Rw1G008450

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0001848
Physical Location & Seq
Reverse (-)
18289177 .. 18291273
2097 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G008450.1

Sequence Viewer

Length: 690 bp
ATGCAGGAAGTCAGGAACATGTTTAGAGCTACAGCCATAAAAGCCGCATCTGCCTTGGCCATAAGGCAAACCAATGCCCTGACAATTGTCCGGCCAAAACCAATCGTACCTCTTCTTTCATTCATTTTCCATAAGAAAGAACTCCGAGCCATTAAGTTCATTGAAGAGCATGACACAGGAAAATCTCAGTGGTTTGCGATTGTCGACACACATAACCCTAAGAAAAGAGAGGTCATCAACAAGTTCCGCACATGTATGGTTTGGTTCCATATGTTTACTGCGTCTCCAGATTTCACCAGTGATTTAATAGCTCCGCCTTTAATGCACCGACTGCCATTTCTTATGCATGGAGTGCTGGGGGTGGATCAGGACTTGATCCTTTTTAAGATGCGGATGCCATTTTATTTTAGATATCCGTCTATCATCGTTGAGGCCGATGAACAAGCTGTTGGGATTATCGAGAAGATTGGGGACGATTACAGCATTAAATGCGGAAATGAGTTCTTGTATGTGAGTTCATCAAGCTCTGACTTCATCATATATGATGATGCCAAGAGGATCTCAGCCTTAATTACCCAATTCACAGGCACGAACAAGACTCAGAAGGTTTATCCCCCCTCTATTCTCAAGATTGGCAACTTGCAATTTCCTGTGATGCCGGTCTATTATCCTGTGAATTTGAAGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

229

Amino Acids

26.33

Weight (kDa)

9.24

Isoelectric Point (pI)

