Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0015242

Physical Location & Seq

Genomic Coordinates Reverse (-)

44822801 .. 44823620

Gene Structure 820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG361000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGCTGATCAGCCACAACCACAAGGGAATCATCGTGGCACTTCTGAAAGCCGCCGTCGAAAGGCCACATCCGCCGCCACTGGAAAGCAGCAGCAGCGAACAGCGGTAGATCATCATCTTCATCATCATCAATCCAGTAGTACTGCAGCTTCAGCTCCGTGTGGGGCATGCAAGTTTTTGAGAAGGAAGTGCATTAGTGGTTGCATCTTTGCTCCCCATTTTGGATCAGATCAGGGAGCCGCGAGGTTTGCTGCGGTGCACAAGGTGTTTGGCGCAAGTAATGTCTCAAAGCTTTTGCTGCACATACCTTTGAACCGCAGGAATGATGCTGTCGTTACAATATCCTACGAGGCTCAAGCTCGCCTCTCCGACCCGGTTTATGGTTGTGTATCCACCATTCTTGCTTTACAACAACAGGTTGCATCTTTACAAACCGAGCTCGCAATGGTGCAAACTCAGCTGATAAACAGTAGATTTGCGTTTGCAAATGCCATTCAAAGCTCGCAGCAGCATCAGGAACAACAGCAAAACATGGCATTGCTGCAGCCTGCCTACTCCAACAACTCATCTGCTTCGACTAACCCGATCAACATGAGGAGCTTCACCTCCAATTTTAATCATGATCTCGCGGCTGAGACAGCACCATGTTCCCACAGCTTGGAGCCTCTTCTGCTCTCAAGGCCTTCTCAAGATGAAGAAGAAGATGAGCAACAAAGTCAAGTGCCCCACCATTTTCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002831 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0023052 GO:0031347 GO:0032101 GO:0032870 GO:0042221 GO:0043900 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080134 GO:1900150 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

246

Amino Acids

27.0

Weight (kDa)

8.6

Isoelectric Point (pI)

