Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001848

Physical Location & Seq

Genomic Coordinates Forward (+)

42555317 .. 42561605

Gene Structure 6289 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00421380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGCAAAACCGTTTACACATCGTTCTGCTGCCACTGTTCCTTTGTGTATTGGTTAACACTATCTTGATCTCTCATTCTTATTTAGATTGTTGGAACAGTGTGCAGTCAGATTGTTTAACTGCTTTGAATTCAGTTATGGCTCCAAAGATGAGGTGGACAAGAAGTAAGAGATTGTTACAGGAGTATGAAGATGAAAATCATAATGCTGAAAGGAAGTCCAAGAAATATCTAATGACCAGAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

81

Amino Acids

9.64

Weight (kDa)

9.22

Isoelectric Point (pI)

60.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001848)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0344671 RchiOBHm_Chr2g0103891 RchiOBHm_Chr2g0125481 RchiOBHm_Chr2g0127991 RchiOBHm_Chr4g0404361 RchiOBHm_Chr6g0293921 RchiOBHm_Chr7g0183991 RchiOBHm_Chr7g0200701 RchiOBHm_Chr7g0203451 RchiOBHm_Chr7g0233851
rosa_laevigata	RLG00000009445
rosa_multiflora	Rmu_sc0001762.1_g000048 Rmu_ssc0000198.1_g000001
rosa_roxburghii	Rroxscaffold_176G00431470 Rroxscaffold_1G00006800 Rroxscaffold_1G00038540 Rroxscaffold_1G00072610 Rroxscaffold_2G00078350 Rroxscaffold_2G00079900 Rroxscaffold_2G00125220 Rroxscaffold_3G00246630 Rroxscaffold_4G00306170 Rroxscaffold_4G00314800 Rroxscaffold_4G00317460 Rroxscaffold_4G00319930 Rroxscaffold_5G00343110 Rroxscaffold_6G00395760 Rroxscaffold_6G00421380 Rroxscaffold_7G00160650
rosa_rugosa	Rorug01G0217800 Rorug03G0274300 Rorug04G0088400 Rorug05G0172900 Rorug07G0221500
rosa_samantha	Rh1BG311700 Rh1DG110800 Rh2AG655300 Rh2BG324100 Rh2BG414100 Rh2DG254900 Rh3DG077200 Rh4BG304400 Rh5DG244400 Rh7BG056200
rosa_wichuraiana	Rw1G008450 Rw2G032850 Rw4G008300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	127
AgsI	TTSAA	1 cut(s)	127
ApeKI	GCWGC	1 cut(s)	28
ApoI	RAATTY	1 cut(s)	127
BbvI	GCAGC	1 cut(s)	15
BisI	GCNGC	1 cut(s)	29
BlsI	GCNGC	1 cut(s)	30
BmiI	GGNNCC	1 cut(s)	141
BsaBI	GATNNNNATC	1 cut(s)	195
Bse8I	GATNNNNATC	1 cut(s)	195
BseJI	GATNNNNATC	1 cut(s)	195
BseXI	GCAGC	1 cut(s)	15
BsgI	GTGCAG	1 cut(s)	122
Bsp143I	GATC	1 cut(s)	66
BspLI	GGNNCC	1 cut(s)	141
BssMI	GATC	1 cut(s)	66
Bst4CI	ACNGT	3 cut(s)	11, 36, 98
BstKTI	GATC	1 cut(s)	69
BstMBI	GATC	1 cut(s)	66
BstV1I	GCAGC	1 cut(s)	15
BtsIMutI	CAGTG	2 cut(s)	32, 103
CviJI	RGCY	1 cut(s)	140
CviKI_1	RGCY	1 cut(s)	140
DpnI	GATC	1 cut(s)	68
DpnII	GATC	1 cut(s)	66
EcoRI	GAATTC	1 cut(s)	127
FaiI	YATR	3 cut(s)	137, 186, 201
Fnu4HI	GCNGC	1 cut(s)	29
Fsp4HI	GCNGC	1 cut(s)	29
GluI	GCNGC	1 cut(s)	29
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HpaI	GTTAAC	1 cut(s)	55
Hpy166II	GTNNAC	3 cut(s)	14, 55, 156
Hpy188I	TCNGA	1 cut(s)	109
Hpy188III	TCNNGA	1 cut(s)	64
Hpy8I	GTNNAC	3 cut(s)	14, 55, 156
HpyCH4III	ACNGT	3 cut(s)	11, 36, 98
HpyCH4V	TGCA	2 cut(s)	4, 103
KspAI	GTTAAC	1 cut(s)	55
Kzo9I	GATC	1 cut(s)	66
LmnI	GCTCC	1 cut(s)	145
LpnPI	CCDG	1 cut(s)	164
Lsp1109I	GCAGC	1 cut(s)	15
MaeIII	GTNAC	1 cut(s)	174
MalI	GATC	1 cut(s)	68
MboI	GATC	1 cut(s)	66
MboII	GAAGA	1 cut(s)	200
MluCI	AATT	1 cut(s)	127
MmeI	TCCRAC	1 cut(s)	71
MnlI	CCTC	1 cut(s)	144
MseI	TTAA	2 cut(s)	54, 116
NdeII	GATC	1 cut(s)	66
NlaIV	GGNNCC	1 cut(s)	141
PkrI	GCNGC	1 cut(s)	30
PspN4I	GGNNCC	1 cut(s)	141
SaqAI	TTAA	2 cut(s)	54, 116
SatI	GCNGC	1 cut(s)	29
Sau3AI	GATC	1 cut(s)	66
SetI	ASST	1 cut(s)	155
SgeI	CNNG	4 cut(s)	76, 171, 191, 232
Sse9I	AATT	1 cut(s)	127
TaaI	ACNGT	3 cut(s)	11, 36, 98
TasI	AATT	1 cut(s)	127
Tru1I	TTAA	2 cut(s)	54, 116
Tru9I	TTAA	2 cut(s)	54, 116
TscAI	CASTG	2 cut(s)	39, 103
TseI	GCWGC	1 cut(s)	28
TspDTI	ATGAA	2 cut(s)	201, 207
TspRI	CASTG	2 cut(s)	39, 103
XapI	RAATTY	1 cut(s)	127
XcmI	CCANNNNNNNNNTGG	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.