AT3G03760

lob domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0015242
Physical Location & Seq
Forward (+)
943557 .. 944834
1278 bp
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UTR
Exon/CDS
Intron
AT3G03760.1

Sequence Viewer

Length: 822 bp
ATGGCTGATCAGCAGCGAGGCCACAACACCTCAGATTCTCGCCGGAAATCTCTAGCCGGAAAAAGAACCTCACAGCAAACTCCGACGTCATCACTTAGTTCCGGCGGAGTATCCATGGCAGCTGCAACGACGGGGACAGGGACGGCTTCGCCTTGTGGGGCTTGCAAGTTCTTGAGAAGGAAGTGTGTGAGTGGATGCATTTTCGCTCCACATTTTGGGTCAGACCAAGGAGCGGCTAGGTTCGCGGCGGTTCATAAGGTTTTCGGAGCCAGCAACGTGTCGAAACTGTTGCATCATATTCCGGTGAACCGTCGTCATGATGCGGTGGTTACGATCTCATACGAGGCTCAAGCTAGGCTCTCTGATCCTGTCTATGGCTGCGTCTCAACCATCCTTGCTCTCCAACAACAGGTGGCCTCGCTACAGGCGGAGTTATCGGTGGTGCAATCACAACTGATAAACAGTAGAGTCGCAATGGCCAACGTTATGCAACAACAAACTCATCACCAACAACAGCAACAACAATTAGTCGTTATGCAACAACCCGAATACTCCAACAACTCCTCCGCCTCCACCACTCTCGCCGGAGCCGCCATGAACAGCTTCACCATGACGGCAGATGCAGCAGCCGTCAGCTATGACGTCATGGCTCCGACTAACTTAGAACATTCGTTGCAGCCAATGCCACCGCATCAGCAAAGGAGAGGAGATTATCAGCATGAGGATGAGGAAGAGAGCGGTGCTGATTTTTCGGTGGCTGTTGGATCGACGGCGGTGGCTTCGAAGGTTATATTTCCGGCGGAGGATTTTCACCGGAGATGA

Protein Analysis

273

Amino Acids

29.29

Weight (kDa)

8.32

Isoelectric Point (pI)

