Rroxscaffold_6G00395760

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0001848
Physical Location & Seq
Reverse (-)
16918177 .. 16923943
5767 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00395760.1

Sequence Viewer

Length: 321 bp
ATGCAAAAGCATTTACACATCGTTCTGCTGCCACTGTTCCTTTGTGTATTGGTTAACACTATCTTGATCTCTTATTCTTATTCAGTTATGGCTTCAAAGACGAGGTGGTCAAGAAGTAAGAGATTGTTACAGGAGTATGAAGATGAAAATCATAATGCTGAAAGGGAAGTCCAAGAAATATCTAATGACCAGATTGCAATTGGTAGTATATCTGAAACTAGAACCGCAGTTTATGGTAGGGACGAAGACCATCAAATTCATCCAAGATCAAGGCGTGCATCTGAGTTGAGGATGAGAAAAAGGGGACCGACATTTAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

12.51

Weight (kDa)

9.57

Isoelectric Point (pI)

62.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 106
AciI CCGC 1 cut(s) 225
AcsI RAATTY 1 cut(s) 255
AgsI TTSAA 1 cut(s) 96
ApeKI GCWGC 1 cut(s) 28
ApoI RAATTY 1 cut(s) 255
AspS9I GGNCC 1 cut(s) 305
AvaII GGWCC 1 cut(s) 305
BbsI GAAGAC 1 cut(s) 252
BbvI GCAGC 1 cut(s) 15
BccI CCATC 1 cut(s) 258
BfaI CTAG 1 cut(s) 219
BisI GCNGC 1 cut(s) 29
BlsI GCNGC 1 cut(s) 30
Bme18I GGWCC 1 cut(s) 305
BmgT120I GGNCC 1 cut(s) 305
BmiI GGNNCC 1 cut(s) 306
BmsI GCATC 1 cut(s) 287
BpiI GAAGAC 1 cut(s) 252
BsaBI GATNNNNATC 1 cut(s) 147
Bse8I GATNNNNATC 1 cut(s) 147
BseGI GGATG 2 cut(s) 259, 297
BseJI GATNNNNATC 1 cut(s) 147
BseMII CTCAG 1 cut(s) 273
BseXI GCAGC 1 cut(s) 15
BslFI GGGAC 1 cut(s) 254
BsmFI GGGAC 1 cut(s) 254
Bsp143I GATC 2 cut(s) 66, 266
BspACI CCGC 1 cut(s) 225
BspCNI CTCAG 1 cut(s) 274
BspLI GGNNCC 1 cut(s) 306
BssMI GATC 2 cut(s) 66, 266
Bst4CI ACNGT 1 cut(s) 36
BstC8I GCNNGC 1 cut(s) 276
BstDEI CTNAG 1 cut(s) 282
BstF5I GGATG 2 cut(s) 259, 297
BstKTI GATC 2 cut(s) 69, 269
BstMBI GATC 2 cut(s) 66, 266
BstV1I GCAGC 1 cut(s) 15
BstV2I GAAGAC 1 cut(s) 252
BtsCI GGATG 2 cut(s) 259, 297
BtsIMutI CAGTG 1 cut(s) 32
Cac8I GCNNGC 1 cut(s) 276
Cfr13I GGNCC 1 cut(s) 305
CviJI RGCY 1 cut(s) 92
CviKI_1 RGCY 1 cut(s) 92
DdeI CTNAG 1 cut(s) 282
DpnI GATC 2 cut(s) 68, 268
DpnII GATC 2 cut(s) 66, 266
DrdI GACNNNNNNGTC 1 cut(s) 106
DseDI GACNNNNNNGTC 1 cut(s) 106
Eco47I GGWCC 1 cut(s) 305
FaiI YATR 5 cut(s) 89, 138, 153, 209, 234
FaqI GGGAC 1 cut(s) 254
Fnu4HI GCNGC 1 cut(s) 29
FokI GGATG 2 cut(s) 246, 304
Fsp4HI GCNGC 1 cut(s) 29
FspBI CTAG 1 cut(s) 219
GluI GCNGC 1 cut(s) 29
HincII GTYRAC 1 cut(s) 55
HindII GTYRAC 1 cut(s) 55
HpaI GTTAAC 1 cut(s) 55
Hpy166II GTNNAC 1 cut(s) 55
Hpy188I TCNGA 2 cut(s) 214, 283
Hpy188III TCNNGA 2 cut(s) 64, 111
Hpy8I GTNNAC 1 cut(s) 55
HpyCH4III ACNGT 1 cut(s) 36
HpyCH4V TGCA 3 cut(s) 4, 197, 278
HpyF3I CTNAG 1 cut(s) 282
KspAI GTTAAC 1 cut(s) 55
Kzo9I GATC 2 cut(s) 66, 266
LpnPI CCDG 2 cut(s) 116, 203
Lsp1109I GCAGC 1 cut(s) 15
LweI GCATC 1 cut(s) 287
MaeI CTAG 1 cut(s) 219
MaeIII GTNAC 1 cut(s) 126
MalI GATC 2 cut(s) 68, 268
MboI GATC 2 cut(s) 66, 266
MboII GAAGA 2 cut(s) 152, 257
MfeI CAATTG 1 cut(s) 198
MluCI AATT 2 cut(s) 198, 255
MnlI CCTC 2 cut(s) 96, 282
MseI TTAA 1 cut(s) 54
MunI CAATTG 1 cut(s) 198
NdeII GATC 2 cut(s) 66, 266
NlaIV GGNNCC 1 cut(s) 306
PkrI GCNGC 1 cut(s) 30
PspN4I GGNNCC 1 cut(s) 306
PspPI GGNCC 1 cut(s) 305
SaqAI TTAA 1 cut(s) 54
SatI GCNGC 1 cut(s) 29
Sau3AI GATC 2 cut(s) 66, 266
Sau96I GGNCC 1 cut(s) 305
SetI ASST 1 cut(s) 107
SfaNI GCATC 1 cut(s) 287
SinI GGWCC 1 cut(s) 305
Sse9I AATT 2 cut(s) 198, 255
SsiI CCGC 1 cut(s) 225
SspMI CTAG 1 cut(s) 219
TaaI ACNGT 1 cut(s) 36
TasI AATT 2 cut(s) 198, 255
Tru1I TTAA 1 cut(s) 54
Tru9I TTAA 1 cut(s) 54
TscAI CASTG 1 cut(s) 39
TseI GCWGC 1 cut(s) 28
TspDTI ATGAA 3 cut(s) 153, 159, 248
TspRI CASTG 1 cut(s) 39
VpaK11BI GGWCC 1 cut(s) 305
XapI RAATTY 1 cut(s) 255
XcmI CCANNNNNNNNNTGG 1 cut(s) 197
XspI CTAG 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.