46.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 204
AciI CCGC 5 cut(s) 45, 247, 314, 391, 492
AclWI GGATC 3 cut(s) 370, 372, 566
AcoI YGGCCR 2 cut(s) 57, 92
AcsI RAATTY 1 cut(s) 676
AfaI GTAC 1 cut(s) 108
AflIII ACRYGT 2 cut(s) 18, 251
AgsI TTSAA 2 cut(s) 164, 682
AjuI GAANNNNNNNTTGG 2 cut(s) 432, 464
AluBI AGCT 4 cut(s) 29, 311, 446, 525
AluI AGCT 4 cut(s) 29, 311, 446, 525
Alw26I GTCTC 1 cut(s) 288
AlwI GGATC 3 cut(s) 370, 372, 566
AoxI GGCC 3 cut(s) 57, 92, 432
ApoI RAATTY 1 cut(s) 676
AsuHPI GGTGA 1 cut(s) 286
BalI TGGCCA 1 cut(s) 59
BcoDI GTCTC 1 cut(s) 288
BfmI CTRYAG 1 cut(s) 30
BisI GCNGC 1 cut(s) 45
BlsI GCNGC 1 cut(s) 46
BmiI GGNNCC 1 cut(s) 266
BmsI GCATC 5 cut(s) 56, 378, 384, 538, 645
BoxI GACNNNNGTC 1 cut(s) 86
BpmI CTGGAG 1 cut(s) 270
BpuEI CTTGAG 1 cut(s) 611
BsaJI CCNNGG 1 cut(s) 54
BsaXI ACNNNNNCTCC 2 cut(s) 268, 298
Bse118I RCCGGY 1 cut(s) 658
Bse1I ACTGG 1 cut(s) 297
BseDI CCNNGG 1 cut(s) 54
BseGI GGATG 1 cut(s) 399
BseMII CTCAG 3 cut(s) 200, 576, 614
BseNI ACTGG 1 cut(s) 297
BseYI CCCAGC 1 cut(s) 355
BshFI GGCC 3 cut(s) 59, 94, 434
BsiSI CCGG 2 cut(s) 91, 659
BslFI GGGAC 1 cut(s) 485
BsmAI GTCTC 1 cut(s) 288
BsmBI CGTCTC 1 cut(s) 288
BsmFI GGGAC 1 cut(s) 485
BsnI GGCC 3 cut(s) 59, 94, 434
Bsp143I GATC 3 cut(s) 364, 375, 558
BspACI CCGC 5 cut(s) 45, 247, 314, 391, 492
BspANI GGCC 3 cut(s) 59, 94, 434
BspCNI CTCAG 3 cut(s) 199, 575, 613
BspLI GGNNCC 1 cut(s) 266
BspPI GGATC 3 cut(s) 370, 372, 566
BspQI GCTCTTC 1 cut(s) 159
BsrFI RCCGGY 1 cut(s) 658
BsrI ACTGG 1 cut(s) 297
BssAI RCCGGY 1 cut(s) 658
BssECI CCNNGG 1 cut(s) 54
BssMI GATC 3 cut(s) 364, 375, 558
BssT1I CCWWGG 1 cut(s) 54
Bst6I CTCTTC 2 cut(s) 117, 159
BstAPI GCANNNNNTGC 3 cut(s) 331, 352, 489
BstDEI CTNAG 4 cut(s) 186, 219, 562, 600
BstF5I GGATG 1 cut(s) 399
BstKTI GATC 3 cut(s) 367, 378, 561
BstMAI GTCTC 1 cut(s) 288
BstMBI GATC 3 cut(s) 364, 375, 558
BstMWI GCNNNNNNNGC 6 cut(s) 41, 50, 322, 331, 352, 489
BstNSI RCATGY 2 cut(s) 22, 255
BstPAI GACNNNNGTC 1 cut(s) 86
BstSFI CTRYAG 1 cut(s) 30
BstX2I RGATCY 1 cut(s) 558
BstYI RGATCY 1 cut(s) 558
BsuRI GGCC 3 cut(s) 59, 94, 434
BtsCI GGATG 1 cut(s) 399
BtsIMutI CAGTG 2 cut(s) 194, 304
Cfr10I RCCGGY 1 cut(s) 658
CseI GACGC 1 cut(s) 270
Csp6I GTAC 1 cut(s) 107
CviAII CATG 4 cut(s) 19, 170, 252, 347
CviQI GTAC 1 cut(s) 107
DdeI CTNAG 4 cut(s) 186, 219, 562, 600
DpnI GATC 3 cut(s) 366, 377, 560
DpnII GATC 3 cut(s) 364, 375, 558
EaeI YGGCCR 2 cut(s) 57, 92
Eam1104I CTCTTC 2 cut(s) 117, 159
EarI CTCTTC 2 cut(s) 117, 159
EciI GGCGGA 1 cut(s) 303
Eco130I CCWWGG 1 cut(s) 54
Eco32I GATATC 1 cut(s) 413
EcoRV GATATC 1 cut(s) 413
EcoT14I CCWWGG 1 cut(s) 54
EcoT22I ATGCAT 1 cut(s) 348
ErhI CCWWGG 1 cut(s) 54
Esp3I CGTCTC 1 cut(s) 288
FaeI CATG 4 cut(s) 22, 173, 255, 350
FaqI GGGAC 1 cut(s) 485
FatI CATG 4 cut(s) 18, 169, 251, 346
FauNDI CATATG 1 cut(s) 270
FblI GTMKAC 1 cut(s) 204
Fnu4HI GCNGC 1 cut(s) 45
FokI GGATG 1 cut(s) 406
Fsp4HI GCNGC 1 cut(s) 45