55.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 51 - 149 9.7e-36 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015242)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03760
malus_domestica MD11G1229500.v1.1 MD12G1009400.v1.1 MD14G1006900.v1.1
prunus_persica Prupe.7G011300_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0496241
rosa_laevigata RLG00000022544
rosa_multiflora Rmu_sc0004080.1_g000014 Rmu_ssc0000454.1_g000007
rosa_roxburghii Rroxscaffold_6G00389310
rosa_rugosa Rorug03G0281000
rosa_samantha Rh3AG327900 Rh3BG364100 Rh3CG361000 Rh3DG364000
rosa_wichuraiana Rw3G028720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 89, 645
AccB7I CCANNNNNTGG 1 cut(s) 215
AccBSI CCGCTC 2 cut(s) 233, 738
AccII CGCG 1 cut(s) 245
AclI AACGTT 1 cut(s) 483
AclWI GGATC 2 cut(s) 359, 772
AcoI YGGCCR 1 cut(s) 477
AcyI GRCGYC 2 cut(s) 86, 642
AfiI CCNNNNNNNGG 4 cut(s) 215, 232, 374, 409
AflIII ACRYGT 1 cut(s) 276
AluBI AGCT 4 cut(s) 122, 353, 603, 636
AluI AGCT 4 cut(s) 122, 353, 603, 636
Alw26I GTCTC 1 cut(s) 388
AlwI GGATC 2 cut(s) 359, 772
AoxI GGCC 3 cut(s) 19, 414, 477
ApeKI GCWGC 7 cut(s) 13, 119, 122, 378, 623, 626, 676
Asp700I GAANNNNTTC 1 cut(s) 602
AsuHPI GGTGA 4 cut(s) 316, 497, 598, 803
AsuII TTCGAA 1 cut(s) 782
BalI TGGCCA 1 cut(s) 479
BbvI GCAGC 7 cut(s) 25, 109, 131, 365, 635, 638, 688
BccI CCATC 1 cut(s) 398
BceAI ACGGC 4 cut(s) 159, 614, 630, 786
BcgI CGANNNNNNTGC 2 cut(s) 271, 305
BciVI GTATCC 1 cut(s) 121
BclI TGATCA 1 cut(s) 7
BcoDI GTCTC 1 cut(s) 388
BfaI CTAG 3 cut(s) 53, 237, 354
BfmI CTRYAG 1 cut(s) 422
BfuI GTATCC 1 cut(s) 121
BmiI GGNNCC 3 cut(s) 268, 589, 651
BmsI GCATC 5 cut(s) 185, 301, 310, 610, 700
Bpu14I TTCGAA 1 cut(s) 782
BpuEI CTTGAG 2 cut(s) 193, 333
BsaHI GRCGYC 2 cut(s) 86, 642
BsaJI CCNNGG 2 cut(s) 114, 226
BsaWI WCCGGW 2 cut(s) 301, 813
BsaXI ACNNNNNCTCC 2 cut(s) 548, 578
Bsc4I CCNNNNNNNGG 4 cut(s) 215, 232, 374, 409
Bse3DI GCAATG 1 cut(s) 480
BseDI CCNNGG 2 cut(s) 114, 226
BseGI GGATG 3 cut(s) 200, 390, 730
BseLI CCNNNNNNNGG 4 cut(s) 215, 232, 374, 409
BseMI GCAATG 1 cut(s) 480
BseMII CTCAG 1 cut(s) 45
BseRI GAGGAG 2 cut(s) 553, 720
BseXI GCAGC 7 cut(s) 25, 109, 131, 365, 635, 638, 688
Bsh1236I CGCG 1 cut(s) 245
BshFI GGCC 3 cut(s) 21, 416, 479
BsiSI CCGG 7 cut(s) 43, 57, 102, 302, 585, 797, 814
BslFI GGGAC 2 cut(s) 148, 154
BslI CCNNNNNNNGG 4 cut(s) 215, 232, 374, 409
BsmAI GTCTC 1 cut(s) 388
BsmBI CGTCTC 1 cut(s) 388
BsmFI GGGAC 2 cut(s) 148, 154
BsnI GGCC 3 cut(s) 21, 416, 479
