Rmu_ssc0000198.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000198.1
OG0001848
Physical Location & Seq
Reverse (-)
3305 .. 4552
1248 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000198.1_g000001.1.cds

Sequence Viewer

Length: 375 bp
atgaggtggacaagaagtaagagattgttagaggagtatgaagatgaaaatcataaagctgaaagggaggtccaagaaatatctaatgaccagaatgtaattggtggtatatctgaaactggaaccgcagtttttggtagggatgaagaccatcaaattcatccaagatcaaggcgtgaacaaccaactccatcgagcacaaatcacagctgcataatcattgatccagacattggccaaagagaagactacgaggaagaattctcaaaagcaggggataagcggaagttgctaccaactccatccaagcaaccactccaccaagaagccaaagatcatgcaaaaaaaaacagcgtcacggctcaataccgttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

14.38

Weight (kDa)

5.87

Isoelectric Point (pI)

59.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 233
AciI CCGC 2 cut(s) 126, 283
AclWI GGATC 1 cut(s) 218
AcoI YGGCCR 1 cut(s) 235
AcsI RAATTY 2 cut(s) 156, 260
AfiI CCNNNNNNNGG 1 cut(s) 233
AluBI AGCT 2 cut(s) 59, 210
AluI AGCT 2 cut(s) 59, 210
Alw21I GWGCWC 1 cut(s) 200
AlwI GGATC 1 cut(s) 218
AoxI GGCC 1 cut(s) 235
ApeKI GCWGC 1 cut(s) 210
ApoI RAATTY 2 cut(s) 156, 260
AspS9I GGNCC 1 cut(s) 70
AvaII GGWCC 1 cut(s) 70
BalI TGGCCA 1 cut(s) 237
BbsI GAAGAC 2 cut(s) 153, 252
Bbv12I GWGCWC 1 cut(s) 200
BbvI GCAGC 1 cut(s) 197
BccI CCATC 3 cut(s) 159, 199, 310
BisI GCNGC 1 cut(s) 211
BlsI GCNGC 1 cut(s) 212
Bme18I GGWCC 1 cut(s) 70
BmgT120I GGNCC 1 cut(s) 70
BmiI GGNNCC 1 cut(s) 124
BpiI GAAGAC 2 cut(s) 153, 252
BsaBI GATNNNNATC 1 cut(s) 48
Bsc4I CCNNNNNNNGG 1 cut(s) 233
Bse1I ACTGG 1 cut(s) 124
Bse8I GATNNNNATC 1 cut(s) 48
BseGI GGATG 3 cut(s) 148, 160, 302
BseJI GATNNNNATC 1 cut(s) 48
BseLI CCNNNNNNNGG 1 cut(s) 233
BseNI ACTGG 1 cut(s) 124
BseRI GAGGAG 1 cut(s) 47
BseXI GCAGC 1 cut(s) 197
BshFI GGCC 1 cut(s) 237
BsiHKAI GWGCWC 1 cut(s) 200
BslI CCNNNNNNNGG 1 cut(s) 233
BsnI GGCC 1 cut(s) 237
Bsp1286I GDGCHC 1 cut(s) 200
Bsp143I GATC 3 cut(s) 167, 223, 334
BspACI CCGC 2 cut(s) 126, 283
BspANI GGCC 1 cut(s) 237
BspLI GGNNCC 1 cut(s) 124
BspPI GGATC 1 cut(s) 218
BsrI ACTGG 1 cut(s) 124
BssMI GATC 3 cut(s) 167, 223, 334
Bst4CI ACNGT 1 cut(s) 371
BstF5I GGATG 3 cut(s) 148, 160, 302
BstKTI GATC 3 cut(s) 170, 226, 337
BstMBI GATC 3 cut(s) 167, 223, 334
BstMWI GCNNNNNNNGC 1 cut(s) 289
BstV1I GCAGC 1 cut(s) 197
BstV2I GAAGAC 2 cut(s) 153, 252