GluI GCNGC 1 cut(s) 45
GsaI CCCAGC 1 cut(s) 359
GsuI CTGGAG 1 cut(s) 270
HaeIII GGCC 3 cut(s) 59, 94, 434
HapII CCGG 2 cut(s) 91, 659
HgaI GACGC 1 cut(s) 270
Hin1II CATG 4 cut(s) 22, 173, 255, 350
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HinfI GANTC 1 cut(s) 598
HpaII CCGG 2 cut(s) 91, 659
HphI GGTGA 1 cut(s) 286
Hpy166II GTNNAC 2 cut(s) 205, 276
Hpy188I TCNGA 3 cut(s) 146, 529, 603
Hpy188III TCNNGA 5 cut(s) 13, 287, 368, 460, 628
Hpy8I GTNNAC 2 cut(s) 205, 276
HpyAV CCTTC 2 cut(s) 598, 676
HpyCH4V TGCA 4 cut(s) 4, 325, 346, 643
HpyF10VI GCNNNNNNNGC 6 cut(s) 41, 50, 322, 331, 352, 489
HpyF3I CTNAG 4 cut(s) 186, 219, 562, 600
Hsp92II CATG 4 cut(s) 22, 173, 255, 350
Kzo9I GATC 3 cut(s) 364, 375, 558
LguI GCTCTTC 1 cut(s) 159
LmnI GCTCC 1 cut(s) 316
LweI GCATC 5 cut(s) 56, 378, 384, 538, 645
MalI GATC 3 cut(s) 366, 377, 560
MboI GATC 3 cut(s) 364, 375, 558
MboII GAAGA 3 cut(s) 104, 176, 475
MfeI CAATTG 1 cut(s) 84
MflI RGATCY 1 cut(s) 558
MlsI TGGCCA 1 cut(s) 59
MluCI AATT 5 cut(s) 84, 570, 578, 644, 676
MluNI TGGCCA 1 cut(s) 59
MlyI GAGTC 1 cut(s) 592
MnlI CCTC 5 cut(s) 120, 223, 424, 549, 628
Mox20I TGGCCA 1 cut(s) 59
Mph1103I ATGCAT 1 cut(s) 348
MscI TGGCCA 1 cut(s) 59
MseI TTAA 6 cut(s) 153, 305, 320, 384, 486, 569
MslI CAYNNNNRTG 1 cut(s) 254
Msp20I TGGCCA 1 cut(s) 59
MspI CCGG 2 cut(s) 91, 659
MunI CAATTG 1 cut(s) 84
MwoI GCNNNNNNNGC 6 cut(s) 41, 50, 322, 331, 352, 489
NdeI CATATG 1 cut(s) 270
NdeII GATC 3 cut(s) 364, 375, 558
NlaIII CATG 4 cut(s) 22, 173, 255, 350
NlaIV GGNNCC 1 cut(s) 266
NsiI ATGCAT 1 cut(s) 348
NspI RCATGY 2 cut(s) 22, 255
PciI ACATGT 2 cut(s) 18, 251
PciSI GCTCTTC 1 cut(s) 159
PcsI WCGNNNNNNNCGW 1 cut(s) 432
PkrI GCNGC 1 cut(s) 46
PleI GAGTC 1 cut(s) 592
PpsI GAGTC 1 cut(s) 592
PscI ACATGT 2 cut(s) 18, 251
PshAI GACNNNNGTC 1 cut(s) 86
PspFI CCCAGC 1 cut(s) 355
PspN4I GGNNCC 1 cut(s) 266
PsuI RGATCY 1 cut(s) 558
RsaI GTAC 1 cut(s) 108
RsaNI GTAC 1 cut(s) 107
RseI CAYNNNNRTG 1 cut(s) 254
SalI GTCGAC 1 cut(s) 203
SapI GCTCTTC 1 cut(s) 159
SaqAI TTAA 6 cut(s) 153, 305, 320, 384, 486, 569
SatI GCNGC 1 cut(s) 45
Sau3AI GATC 3 cut(s) 364, 375, 558
SchI GAGTC 1 cut(s) 592
SetI ASST 7 cut(s) 31, 112, 234, 313, 448, 527, 609
SfaNI GCATC 5 cut(s) 56, 378, 384, 538, 645
SfcI CTRYAG 1 cut(s) 30
SmiMI CAYNNNNRTG 1 cut(s) 254
SmlI CTYRAG 1 cut(s) 626
SmoI CTYRAG 1 cut(s) 626
Sse9I AATT 5 cut(s) 84, 570, 578, 644, 676
SsiI CCGC 5 cut(s) 45, 247, 314, 391, 492
StyI CCWWGG 1 cut(s) 54
TaqI TCGA 2 cut(s) 204, 459
TasI AATT 5 cut(s) 84, 570, 578, 644, 676
TauI GCSGC 1 cut(s) 47
Tru1I TTAA 6 cut(s) 153, 305, 320, 384, 486, 569
Tru9I TTAA 6 cut(s) 153, 305, 320, 384, 486, 569
TscAI CASTG 2 cut(s) 194, 304
TspDTI ATGAA 6 cut(s) 108, 112, 148, 453, 507, 523
TspGWI ACGGA 1 cut(s) 405
TspRI CASTG 2 cut(s) 194, 304
XapI RAATTY 1 cut(s) 676
XceI RCATGY 2 cut(s) 22, 255
XmiI GTMKAC 1 cut(s) 204
Zsp2I ATGCAT 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.