RLG00000009445

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001848
Physical Location & Seq
Reverse (-)
52964456 .. 52964852
397 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009445

Sequence Viewer

Length: 312 bp
ATGGCAGTTGAGCTTGCTCCTGTCTTGTGGGATTTATGGGATTTGAGGCAGCAGGGAATTGTCGAAGATCGGGCTCTAGTTCAAAGCTCCGCGGAGGCAAGGTCTTGTGGCATCGATGCAAGGGACGACGTCAGGTGGCGTGGTTCGGGTTTGCTTGTTCCGATTCTCTCCAGCGGTGGCGGCTCTACGGTTATTTATGGGTGGTACTGTCGAGGTGGCGTGGTGGTGTCTGCTTGTGTTGGTATGGCGGCGGGTGGAGTTGTCACGTCGGCGGCGCGTTTGGTGGCTTTGGCTAAAGGGAGTGGAGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

10.58

Weight (kDa)

6.11

Isoelectric Point (pI)

55.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 132
AccII CGCG 2 cut(s) 92, 277
AciI CCGC 7 cut(s) 90, 92, 174, 180, 248, 251, 272
AcyI GRCGYC 1 cut(s) 129
AfaI GTAC 1 cut(s) 206
AgsI TTSAA 1 cut(s) 83
AjiI CACGTC 1 cut(s) 267
AluBI AGCT 2 cut(s) 13, 87
AluI AGCT 2 cut(s) 13, 87
ApeKI GCWGC 1 cut(s) 49
AspLEI GCGC 1 cut(s) 277
BanII GRGCYC 1 cut(s) 76
BbvI GCAGC 1 cut(s) 61
BfaI CTAG 2 cut(s) 77, 310
BisI GCNGC 4 cut(s) 50, 181, 249, 273
BlsI GCNGC 4 cut(s) 51, 182, 250, 274
BmgBI CACGTC 1 cut(s) 267
BmsI GCATC 2 cut(s) 106, 120
BpmI CTGGAG 1 cut(s) 154
Bsa29I ATCGAT 1 cut(s) 114
BsaHI GRCGYC 1 cut(s) 129
BsaJI CCNNGG 1 cut(s) 90
BsaXI ACNNNNNCTCC 2 cut(s) 86, 116
BseCI ATCGAT 1 cut(s) 114
BseDI CCNNGG 1 cut(s) 90
BseXI GCAGC 1 cut(s) 61
Bsh1236I CGCG 2 cut(s) 92, 277
BshVI ATCGAT 1 cut(s) 114
BslFI GGGAC 1 cut(s) 137
BsmFI GGGAC 1 cut(s) 137
Bsp1286I GDGCHC 1 cut(s) 76
Bsp143I GATC 1 cut(s) 67
BspACI CCGC 7 cut(s) 90, 92, 174, 180, 248, 251, 272
BspDI ATCGAT 1 cut(s) 114
BspFNI CGCG 2 cut(s) 92, 277
BssECI CCNNGG 1 cut(s) 90
BssMI GATC 1 cut(s) 67
BssNI GRCGYC 1 cut(s) 129
Bst4CI ACNGT 2 cut(s) 190, 209
BstACI GRCGYC 1 cut(s) 129
BstC8I GCNNGC 1 cut(s) 15
BstDSI CCRYGG 1 cut(s) 90
BstFNI CGCG 2 cut(s) 92, 277
BstHHI GCGC 1 cut(s) 277
BstKTI GATC 1 cut(s) 70
BstMBI GATC 1 cut(s) 67
BstMWI GCNNNNNNNGC 1 cut(s) 180
BstUI CGCG 2 cut(s) 92, 277
BstV1I GCAGC 1 cut(s) 61
Bsu15I ATCGAT 1 cut(s) 114
BsuTUI ATCGAT 1 cut(s) 114
BtgI CCRYGG 1 cut(s) 90
BtrI CACGTC 1 cut(s) 267
Cac8I GCNNGC 1 cut(s) 15
CfoI GCGC 1 cut(s) 277
Cfr42I CCGCGG 1 cut(s) 93
ClaI ATCGAT 1 cut(s) 114
Csp6I GTAC 1 cut(s) 205
CviJI RGCY 7 cut(s) 13, 74, 87, 183, 287, 293, 309