62.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOB	PF03195	53 - 151	8.8e-35	Lateral organ boundaries (LOB) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0015242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03760
malus_domestica	MD11G1229500.v1.1 MD12G1009400.v1.1 MD14G1006900.v1.1
prunus_persica	Prupe.7G011300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0496241
rosa_laevigata	RLG00000022544
rosa_multiflora	Rmu_sc0004080.1_g000014 Rmu_ssc0000454.1_g000007
rosa_roxburghii	Rroxscaffold_6G00389310
rosa_rugosa	Rorug03G0281000
rosa_samantha	Rh3AG327900 Rh3BG364100 Rh3CG361000 Rh3DG364000
rosa_wichuraiana	Rw3G028720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	658
AccII	CGCG	2 cut(s)	242, 629
AciI	CCGC	8 cut(s)	52, 72, 75, 104, 240, 254, 316, 629
AclWI	GGATC	1 cut(s)	232
AcuI	CTGAAG	1 cut(s)	135
AdeI	CACNNNGTG	1 cut(s)	265
AfaI	GTAC	1 cut(s)	142
AfiI	CCNNNNNNNGG	4 cut(s)	61, 221, 380, 658
AgsI	TTSAA	2 cut(s)	313, 497
AluBI	AGCT	9 cut(s)	149, 155, 292, 359, 439, 460, 501, 600, 657
AluI	AGCT	9 cut(s)	149, 155, 292, 359, 439, 460, 501, 600, 657
Alw21I	GWGCWC	2 cut(s)	261, 441
Alw26I	GTCTC	2 cut(s)	289, 629
Alw44I	GTGCAC	1 cut(s)	257
AlwI	GGATC	1 cut(s)	232
AoxI	GGCC	2 cut(s)	63, 680
ApaLI	GTGCAC	1 cut(s)	257
AspLEI	GCGC	1 cut(s)	275
AsuC2I	CCSGG	1 cut(s)	374
AsuHPI	GGTGA	1 cut(s)	595
BaeGI	GKGCMC	2 cut(s)	261, 726
BanII	GRGCYC	1 cut(s)	441
BarI	GAAGNNNNNNTAC	2 cut(s)	133, 165
Bbv12I	GWGCWC	2 cut(s)	261, 441
BceAI	ACGGC	1 cut(s)	39
BciVI	GTATCC	1 cut(s)	400
BclI	TGATCA	1 cut(s)	7
BcnI	CCSGG	1 cut(s)	374
BcoDI	GTCTC	2 cut(s)	289, 629
BfaI	CTAG	1 cut(s)	739
BfmI	CTRYAG	2 cut(s)	144, 542
BfuI	GTATCC	1 cut(s)	400
BmcAI	AGTACT	1 cut(s)	142
Bme1390I	CCNGG	1 cut(s)	374
BmiI	GGNNCC	2 cut(s)	238, 663
BmrFI	CCNGG	1 cut(s)	374
BmsI	GCATC	4 cut(s)	213, 316, 431, 520
BpuEI	CTTGAG	3 cut(s)	339, 661, 672
BpuMI	CCSGG	1 cut(s)	374
BsaBI	GATNNNNATC	1 cut(s)	114
Bsc4I	CCNNNNNNNGG	4 cut(s)	61, 221, 380, 658
Bse1I	ACTGG	2 cut(s)	85, 135
Bse3DI	GCAATG	2 cut(s)	450, 536
Bse8I	GATNNNNATC	1 cut(s)	114
BseGI	GGATG	1 cut(s)	68
BseJI	GATNNNNATC	1 cut(s)	114
BseLI	CCNNNNNNNGG	4 cut(s)	61, 221, 380, 658
BseMI	GCAATG	2 cut(s)	450, 536
BseMII	CTCAG	2 cut(s)	470, 624
BseNI	ACTGG	2 cut(s)	85, 135
BseRI	GAGGAG	1 cut(s)	610
BseSI	GKGCMC	2 cut(s)	261, 726
BsgI	GTGCAG	1 cut(s)	284
Bsh1236I	CGCG	2 cut(s)	242, 629
BshFI	GGCC	2 cut(s)	65, 682
BsiHKAI	GWGCWC	2 cut(s)	261, 441
BsiSI	CCGG	1 cut(s)	374
BslI	CCNNNNNNNGG	4 cut(s)	61, 221, 380, 658
BsmAI	GTCTC	2 cut(s)	289, 629
