Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0015242

Physical Location & Seq

Genomic Coordinates Forward (+)

33344823 .. 33345149

Gene Structure 327 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1229500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGAAGGCGGCAGTTAGAACGACAAAAATAACTGGTAATGTAGTAGGTTCAAGTAGTGGTGCAGCTCCATGTGGGACGTGTAAGTTTTTGAGGAGGAAGTACATAAGCGAGTGCATATTCACACCCTATTTCGGTTCAGTCCGAGGAGCTGCACGCTTTGTCGCGATGCACAAAGTATTTGGAACGAGTAATGTGCCGAAGCTTTTGTTGCACATTCCCTCGAACCGCTTGCATGACGCTGTCGTTACCATCACTTACGAGGCTCAAGCTAGGCTCTCCAACCCCGTTGCCGGTTGTGTCTCCACCATTCTTGCTTTGCAACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002831 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0023052 GO:0031347 GO:0032101 GO:0032870 GO:0042221 GO:0043900 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080134 GO:1900150 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

109

Amino Acids

11.57

Weight (kDa)

10.13

Isoelectric Point (pI)

39.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOB	PF03195	23 - 108	3.2e-25	Lateral organ boundaries (LOB) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03760
malus_domestica	MD11G1229500.v1.1 MD12G1009400.v1.1 MD14G1006900.v1.1
prunus_persica	Prupe.7G011300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0496241
rosa_laevigata	RLG00000022544
rosa_multiflora	Rmu_sc0004080.1_g000014 Rmu_ssc0000454.1_g000007
rosa_roxburghii	Rroxscaffold_6G00389310
rosa_rugosa	Rorug03G0281000
rosa_samantha	Rh3AG327900 Rh3BG364100 Rh3CG361000 Rh3DG364000
rosa_wichuraiana	Rw3G028720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	164
AciI	CCGC	2 cut(s)	8, 226
AfaI	GTAC	1 cut(s)	101
AfiI	CCNNNNNNNGG	2 cut(s)	131, 290
AflIII	ACRYGT	1 cut(s)	77
AgsI	TTSAA	1 cut(s)	51
AjiI	CACGTC	1 cut(s)	78
AluBI	AGCT	4 cut(s)	65, 149, 202, 269
AluI	AGCT	4 cut(s)	65, 149, 202, 269
Alw26I	GTCTC	1 cut(s)	304
ApeKI	GCWGC	2 cut(s)	62, 149
BbvI	GCAGC	2 cut(s)	74, 136
BccI	CCATC	1 cut(s)	257
BcgI	CGANNNNNNTGC	4 cut(s)	175, 209, 211, 245
BcoDI	GTCTC	1 cut(s)	304
BfaI	CTAG	1 cut(s)	270
BisI	GCNGC	3 cut(s)	9, 63, 150
BlsI	GCNGC	3 cut(s)	10, 64, 151
BmgBI	CACGTC	1 cut(s)	78
BmsI	GCATC	1 cut(s)	156
BpuEI	CTTGAG	1 cut(s)	249
BsaJI	CCNNGG	1 cut(s)	142
Bsc4I	CCNNNNNNNGG	2 cut(s)	131, 290
Bse118I	RCCGGY	1 cut(s)	290
Bse1I	ACTGG	1 cut(s)	37
BseDI	CCNNGG	1 cut(s)	142
BseLI	CCNNNNNNNGG	2 cut(s)	131, 290
BseNI	ACTGG	1 cut(s)	37
BseRI	GAGGAG	2 cut(s)	106, 159
BseXI	GCAGC	2 cut(s)	74, 136
BsgI	GTGCAG	2 cut(s)	81, 135
