Rh2BG324100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001848
Physical Location & Seq
Forward (+)
39348023 .. 39367977
19955 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG324100.1

Sequence Viewer

Length: 258 bp
ATGCAAGATTCTATTTTACTGGTTGTTTTGGCGCCACTGTTCTGTTGTCTGTTGTTTAGTGCTATCTTCATCTGTTATTGTGATTTAGATGCTCATAACAGTGTGCTGTCGAATTCGTCAAGTGGTTTGGATTCAGTTATGGCTCCGAAGACCCGGGCGACAAGGAAAAAAAGATTGATCAGTCTTTCCAAATTCACCGTAGTTATGGAAGCATGCTCGAGGGTGAGGCTGATGAACTCAAGGAATCCATATTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

9.53

Weight (kDa)

9.19

Isoelectric Point (pI)

50.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 31
AcsI RAATTY 2 cut(s) 112, 191
AcyI GRCGYC 1 cut(s) 32
Ama87I CYCGRG 2 cut(s) 153, 217
ApoI RAATTY 2 cut(s) 112, 191
AspLEI GCGC 1 cut(s) 34
AsuC2I CCSGG 2 cut(s) 154, 155
AsuHPI GGTGA 2 cut(s) 187, 235
AvaI CYCGRG 2 cut(s) 153, 217
BanI GGYRCC 1 cut(s) 31
BbsI GAAGAC 1 cut(s) 155
BclI TGATCA 1 cut(s) 177
BcnI CCSGG 2 cut(s) 154, 155
BfoI RGCGCY 1 cut(s) 35
Bme1390I CCNGG 2 cut(s) 154, 155
BmeT110I CYCGRG 2 cut(s) 153, 217
BmiI GGNNCC 2 cut(s) 33, 144
BmrFI CCNGG 2 cut(s) 154, 155
BmsI GCATC 1 cut(s) 79
BpiI GAAGAC 1 cut(s) 155
BpuEI CTTGAG 1 cut(s) 223
BpuMI CCSGG 2 cut(s) 154, 155
BsaHI GRCGYC 1 cut(s) 32
BsaJI CCNNGG 1 cut(s) 153
Bse1I ACTGG 1 cut(s) 24
BseDI CCNNGG 1 cut(s) 153
BseNI ACTGG 1 cut(s) 24
BshNI GGYRCC 1 cut(s) 31
BsiHKCI CYCGRG 2 cut(s) 153, 217
BsiSI CCGG 1 cut(s) 154
BsoBI CYCGRG 2 cut(s) 153, 217
Bsp143I GATC 1 cut(s) 177
BspLI GGNNCC 2 cut(s) 33, 144
BspT107I GGYRCC 1 cut(s) 31
BsrI ACTGG 1 cut(s) 24
BssECI CCNNGG 1 cut(s) 153
BssMI GATC 1 cut(s) 177
BssNI GRCGYC 1 cut(s) 32
Bst4CI ACNGT 3 cut(s) 39, 101, 199
BstACI GRCGYC 1 cut(s) 32
BstC8I GCNNGC 1 cut(s) 214
BstH2I RGCGCY 1 cut(s) 35
BstHHI GCGC 1 cut(s) 34
BstKTI GATC 1 cut(s) 180
BstMBI GATC 1 cut(s) 177
BstNSI RCATGY 1 cut(s) 216
BstSCI CCNGG 2 cut(s) 152, 153
BstV2I GAAGAC 1 cut(s) 155
BtsIMutI CAGTG 2 cut(s) 35, 106
Cac8I GCNNGC 1 cut(s) 214
CfoI GCGC 1 cut(s) 34
Cfr9I CCCGGG 1 cut(s) 153
CviAII CATG 1 cut(s) 213
CviJI RGCY 2 cut(s) 143, 229
CviKI_1 RGCY 2 cut(s) 143, 229
DinI GGCGCC 1 cut(s) 33
DpnI GATC 1 cut(s) 179
DpnII GATC 1 cut(s) 177
Eco88I CYCGRG 2 cut(s) 153, 217
