Rroxscaffold_6G00389310

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0015242
Physical Location & Seq
Forward (+)
2774512 .. 2775325
814 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00389310.1

Sequence Viewer

Length: 735 bp
ATGGCTGATCAGCCACAACCACAAGGGAATCATCGTGGCACTTCTGAAAGCTGCCGTCGAAAGGCCACATCTGGCAAGCAGCAGCAGCAAACAGAGGTAGATCATCATCTTCATCGTCATCAATCCAGTAGTACTGCAGCTTCAGCTCCGTGTGGGGCATGCAAGTTTTTGAGAAGGAAGTGCATTAGTGGTTGCATCTTTGCTCCCCATTTTGGATCAGACCAGGGAGCCGCGAGGTTTGCTGCGGTGCACAAGGTGTTTGGCGCAAGTAATGTCTCAAAGCTTTTGCTGCACATACCTTTGAACCGCAGGAATGATGCTGTCGTTACAATATCCTACGAGGCTCAAGCTCGCCTCTCCGACCCGGTTTATGGTTGTGTATCCACCATTCTTGCTTTACAACAACAGGTTGCATCTTTACAAACCGAGCTCGCAATGGTGCAAACTCAGCTGATAAACAGTAGATTTGCATTTGCAAATGCCATTCAAAGCTCGCAGCAGCAGCATCAGGAACAACAGCAAAACATGGCATTGCTGCAGCCTGCCTACTCCAACAACTCATCTGCTTCGACTAACCCGATCAACATGAGCAGCTTCACCTCCAATTTTAATCATGACCTCGCAGCTGAGACAGCACCATGTTCCCACAGCTTGGAGCCTCTTCTGCTCTCAAGGCCTTCTCAAGATGAAGAAGAAGATGAGCAACAAAGTCAAGTGCCTCACCATTTTCGCTAG

Protein Analysis

244

Amino Acids

26.82

Weight (kDa)

7.21

Isoelectric Point (pI)