CviKI_1 RGCY 7 cut(s) 13, 74, 87, 183, 287, 293, 309
CviQI GTAC 1 cut(s) 205
DpnI GATC 1 cut(s) 69
DpnII GATC 1 cut(s) 67
Eco24I GRGCYC 1 cut(s) 76
EcoT38I GRGCYC 1 cut(s) 76
FaiI YATR 3 cut(s) 37, 198, 245
FaqI GGGAC 1 cut(s) 137
FauI CCCGC 1 cut(s) 244
Fnu4HI GCNGC 4 cut(s) 50, 181, 249, 273
FriOI GRGCYC 1 cut(s) 76
Fsp4HI GCNGC 4 cut(s) 50, 181, 249, 273
FspBI CTAG 2 cut(s) 77, 310
GlaI GCGC 1 cut(s) 276
GluI GCNGC 4 cut(s) 50, 181, 249, 273
GsuI CTGGAG 1 cut(s) 154
HhaI GCGC 1 cut(s) 277
Hin1I GRCGYC 1 cut(s) 129
Hin6I GCGC 1 cut(s) 275
HinP1I GCGC 1 cut(s) 275
HinfI GANTC 1 cut(s) 163
Hpy188I TCNGA 1 cut(s) 162
Hpy99I CGWCG 2 cut(s) 131, 271
HpyCH4III ACNGT 2 cut(s) 190, 209
HpyCH4IV ACGT 2 cut(s) 129, 266
HpyCH4V TGCA 1 cut(s) 119
HpyF10VI GCNNNNNNNGC 1 cut(s) 180
HpySE526I ACGT 2 cut(s) 129, 266
Hsp92I GRCGYC 1 cut(s) 129
HspAI GCGC 1 cut(s) 275
KspI CCGCGG 1 cut(s) 93
Kzo9I GATC 1 cut(s) 67
LmnI GCTCC 2 cut(s) 22, 92
LpnPI CCDG 4 cut(s) 33, 38, 118, 184
Lsp1109I GCAGC 1 cut(s) 61
LweI GCATC 2 cut(s) 106, 120
MaeI CTAG 2 cut(s) 77, 310
MaeII ACGT 2 cut(s) 129, 266
MaeIII GTNAC 1 cut(s) 262
MalI GATC 1 cut(s) 69
MboI GATC 1 cut(s) 67
MboII GAAGA 1 cut(s) 77
MhlI GDGCHC 1 cut(s) 76
MluCI AATT 1 cut(s) 57
MnlI CCTC 4 cut(s) 39, 88, 206, 299
MspA1I CMGCKG 2 cut(s) 92, 174
MvnI CGCG 2 cut(s) 92, 277
MwoI GCNNNNNNNGC 1 cut(s) 180
NdeII GATC 1 cut(s) 67
NmuCI GTSAC 1 cut(s) 262
PfeI GAWTC 1 cut(s) 163
PflFI GACNNNGTC 1 cut(s) 128
PkrI GCNGC 4 cut(s) 51, 182, 250, 274
PsyI GACNNNGTC 1 cut(s) 128
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
SacII CCGCGG 1 cut(s) 93
SatI GCNGC 4 cut(s) 50, 181, 249, 273
Sau3AI GATC 1 cut(s) 67
SduI GDGCHC 1 cut(s) 76
SetI ASST 7 cut(s) 15, 89, 104, 132, 137, 217, 269
SfaNI GCATC 2 cut(s) 106, 120
Sfr303I CCGCGG 1 cut(s) 93
SgrBI CCGCGG 1 cut(s) 93
Sse9I AATT 1 cut(s) 57
SsiI CCGC 7 cut(s) 90, 92, 174, 180, 248, 251, 272
SspMI CTAG 2 cut(s) 77, 310
TaaI ACNGT 2 cut(s) 190, 209
TaiI ACGT 2 cut(s) 132, 269
TaqI TCGA 3 cut(s) 63, 114, 211
TasI AATT 1 cut(s) 57
TauI GCSGC 3 cut(s) 183, 251, 275
TfiI GAWTC 1 cut(s) 163
TseFI GTSAC 1 cut(s) 262
TseI GCWGC 1 cut(s) 49
Tsp45I GTSAC 1 cut(s) 262
Tth111I GACNNNGTC 1 cut(s) 128
XspI CTAG 2 cut(s) 77, 310
ZraI GACGTC 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.