EcoRI GAATTC 1 cut(s) 112
EgeI GGCGCC 1 cut(s) 33
EheI GGCGCC 1 cut(s) 33
FaeI CATG 1 cut(s) 216
FaiI YATR 5 cut(s) 96, 140, 206, 214, 250
FatI CATG 1 cut(s) 212
FbaI TGATCA 1 cut(s) 177
GlaI GCGC 1 cut(s) 33
HaeII RGCGCY 1 cut(s) 35
HapII CCGG 1 cut(s) 154
HhaI GCGC 1 cut(s) 34
Hin1I GRCGYC 1 cut(s) 32
Hin1II CATG 1 cut(s) 216
Hin6I GCGC 1 cut(s) 32
HinP1I GCGC 1 cut(s) 32
HinfI GANTC 3 cut(s) 8, 131, 244
HpaII CCGG 1 cut(s) 154
HphI GGTGA 2 cut(s) 187, 235
Hpy188I TCNGA 1 cut(s) 147
HpyCH4III ACNGT 3 cut(s) 39, 101, 199
HpyCH4V TGCA 1 cut(s) 4
Hsp92I GRCGYC 1 cut(s) 32
Hsp92II CATG 1 cut(s) 216
HspAI GCGC 1 cut(s) 32
KasI GGCGCC 1 cut(s) 31
Ksp22I TGATCA 1 cut(s) 177
Kzo9I GATC 1 cut(s) 177
LmnI GCTCC 1 cut(s) 148
LpnPI CCDG 2 cut(s) 5, 167
LweI GCATC 1 cut(s) 79
MalI GATC 1 cut(s) 179
MboI GATC 1 cut(s) 177
MboII GAAGA 2 cut(s) 58, 160
MluCI AATT 2 cut(s) 112, 191
Mly113I GGCGCC 1 cut(s) 32
MnlI CCTC 2 cut(s) 213, 219
MseI TTAA 1 cut(s) 256
MslI CAYNNNNRTG 1 cut(s) 99
MspI CCGG 1 cut(s) 154
MspR9I CCNGG 2 cut(s) 154, 155
NarI GGCGCC 1 cut(s) 32
NciI CCSGG 2 cut(s) 154, 155
NdeII GATC 1 cut(s) 177
NlaIII CATG 1 cut(s) 216
NlaIV GGNNCC 2 cut(s) 33, 144
NspI RCATGY 1 cut(s) 216
PaeI GCATGC 1 cut(s) 216
PaeR7I CTCGAG 1 cut(s) 217
PfeI GAWTC 3 cut(s) 8, 131, 244
PluTI GGCGCC 1 cut(s) 35
PspN4I GGNNCC 2 cut(s) 33, 144
PspXI VCTCGAGB 1 cut(s) 217
RseI CAYNNNNRTG 1 cut(s) 99
SaqAI TTAA 1 cut(s) 256
Sau3AI GATC 1 cut(s) 177
ScrFI CCNGG 2 cut(s) 154, 155
SfaNI GCATC 1 cut(s) 79
SfoI GGCGCC 1 cut(s) 33
Sfr274I CTCGAG 1 cut(s) 217
SlaI CTCGAG 1 cut(s) 217
SmaI CCCGGG 1 cut(s) 155
SmiMI CAYNNNNRTG 1 cut(s) 99
SmlI CTYRAG 2 cut(s) 217, 238
SmoI CTYRAG 2 cut(s) 217, 238
SphI GCATGC 1 cut(s) 216
Sse9I AATT 2 cut(s) 112, 191
SspDI GGCGCC 1 cut(s) 31
StyD4I CCNGG 2 cut(s) 152, 153
TaaI ACNGT 3 cut(s) 39, 101, 199
TaqI TCGA 2 cut(s) 110, 218
TasI AATT 2 cut(s) 112, 191
TfiI GAWTC 3 cut(s) 8, 131, 244
Tru1I TTAA 1 cut(s) 256
Tru9I TTAA 1 cut(s) 256
TscAI CASTG 2 cut(s) 42, 106
TspDTI ATGAA 2 cut(s) 58, 248
TspMI CCCGGG 1 cut(s) 153
TspRI CASTG 2 cut(s) 42, 106
XapI RAATTY 2 cut(s) 112, 191
XceI RCATGY 1 cut(s) 216
XhoI CTCGAG 1 cut(s) 217
XmaI CCCGGG 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.