BsnI	GGCC	2 cut(s)	65, 682
Bsp1286I	GDGCHC	3 cut(s)	261, 441, 726
Bsp143I	GATC	6 cut(s)	7, 109, 224, 229, 585, 622
BspACI	CCGC	8 cut(s)	52, 72, 75, 104, 240, 254, 316, 629
BspANI	GGCC	2 cut(s)	65, 682
BspCNI	CTCAG	2 cut(s)	469, 625
BspFNI	CGCG	2 cut(s)	242, 629
BspHI	TCATGA	1 cut(s)	619
BspLI	GGNNCC	2 cut(s)	238, 663
BspMAI	CTGCAG	2 cut(s)	148, 546
BspPI	GGATC	1 cut(s)	232
BsrDI	GCAATG	2 cut(s)	450, 536
BsrI	ACTGG	2 cut(s)	85, 135
BssMI	GATC	6 cut(s)	7, 109, 224, 229, 585, 622
Bst4CI	ACNGT	1 cut(s)	470
Bst6I	CTCTTC	1 cut(s)	672
BstC8I	GCNNGC	5 cut(s)	169, 361, 441, 503, 549
BstDEI	CTNAG	2 cut(s)	456, 633
BstF5I	GGATG	1 cut(s)	68
BstFNI	CGCG	2 cut(s)	242, 629
BstHHI	GCGC	1 cut(s)	275
BstKTI	GATC	6 cut(s)	10, 112, 227, 232, 588, 625
BstMAI	GTCTC	2 cut(s)	289, 629
BstMBI	GATC	6 cut(s)	7, 109, 224, 229, 585, 622
BstMWI	GCNNNNNNNGC	9 cut(s)	71, 94, 152, 248, 298, 457, 638, 670, 679
BstNSI	RCATGY	1 cut(s)	171
BstSCI	CCNGG	1 cut(s)	372
BstSFI	CTRYAG	2 cut(s)	144, 542
BstSLI	GKGCMC	2 cut(s)	261, 726
BstUI	CGCG	2 cut(s)	242, 629
BsuI	GTATCC	1 cut(s)	400
BsuRI	GGCC	2 cut(s)	65, 682
BtsCI	GGATG	1 cut(s)	68
BtsIMutI	CAGTG	1 cut(s)	78
Cac8I	GCNNGC	5 cut(s)	169, 361, 441, 503, 549
CciI	TCATGA	1 cut(s)	619
CfoI	GCGC	1 cut(s)	275
Csp6I	GTAC	1 cut(s)	141
CspCI	CAANNNNNGTGG	2 cut(s)	382, 417
CviAII	CATG	5 cut(s)	168, 532, 592, 620, 645
CviQI	GTAC	1 cut(s)	141
DdeI	CTNAG	2 cut(s)	456, 633
DpnI	GATC	6 cut(s)	9, 111, 226, 231, 587, 624
DpnII	GATC	6 cut(s)	7, 109, 224, 229, 585, 622
DraIII	CACNNNGTG	1 cut(s)	265
Eam1104I	CTCTTC	1 cut(s)	672
EarI	CTCTTC	1 cut(s)	672
EciI	GGCGGA	1 cut(s)	61
Ecl136II	GAGCTC	1 cut(s)	439
Eco147I	AGGCCT	1 cut(s)	682
Eco24I	GRGCYC	1 cut(s)	441
Eco53kI	GAGCTC	1 cut(s)	439
Eco57I	CTGAAG	1 cut(s)	135
EcoICRI	GAGCTC	1 cut(s)	439
EcoT38I	GRGCYC	1 cut(s)	441
FaeI	CATG	5 cut(s)	171, 535, 595, 623, 648
FaiI	YATR	7 cut(s)	169, 305, 381, 533, 593, 621, 646
FatI	CATG	5 cut(s)	167, 531, 591, 619, 644
FbaI	TGATCA	1 cut(s)	7
FokI	GGATG	1 cut(s)	55
FriOI	GRGCYC	1 cut(s)	441
FspBI	CTAG	1 cut(s)	739
GlaI	GCGC	1 cut(s)	274
HaeIII	GGCC	2 cut(s)	65, 682
HapII	CCGG	1 cut(s)	374
HhaI	GCGC	1 cut(s)	275
Hin1II	CATG	5 cut(s)	171, 535, 595, 623, 648
Hin6I	GCGC	1 cut(s)	273
HinP1I	GCGC	1 cut(s)	273
HindIII	AAGCTT	1 cut(s)	290
HinfI	GANTC	1 cut(s)	28
HpaII	CCGG	1 cut(s)	374
HphI	GGTGA	1 cut(s)	595
Hpy166II	GTNNAC	1 cut(s)	259
Hpy188I	TCNGA	3 cut(s)	46, 229, 370
Hpy188III	TCNNGA	3 cut(s)	515, 620, 689
Hpy8I	GTNNAC	1 cut(s)	259
Hpy99I	CGWCG	1 cut(s)	60
HpyAV	CCTTC	2 cut(s)	177, 693