Bsp119I TTCGAA 1 cut(s) 782
Bsp143I GATC 4 cut(s) 7, 333, 364, 764
Bsp19I CCATGG 1 cut(s) 114
BspANI GGCC 3 cut(s) 21, 416, 479
BspCNI CTCAG 1 cut(s) 44
BspFNI CGCG 1 cut(s) 245
BspHI TCATGA 1 cut(s) 316
BspLI GGNNCC 3 cut(s) 268, 589, 651
BspPI GGATC 2 cut(s) 359, 772
BspT104I TTCGAA 1 cut(s) 782
BsrBI CCGCTC 2 cut(s) 233, 738
BsrDI GCAATG 1 cut(s) 480
BssECI CCNNGG 2 cut(s) 114, 226
BssMI GATC 4 cut(s) 7, 333, 364, 764
BssNI GRCGYC 2 cut(s) 86, 642
BssT1I CCWWGG 2 cut(s) 114, 226
Bst4CI ACNGT 3 cut(s) 288, 311, 464
Bst6I CTCTTC 1 cut(s) 726
BstACI GRCGYC 2 cut(s) 86, 642
BstAPI GCANNNNNTGC 1 cut(s) 682
BstBI TTCGAA 1 cut(s) 782
BstC8I GCNNGC 2 cut(s) 163, 271
BstDEI CTNAG 3 cut(s) 31, 95, 661
BstDSI CCRYGG 1 cut(s) 114
BstF5I GGATG 3 cut(s) 200, 390, 730
BstFNI CGCG 1 cut(s) 245
BstKTI GATC 4 cut(s) 10, 336, 367, 767
BstMAI GTCTC 1 cut(s) 388
BstMBI GATC 4 cut(s) 7, 333, 364, 764
BstMWI GCNNNNNNNGC 4 cut(s) 242, 590, 623, 682
BstSFI CTRYAG 1 cut(s) 422
BstUI CGCG 1 cut(s) 245
BstV1I GCAGC 7 cut(s) 25, 109, 131, 365, 635, 638, 688
BsuI GTATCC 1 cut(s) 121
BsuRI GGCC 3 cut(s) 21, 416, 479
BtgI CCRYGG 1 cut(s) 114
BtsCI GGATG 3 cut(s) 200, 390, 730
Cac8I GCNNGC 2 cut(s) 163, 271
CciI TCATGA 1 cut(s) 316
CseI GACGC 1 cut(s) 370
CviAII CATG 6 cut(s) 115, 317, 595, 610, 646, 719
DdeI CTNAG 3 cut(s) 31, 95, 661
DpnI GATC 4 cut(s) 9, 335, 366, 766
DpnII GATC 4 cut(s) 7, 333, 364, 764
EaeI YGGCCR 1 cut(s) 477
Eam1104I CTCTTC 1 cut(s) 726
EarI CTCTTC 1 cut(s) 726
EciI GGCGGA 4 cut(s) 120, 443, 556, 815
Eco130I CCWWGG 2 cut(s) 114, 226
EcoT14I CCWWGG 2 cut(s) 114, 226
EcoT22I ATGCAT 1 cut(s) 200
ErhI CCWWGG 2 cut(s) 114, 226
Esp3I CGTCTC 1 cut(s) 388
FaeI CATG 6 cut(s) 118, 320, 598, 613, 649, 722
FaqI GGGAC 2 cut(s) 148, 154
FatI CATG 6 cut(s) 114, 316, 594, 609, 645, 718
FbaI TGATCA 1 cut(s) 7
FokI GGATG 3 cut(s) 207, 377, 737
FspBI CTAG 3 cut(s) 53, 237, 354
HaeIII GGCC 3 cut(s) 21, 416, 479
HapII CCGG 7 cut(s) 43, 57, 102, 302, 585, 797, 814
HgaI GACGC 1 cut(s) 370
Hin1I GRCGYC 2 cut(s) 86, 642
Hin1II CATG 6 cut(s) 118, 320, 598, 613, 649, 722
HinfI GANTC 2 cut(s) 35, 468
HpaII CCGG 7 cut(s) 43, 57, 102, 302, 585, 797, 814
HphI GGTGA 4 cut(s) 316, 497, 598, 803
Hpy166II GTNNAC 1 cut(s) 307
Hpy188I TCNGA 6 cut(s) 34, 84, 223, 266, 364, 654
Hpy188III TCNNGA 2 cut(s) 172, 317
Hpy8I GTNNAC 1 cut(s) 307
Hpy99I CGWCG 4 cut(s) 88, 133, 315, 772
HpyAV CCTTC 2 cut(s) 171, 778
HpyCH4III ACNGT 3 cut(s) 288, 311, 464
