RchiOBHm_Chr2g0125481

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001848
Physical Location & Seq
Forward (+)
39246474 .. 39247293
820 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49759

Sequence Viewer

Length: 267 bp
ATGGTCTCACACTTTAGCTTTCATTATGTTCAGAATTCTTTGAACATTCATTTTGGGATTGAGAGAGTATATAGAAGGAACAAGTATTCTGGTAACAAGTCGTCAAGTAATTCTATTTTACTGGTTGTTTTGGCGCCACTGTTCTGTTGTCTGTTGTTTAGTGCTATCTTCATCTGTTATTGTGATTTAGATGCTCATAACAGTGTGCTGTCGAATTCGTCAAGTGGTTTGGATTCAGCATATGATTCTGCTTTAACAGTTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

9.78

Weight (kDa)

6.87

Isoelectric Point (pI)

58.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 133
AcsI RAATTY 2 cut(s) 34, 214
AcyI GRCGYC 1 cut(s) 134
AgsI TTSAA 1 cut(s) 43
AluBI AGCT 1 cut(s) 18
AluI AGCT 1 cut(s) 18
Alw26I GTCTC 1 cut(s) 10
ApoI RAATTY 2 cut(s) 34, 214
AspLEI GCGC 1 cut(s) 136
BanI GGYRCC 1 cut(s) 133
BcoDI GTCTC 1 cut(s) 10
BfoI RGCGCY 1 cut(s) 137
BmiI GGNNCC 1 cut(s) 135
BmsI GCATC 1 cut(s) 181
BsaHI GRCGYC 1 cut(s) 134
BsaI GGTCTC 1 cut(s) 10
Bse1I ACTGG 1 cut(s) 126
BseNI ACTGG 1 cut(s) 126
BshNI GGYRCC 1 cut(s) 133
BsmAI GTCTC 1 cut(s) 10
Bso31I GGTCTC 1 cut(s) 10
BspLI GGNNCC 1 cut(s) 135
BspT107I GGYRCC 1 cut(s) 133
BspTNI GGTCTC 1 cut(s) 10
BsrI ACTGG 1 cut(s) 126
BssNI GRCGYC 1 cut(s) 134
Bst4CI ACNGT 3 cut(s) 141, 203, 259
BstACI GRCGYC 1 cut(s) 134
BstH2I RGCGCY 1 cut(s) 137
BstHHI GCGC 1 cut(s) 136
BstMAI GTCTC 1 cut(s) 10
BtsIMutI CAGTG 2 cut(s) 137, 208
CfoI GCGC 1 cut(s) 136
CviJI RGCY 1 cut(s) 18
CviKI_1 RGCY 1 cut(s) 18
DinI GGCGCC 1 cut(s) 135
Eco31I GGTCTC 1 cut(s) 10
EcoRI GAATTC 2 cut(s) 34, 214
EgeI GGCGCC 1 cut(s) 135
EheI GGCGCC 1 cut(s) 135
FaiI YATR 6 cut(s) 27, 70, 72, 198, 241, 243
FauNDI CATATG 1 cut(s) 241
FspEI CC 9 cut(s) 39, 40, 61, 75, 107, 116, 150, 210, 215
GlaI GCGC 1 cut(s) 135
HaeII RGCGCY 1 cut(s) 137
HhaI GCGC 1 cut(s) 136
Hin1I GRCGYC 1 cut(s) 134
Hin6I GCGC 1 cut(s) 134
HinP1I GCGC 1 cut(s) 134
HinfI GANTC 2 cut(s) 233, 245
Hpy188I TCNGA 1 cut(s) 33
HpyAV CCTTC 1 cut(s) 69
HpyCH4III ACNGT 3 cut(s) 141, 203, 259
Hsp92I GRCGYC 1 cut(s) 134
HspAI GCGC 1 cut(s) 134
KasI GGCGCC 1 cut(s) 133
LpnPI CCDG 2 cut(s) 75, 107
LweI GCATC 1 cut(s) 181
MaeIII GTNAC 1 cut(s) 92
MboII GAAGA 1 cut(s) 160
MluCI AATT 3 cut(s) 34, 109, 214
Mly113I GGCGCC 1 cut(s) 134
MseI TTAA 1 cut(s) 254
MslI CAYNNNNRTG 1 cut(s) 201
NarI GGCGCC 1 cut(s) 134
NdeI CATATG 1 cut(s) 241
NlaIV GGNNCC 1 cut(s) 135
PfeI GAWTC 2 cut(s) 233, 245
PluTI GGCGCC 1 cut(s) 137
PspN4I GGNNCC 1 cut(s) 135
RseI CAYNNNNRTG 1 cut(s) 201
SaqAI TTAA 1 cut(s) 254
SetI ASST 1 cut(s) 20
SfaNI GCATC 1 cut(s) 181
SfoI GGCGCC 1 cut(s) 135
SgeI CNNG 6 cut(s) 94, 102, 109, 117, 134, 234
SmiMI CAYNNNNRTG 1 cut(s) 201
Sse9I AATT 3 cut(s) 34, 109, 214
SspDI GGCGCC 1 cut(s) 133
TaaI ACNGT 3 cut(s) 141, 203, 259
TaqI TCGA 1 cut(s) 212
TasI AATT 3 cut(s) 34, 109, 214
TfiI GAWTC 2 cut(s) 233, 245
Tru1I TTAA 1 cut(s) 254
Tru9I TTAA 1 cut(s) 254
TscAI CASTG 2 cut(s) 144, 208
TspDTI ATGAA 3 cut(s) 11, 38, 160
TspRI CASTG 2 cut(s) 144, 208
XapI RAATTY 2 cut(s) 34, 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.