HpyCH4III	ACNGT	1 cut(s)	470
HpyF10VI	GCNNNNNNNGC	9 cut(s)	71, 94, 152, 248, 298, 457, 638, 670, 679
HpyF3I	CTNAG	2 cut(s)	456, 633
Hsp92II	CATG	5 cut(s)	171, 535, 595, 623, 648
HspAI	GCGC	1 cut(s)	273
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	6 cut(s)	7, 109, 224, 229, 585, 622
LmnI	GCTCC	5 cut(s)	160, 217, 236, 597, 661
LpnPI	CCDG	8 cut(s)	66, 148, 218, 304, 387, 401, 500, 561
LweI	GCATC	4 cut(s)	213, 316, 431, 520
MaeI	CTAG	1 cut(s)	739
MaeIII	GTNAC	1 cut(s)	334
MalI	GATC	6 cut(s)	9, 111, 226, 231, 587, 624
MboI	GATC	6 cut(s)	7, 109, 224, 229, 585, 622
MboII	GAAGA	5 cut(s)	110, 659, 707, 710, 713
MhlI	GDGCHC	3 cut(s)	261, 441, 726
MluCI	AATT	1 cut(s)	610
MmeI	TCCRAC	2 cut(s)	393, 582
MnlI	CCTC	6 cut(s)	237, 343, 374, 588, 616, 675
MseI	TTAA	1 cut(s)	615
MspA1I	CMGCKG	2 cut(s)	104, 460
MspI	CCGG	1 cut(s)	374
MspR9I	CCNGG	1 cut(s)	374
MvnI	CGCG	2 cut(s)	242, 629
MwoI	GCNNNNNNNGC	9 cut(s)	71, 94, 152, 248, 298, 457, 638, 670, 679
NciI	CCSGG	1 cut(s)	374
NdeII	GATC	6 cut(s)	7, 109, 224, 229, 585, 622
NlaIII	CATG	5 cut(s)	171, 535, 595, 623, 648
NlaIV	GGNNCC	2 cut(s)	238, 663
NspI	RCATGY	1 cut(s)	171
PaeI	GCATGC	1 cut(s)	171
PagI	TCATGA	1 cut(s)	619
PceI	AGGCCT	1 cut(s)	682
PcsI	WCGNNNNNNNCGW	1 cut(s)	581
PfeI	GAWTC	1 cut(s)	28
PflMI	CCANNNNNTGG	1 cut(s)	658
Psp124BI	GAGCTC	1 cut(s)	441
PspN4I	GGNNCC	2 cut(s)	238, 663
PstI	CTGCAG	2 cut(s)	148, 546
PvuII	CAGCTG	1 cut(s)	460
RsaI	GTAC	1 cut(s)	142
RsaNI	GTAC	1 cut(s)	141
SacI	GAGCTC	1 cut(s)	441
SaqAI	TTAA	1 cut(s)	615
Sau3AI	GATC	6 cut(s)	7, 109, 224, 229, 585, 622
ScaI	AGTACT	1 cut(s)	142
ScrFI	CCNGG	1 cut(s)	374
SduI	GDGCHC	3 cut(s)	261, 441, 726
SfaNI	GCATC	4 cut(s)	213, 316, 431, 520
SfcI	CTRYAG	2 cut(s)	144, 542
SmlI	CTYRAG	3 cut(s)	354, 676, 687
SmoI	CTYRAG	3 cut(s)	354, 676, 687
SphI	GCATGC	1 cut(s)	171
Sse9I	AATT	1 cut(s)	610
SseBI	AGGCCT	1 cut(s)	682
SsiI	CCGC	8 cut(s)	52, 72, 75, 104, 240, 254, 316, 629
SspMI	CTAG	1 cut(s)	739
SstI	GAGCTC	1 cut(s)	441
StuI	AGGCCT	1 cut(s)	682
StyD4I	CCNGG	1 cut(s)	372
TaaI	ACNGT	1 cut(s)	470
TaqI	TCGA	2 cut(s)	58, 575
TasI	AATT	1 cut(s)	610
TatI	WGTACW	1 cut(s)	140
TauI	GCSGC	4 cut(s)	54, 77, 242, 632
TfiI	GAWTC	1 cut(s)	28
Tru1I	TTAA	1 cut(s)	615
Tru9I	TTAA	1 cut(s)	615
TscAI	CASTG	1 cut(s)	85
TspDTI	ATGAA	2 cut(s)	110, 708
TspGWI	ACGGA	1 cut(s)	147
TspRI	CASTG	1 cut(s)	85
Van91I	CCANNNNNTGG	1 cut(s)	658
VneI	GTGCAC	1 cut(s)	257
XceI	RCATGY	1 cut(s)	171
XspI	CTAG	1 cut(s)	739
ZrmI	AGTACT	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.