HpyCH4IV ACGT 4 cut(s) 86, 276, 483, 642
HpyCH4V TGCA 9 cut(s) 125, 165, 198, 292, 445, 490, 538, 623, 676
HpyF10VI GCNNNNNNNGC 4 cut(s) 242, 590, 623, 682
HpyF3I CTNAG 3 cut(s) 31, 95, 661
HpySE526I ACGT 4 cut(s) 86, 276, 483, 642
Hsp92I GRCGYC 2 cut(s) 86, 642
Hsp92II CATG 6 cut(s) 118, 320, 598, 613, 649, 722
Ksp22I TGATCA 1 cut(s) 7
Kzo9I GATC 4 cut(s) 7, 333, 364, 764
LmnI GCTCC 5 cut(s) 211, 230, 266, 587, 655
Lsp1109I GCAGC 7 cut(s) 25, 109, 131, 365, 635, 638, 688
LweI GCATC 5 cut(s) 185, 301, 310, 610, 700
MaeI CTAG 3 cut(s) 53, 237, 354
MaeII ACGT 4 cut(s) 86, 276, 483, 642
MaeIII GTNAC 1 cut(s) 328
MalI GATC 4 cut(s) 9, 335, 366, 766
MbiI CCGCTC 2 cut(s) 233, 738
MboI GATC 4 cut(s) 7, 333, 364, 764
MboII GAAGA 1 cut(s) 743
MlsI TGGCCA 1 cut(s) 479
MluCI AATT 1 cut(s) 524
MluNI TGGCCA 1 cut(s) 479
MlyI GAGTC 1 cut(s) 477
MmeI TCCRAC 5 cut(s) 107, 427, 579, 677, 742
Mox20I TGGCCA 1 cut(s) 479
Mph1103I ATGCAT 1 cut(s) 200
MroXI GAANNNNTTC 1 cut(s) 602
MscI TGGCCA 1 cut(s) 479
MslI CAYNNNNRTG 1 cut(s) 723
Msp20I TGGCCA 1 cut(s) 479
MspA1I CMGCKG 1 cut(s) 122
MspI CCGG 7 cut(s) 43, 57, 102, 302, 585, 797, 814
MvnI CGCG 1 cut(s) 245
MwoI GCNNNNNNNGC 4 cut(s) 242, 590, 623, 682
NcoI CCATGG 1 cut(s) 114
NdeII GATC 4 cut(s) 7, 333, 364, 764
NlaIII CATG 6 cut(s) 118, 320, 598, 613, 649, 722
NlaIV GGNNCC 3 cut(s) 268, 589, 651
NsiI ATGCAT 1 cut(s) 200
NspV TTCGAA 1 cut(s) 782
PagI TCATGA 1 cut(s) 316
PdmI GAANNNNTTC 1 cut(s) 602
PfeI GAWTC 1 cut(s) 35
PflMI CCANNNNNTGG 1 cut(s) 215
PleI GAGTC 1 cut(s) 476
PpsI GAGTC 1 cut(s) 476
Psp1406I AACGTT 1 cut(s) 483
PspN4I GGNNCC 3 cut(s) 268, 589, 651
PvuII CAGCTG 1 cut(s) 122
RseI CAYNNNNRTG 1 cut(s) 723
Sau3AI GATC 4 cut(s) 7, 333, 364, 764
SchI GAGTC 1 cut(s) 477
SfaNI GCATC 5 cut(s) 185, 301, 310, 610, 700
SfcI CTRYAG 1 cut(s) 422
SfuI TTCGAA 1 cut(s) 782
SmiMI CAYNNNNRTG 1 cut(s) 723
SmlI CTYRAG 2 cut(s) 172, 348
SmoI CTYRAG 2 cut(s) 172, 348
Sse9I AATT 1 cut(s) 524
SspMI CTAG 3 cut(s) 53, 237, 354
StyI CCWWGG 2 cut(s) 114, 226
TaaI ACNGT 3 cut(s) 288, 311, 464
TaiI ACGT 4 cut(s) 89, 279, 486, 645
TaqI TCGA 3 cut(s) 281, 767, 782
TasI AATT 1 cut(s) 524
TauI GCSGC 3 cut(s) 236, 248, 593
TfiI GAWTC 1 cut(s) 35
TseI GCWGC 7 cut(s) 13, 119, 122, 378, 623, 626, 676
TspDTI ATGAA 2 cut(s) 242, 611
Van91I CCANNNNNTGG 1 cut(s) 215
XmnI GAANNNNTTC 1 cut(s) 602
XspI CTAG 3 cut(s) 53, 237, 354
ZraI GACGTC 2 cut(s) 87, 643
Zsp2I ATGCAT 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.