cut(s) 352, 477
EcoO109I RGGNCCY 1 cut(s) 477
EcoRI GAATTC 1 cut(s) 127
FaiI YATR 5 cut(s) 137, 186, 201, 257, 428
FaqI GGGAC 3 cut(s) 302, 365, 490
Fnu4HI GCNGC 2 cut(s) 29, 450
FokI GGATG 2 cut(s) 294, 352
Fsp4HI GCNGC 2 cut(s) 29, 450
FspBI CTAG 1 cut(s) 221
GluI GCNGC 2 cut(s) 29, 450
GsaI CCCAGC 1 cut(s) 384
HincII GTYRAC 1 cut(s) 55
HindII GTYRAC 1 cut(s) 55
HpaI GTTAAC 1 cut(s) 55
Hpy166II GTNNAC 3 cut(s) 14, 55, 156
Hpy188I TCNGA 5 cut(s) 85, 109, 262, 331, 519
Hpy188III TCNNGA 2 cut(s) 64, 437
Hpy8I GTNNAC 3 cut(s) 14, 55, 156
Hpy99I CGWCG 1 cut(s) 550
HpyAV CCTTC 2 cut(s) 530, 581
HpyCH4III ACNGT 4 cut(s) 36, 98, 377, 524
HpyCH4V TGCA 4 cut(s) 4, 103, 326, 452
HpyF3I CTNAG 1 cut(s) 330
KspAI GTTAAC 1 cut(s) 55
Kzo9I GATC 2 cut(s) 66, 314
LmnI GCTCC 1 cut(s) 145
LpnPI CCDG 7 cut(s) 164, 251, 252, 267, 366, 409, 459
Lsp1109I GCAGC 2 cut(s) 15, 436
LweI GCATC 3 cut(s) 335, 382, 559
MaeI CTAG 1 cut(s) 221
MaeIII GTNAC 1 cut(s) 174
MalI GATC 2 cut(s) 68, 316
MboI GATC 2 cut(s) 66, 314
MboII GAAGA 3 cut(s) 200, 305, 498
MluCI AATT 5 cut(s) 127, 246, 303, 453, 603
MmeI TCCRAC 1 cut(s) 71
MnlI CCTC 4 cut(s) 144, 330, 490, 491
MseI TTAA 2 cut(s) 54, 607
NdeII GATC 2 cut(s) 66, 314
NlaIV GGNNCC 4 cut(s) 141, 271, 353, 478
PkrI GCNGC 2 cut(s) 30, 451
PpuMI RGGWCCY 1 cut(s) 477
PsiI TTATAA 1 cut(s) 428
Psp5II RGGWCCY 1 cut(s) 477
PspFI CCCAGC 1 cut(s) 380
PspN4I GGNNCC 4 cut(s) 141, 271, 353, 478
PspPI GGNCC 2 cut(s) 352, 477
PspPPI RGGWCCY 1 cut(s) 477
PstNI CAGNNNCTG 1 cut(s) 281
SaqAI TTAA 2 cut(s) 54, 607
SatI GCNGC 2 cut(s) 29, 450
Sau3AI GATC 2 cut(s) 66, 314
Sau96I GGNCC 2 cut(s) 352, 477
SetI ASST 4 cut(s) 155, 482, 541, 592
SfaNI GCATC 3 cut(s) 335, 382, 559
SinI GGWCC 2 cut(s) 352, 477
Sse9I AATT 5 cut(s) 127, 246, 303, 453, 603
SsiI CCGC 1 cut(s) 273
SspMI CTAG 1 cut(s) 221
TaaI ACNGT 4 cut(s) 36, 98, 377, 524
TaqI TCGA 1 cut(s) 400
TaqII GACCGA 1 cut(s) 369
TasI AATT 5 cut(s) 127, 246, 303, 453, 603
Tru1I TTAA 2 cut(s) 54, 607
Tru9I TTAA 2 cut(s) 54, 607
TscAI CASTG 6 cut(s) 39, 103, 382, 451, 529, 573
TseI GCWGC 2 cut(s) 28, 449
TspDTI ATGAA 4 cut(s) 201, 207, 296, 543
TspRI CASTG 6 cut(s) 39, 103, 382, 451, 529, 573
VpaK11BI GGWCC 2 cut(s) 352, 477
XapI RAATTY 3 cut(s) 127, 303, 603
XcmI CCANNNNNNNNNTGG 2 cut(s) 150, 245
XspI CTAG 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.