Bsh1236I	CGCG	1 cut(s)	164
BsiSI	CCGG	1 cut(s)	291
BslFI	GGGAC	1 cut(s)	88
BslI	CCNNNNNNNGG	2 cut(s)	131, 290
BsmAI	GTCTC	1 cut(s)	304
BsmFI	GGGAC	1 cut(s)	88
Bsp68I	TCGCGA	1 cut(s)	164
BspACI	CCGC	2 cut(s)	8, 226
BspFNI	CGCG	1 cut(s)	164
BsrFI	RCCGGY	1 cut(s)	290
BsrI	ACTGG	1 cut(s)	37
BssAI	RCCGGY	1 cut(s)	290
BssECI	CCNNGG	1 cut(s)	142
BstC8I	GCNNGC	2 cut(s)	154, 230
BstFNI	CGCG	1 cut(s)	164
BstMAI	GTCTC	1 cut(s)	304
BstMWI	GCNNNNNNNGC	1 cut(s)	208
BstUI	CGCG	1 cut(s)	164
BstV1I	GCAGC	2 cut(s)	74, 136
BtgZI	GCGATG	1 cut(s)	179
BtrI	CACGTC	1 cut(s)	78
BtuMI	TCGCGA	1 cut(s)	164
Cac8I	GCNNGC	2 cut(s)	154, 230
Cfr10I	RCCGGY	1 cut(s)	290
CseI	GACGC	1 cut(s)	245
Csp6I	GTAC	1 cut(s)	100
CspCI	CAANNNNNGTGG	2 cut(s)	292, 327
CviAII	CATG	2 cut(s)	69, 233
CviJI	RGCY	6 cut(s)	65, 149, 202, 263, 269, 274
CviKI_1	RGCY	6 cut(s)	65, 149, 202, 263, 269, 274
CviQI	GTAC	1 cut(s)	100
FaeI	CATG	2 cut(s)	72, 236
FaiI	YATR	4 cut(s)	70, 104, 116, 234
FaqI	GGGAC	1 cut(s)	88
FatI	CATG	2 cut(s)	68, 232
Fnu4HI	GCNGC	3 cut(s)	9, 63, 150
Fsp4HI	GCNGC	3 cut(s)	9, 63, 150
FspBI	CTAG	1 cut(s)	270
GluI	GCNGC	3 cut(s)	9, 63, 150
HapII	CCGG	1 cut(s)	291
HgaI	GACGC	1 cut(s)	245
Hin1II	CATG	2 cut(s)	72, 236
HindIII	AAGCTT	1 cut(s)	200
HpaII	CCGG	1 cut(s)	291
Hpy188I	TCNGA	1 cut(s)	143
Hpy188III	TCNNGA	1 cut(s)	163
HpyCH4IV	ACGT	1 cut(s)	77
HpyCH4V	TGCA	7 cut(s)	62, 114, 152, 169, 211, 232, 319
HpyF10VI	GCNNNNNNNGC	1 cut(s)	208
HpySE526I	ACGT	1 cut(s)	77
Hsp92II	CATG	2 cut(s)	72, 236
LmnI	GCTCC	2 cut(s)	70, 146
LpnPI	CCDG	2 cut(s)	18, 304
Lsp1109I	GCAGC	2 cut(s)	74, 136
LweI	GCATC	1 cut(s)	156
MaeI	CTAG	1 cut(s)	270
MaeII	ACGT	1 cut(s)	77
MaeIII	GTNAC	1 cut(s)	244
MmeI	TCCRAC	1 cut(s)	303
MnlI	CCTC	5 cut(s)	84, 87, 137, 229, 253
MspI	CCGG	1 cut(s)	291
MvnI	CGCG	1 cut(s)	164
MwoI	GCNNNNNNNGC	1 cut(s)	208
NlaIII	CATG	2 cut(s)	72, 236
NruI	TCGCGA	1 cut(s)	164
PflFI	GACNNNGTC	1 cut(s)	239
PkrI	GCNGC	3 cut(s)	10, 64, 151
PsyI	GACNNNGTC	1 cut(s)	239
RruI	TCGCGA	1 cut(s)	164
RsaI	GTAC	1 cut(s)	101
RsaNI	GTAC	1 cut(s)	100
SatI	GCNGC	3 cut(s)	9, 63, 150
SetI	ASST	6 cut(s)	49, 67, 80, 151, 204, 271
SfaNI	GCATC	1 cut(s)	156
SmlI	CTYRAG	1 cut(s)	264
SmoI	CTYRAG	1 cut(s)	264
SsiI	CCGC	2 cut(s)	8, 226
SspMI	CTAG	1 cut(s)	270
TaiI	ACGT	1 cut(s)	80
TaqI	TCGA	1 cut(s)	221
TatI	WGTACW	1 cut(s)	99
TauI	GCSGC	1 cut(s)	11
TseI	GCWGC	2 cut(s)	62, 149
TspDTI	ATGAA	1 cut(s)	17
Tth111I	GACNNNGTC	1 cut(s)	239
XspI	CTAG	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.