BsuRI GGCC 1 cut(s) 237
BtsCI GGATG 3 cut(s) 148, 160, 302
Cfr13I GGNCC 1 cut(s) 70
CseI GACGC 1 cut(s) 343
CviAII CATG 1 cut(s) 338
CviJI RGCY 5 cut(s) 59, 210, 237, 329, 362
CviKI_1 RGCY 5 cut(s) 59, 210, 237, 329, 362
DpnI GATC 3 cut(s) 169, 225, 336
DpnII GATC 3 cut(s) 167, 223, 334
EaeI YGGCCR 1 cut(s) 235
Eco47I GGWCC 1 cut(s) 70
EcoRI GAATTC 1 cut(s) 260
FaeI CATG 1 cut(s) 341
FaiI YATR 5 cut(s) 39, 54, 110, 215, 339
FatI CATG 1 cut(s) 337
Fnu4HI GCNGC 1 cut(s) 211
FokI GGATG 3 cut(s) 147, 155, 289
Fsp4HI GCNGC 1 cut(s) 211
GluI GCNGC 1 cut(s) 211
HaeIII GGCC 1 cut(s) 237
HgaI GACGC 1 cut(s) 343
Hin1II CATG 1 cut(s) 341
Hpy166II GTNNAC 2 cut(s) 9, 179
Hpy188I TCNGA 1 cut(s) 115
Hpy188III TCNNGA 1 cut(s) 227
Hpy8I GTNNAC 2 cut(s) 9, 179
HpyCH4III ACNGT 1 cut(s) 371
HpyCH4V TGCA 2 cut(s) 213, 341
HpyF10VI GCNNNNNNNGC 1 cut(s) 289
Hsp92II CATG 1 cut(s) 341
Kzo9I GATC 3 cut(s) 167, 223, 334
LpnPI CCDG 4 cut(s) 104, 105, 240, 258
Lsp1109I GCAGC 1 cut(s) 197
MaeIII GTNAC 1 cut(s) 355
MalI GATC 3 cut(s) 169, 225, 336
MboI GATC 3 cut(s) 167, 223, 334
MboII GAAGA 4 cut(s) 53, 158, 257, 269
MhlI GDGCHC 1 cut(s) 200
MlsI TGGCCA 1 cut(s) 237
MluCI AATT 3 cut(s) 99, 156, 260
MluNI TGGCCA 1 cut(s) 237
MnlI CCTC 3 cut(s) 25, 61, 247
Mox20I TGGCCA 1 cut(s) 237
MscI TGGCCA 1 cut(s) 237
MseI TTAA 1 cut(s) 373
Msp20I TGGCCA 1 cut(s) 237
MspA1I CMGCKG 1 cut(s) 210
MwoI GCNNNNNNNGC 1 cut(s) 289
NdeII GATC 3 cut(s) 167, 223, 334
NlaIII CATG 1 cut(s) 341
NlaIV GGNNCC 1 cut(s) 124
NmuCI GTSAC 1 cut(s) 355
PflMI CCANNNNNTGG 1 cut(s) 233
PkrI GCNGC 1 cut(s) 212
PspN4I GGNNCC 1 cut(s) 124
PspPI GGNCC 1 cut(s) 70
PvuII CAGCTG 1 cut(s) 210
SaqAI TTAA 1 cut(s) 373
SatI GCNGC 1 cut(s) 211
Sau3AI GATC 3 cut(s) 167, 223, 334
Sau96I GGNCC 1 cut(s) 70
SduI GDGCHC 1 cut(s) 200
SetI ASST 4 cut(s) 8, 61, 72, 212
SinI GGWCC 1 cut(s) 70
Sse9I AATT 3 cut(s) 99, 156, 260
SsiI CCGC 2 cut(s) 126, 283
TaaI ACNGT 1 cut(s) 371
TaqI TCGA 1 cut(s) 194
TasI AATT 3 cut(s) 99, 156, 260
Tru1I TTAA 1 cut(s) 373
Tru9I TTAA 1 cut(s) 373
TseFI GTSAC 1 cut(s) 355
TseI GCWGC 1 cut(s) 210
Tsp45I GTSAC 1 cut(s) 355
TspDTI ATGAA 4 cut(s) 54, 60, 149, 159
Van91I CCANNNNNTGG 1 cut(s) 233
VpaK11BI GGWCC 1 cut(s) 70
XapI RAATTY 2 cut(s) 156, 260
XcmI CCANNNNNNNNNTGG 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.