66.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 50 - 148 8.8e-35 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015242)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03760
malus_domestica MD11G1229500.v1.1 MD12G1009400.v1.1 MD14G1006900.v1.1
prunus_persica Prupe.7G011300_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0496241
rosa_laevigata RLG00000022544
rosa_multiflora Rmu_sc0004080.1_g000014 Rmu_ssc0000454.1_g000007
rosa_roxburghii Rroxscaffold_6G00389310
rosa_rugosa Rorug03G0281000
rosa_samantha Rh3AG327900 Rh3BG364100 Rh3CG361000 Rh3DG364000
rosa_wichuraiana Rw3G028720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 652
AccII CGCG 1 cut(s) 233
AciI CCGC 3 cut(s) 231, 245, 307
AclWI GGATC 1 cut(s) 223
AcuI CTGAAG 1 cut(s) 126
AdeI CACNNNGTG 1 cut(s) 256
AfaI GTAC 1 cut(s) 133
AfiI CCNNNNNNNGG 4 cut(s) 61, 212, 371, 652
AgsI TTSAA 2 cut(s) 304, 488
AjnI CCWGG 1 cut(s) 222
Alw21I GWGCWC 2 cut(s) 252, 432
Alw26I GTCTC 2 cut(s) 280, 623
Alw44I GTGCAC 1 cut(s) 248
AlwI GGATC 1 cut(s) 223
AoxI GGCC 2 cut(s) 63, 674
ApaLI GTGCAC 1 cut(s) 248
AspLEI GCGC 1 cut(s) 266
AsuC2I CCSGG 1 cut(s) 365
AsuHPI GGTGA 2 cut(s) 589, 713
BaeGI GKGCMC 1 cut(s) 252
BanII GRGCYC 1 cut(s) 432
BarI GAAGNNNNNNTAC 2 cut(s) 124, 156
Bbv12I GWGCWC 2 cut(s) 252, 432
BceAI ACGGC 1 cut(s) 39
BciT130I CCWGG 1 cut(s) 224
BciVI GTATCC 1 cut(s) 391
BclI TGATCA 1 cut(s) 7
BcnI CCSGG 1 cut(s) 365
BcoDI GTCTC 2 cut(s) 280, 623
BfaI CTAG 1 cut(s) 733
BfmI CTRYAG 2 cut(s) 135, 536
BfuI GTATCC 1 cut(s) 391
BmcAI AGTACT 1 cut(s) 133
Bme1390I CCNGG 2 cut(s) 224, 365
BmiI GGNNCC 2 cut(s) 229, 657
BmrFI CCNGG 2 cut(s) 224, 365
BmsI GCATC 4 cut(s) 204, 307, 422, 514
BpuEI CTTGAG 3 cut(s) 330, 655, 666
BpuMI CCSGG 1 cut(s) 365
BsaBI GATNNNNATC 1 cut(s) 105
BsaJI CCNNGG 1 cut(s) 223
Bsc4I CCNNNNNNNGG 4 cut(s) 61, 212, 371, 652
Bse1I ACTGG 1 cut(s) 126
Bse3DI GCAATG 2 cut(s) 441, 530
Bse8I GATNNNNATC 1 cut(s) 105
BseBI CCWGG 1 cut(s) 224
BseDI CCNNGG 1 cut(s) 223
BseJI GATNNNNATC 1 cut(s) 105
BseLI CCNNNNNNNGG 4 cut(s) 61, 212, 371, 652
BseMI GCAATG 2 cut(s) 441, 530
BseMII CTCAG 2 cut(s) 461, 618
BseNI ACTGG 1 cut(s) 126
BseSI GKGCMC 1 cut(s) 252
BsgI GTGCAG 1 cut(s) 275
Bsh1236I CGCG 1 cut(s) 233
BshFI GGCC 2 cut(s) 65, 676
BsiHKAI GWGCWC 2 cut(s) 252, 432
BsiSI CCGG 1 cut(s) 365
BslI CCNNNNNNNGG 4 cut(s) 61, 212, 371, 652
BsmAI GTCTC 2 cut(s) 280, 623
BsnI GGCC 2 cut(s) 65, 676
Bsp1286I GDGCHC 2 cut(s) 252, 432
Bsp143I GATC 4 cut(s) 7, 100, 215, 579
BspACI CCGC 3 cut(s) 231, 245, 307
BspANI GGCC 2 cut(s) 65, 676
BspCNI CTCAG 2 cut(s) 460, 619
BspFNI CGCG 1 cut(s) 233
BspHI TCATGA 1 cut(s) 613
BspLI GGNNCC 2 cut(s) 229, 657
BspMAI CTGCAG 2 cut(s) 139, 540
BspPI GGATC 1 cut(s) 223
BsrDI GCAATG 2 cut(s) 441, 530
BsrI ACTGG 1 cut(s) 126
BssECI CCNNGG 1 cut(s) 223
BssMI GATC 4 cut(s) 7, 100, 215, 579
Bst2UI CCWGG 1 cut(s) 224
Bst4CI ACNGT 1 cut(s) 461
Bst6I CTCTTC 1 cut(s) 666
BstC8I GCNNGC 6 cut(s) 77, 160, 352, 432, 494, 543
BstDEI CTNAG 2 cut(s) 447, 627
BstFNI CGCG 1 cut(s) 233
BstHHI GCGC 1 cut(s) 266
BstKTI GATC 4 cut(s) 10, 103, 218, 582
BstMAI GTCTC 2 cut(s) 280, 623
BstMBI GATC 4 cut(s) 7, 100, 215, 579
BstMWI GCNNNNNNNGC 9 cut(s) 85, 143, 239, 289, 448, 502, 632, 664, 673
BstNI CCWGG 1 cut(s) 224
BstNSI RCATGY 1 cut(s) 162
BstSCI CCNGG 2 cut(s) 222, 363
BstSFI CTRYAG 2 cut(s) 135, 536
BstSLI GKGCMC 1 cut(s) 252
BstUI CGCG 1 cut(s) 233
BsuI GTATCC 1 cut(s) 391
BsuRI GGCC 2 cut(s) 65, 676
Cac8I GCNNGC 6 cut(s) 77, 160, 352, 432, 494, 543
CciI TCATGA 1 cut(s) 613
CfoI GCGC 1 cut(s) 266
Csp6I GTAC 1 cut(s) 132
CspCI CAANNNNNGTGG 2 cut(s) 373, 408
CviAII CATG 5 cut(s) 159, 526, 586, 614, 639
CviQI GTAC 1 cut(s) 132
DdeI CTNAG 2 cut(s) 447, 627
DpnI GATC 4 cut(s) 9, 102, 217, 581
DpnII GATC 4 cut(s) 7, 100, 215, 579
DraIII CACNNNGTG 1 cut(s) 256
Eam1104I CTCTTC 1 cut(s) 666
EarI CTCTTC 1 cut(s) 666
Ecl136II GAGCTC 1 cut(s) 430
Eco147I AGGCCT 1 cut(s) 676
Eco24I GRGCYC 1 cut(s) 432
Eco53kI GAGCTC 1 cut(s) 430
Eco57I CTGAAG 1 cut(s) 126
EcoICRI GAGCTC 1 cut(s) 430
EcoRII CCWGG 1 cut(s) 222
EcoT38I GRGCYC 1 cut(s) 432
FaeI CATG 5 cut(s) 162, 529, 589, 617, 642
FaiI YATR 7 cut(s) 160, 296, 372, 527, 587, 615, 640
FatI CATG 5 cut(s) 158, 525, 585, 613, 638
FbaI TGATCA 1 cut(s) 7
FriOI GRGCYC 1 cut(s) 432
FspBI CTAG 1 cut(s) 733
GlaI GCGC 1 cut(s) 265
HaeIII GGCC 2 cut(s) 65, 676
HapII CCGG 1 cut(s) 365
HhaI GCGC 1 cut(s) 266
Hin1II CATG 5 cut(s) 162, 529, 589, 617, 642
Hin6I GCGC 1 cut(s) 264
HinP1I GCGC 1 cut(s) 264
HindIII AAGCTT 1 cut(s) 281
HinfI GANTC 1 cut(s) 28
HpaII CCGG 1 cut(s) 365
HphI GGTGA 2 cut(s) 589, 713
Hpy166II GTNNAC 1 cut(s) 250
Hpy188I TCNGA 3 cut(s) 46, 220, 361
Hpy188III TCNNGA 3 cut(s) 509, 614, 683
Hpy8I GTNNAC 1 cut(s) 250
Hpy99I CGWCG 1 cut(s) 60
HpyAV CCTTC 2 cut(s) 168, 687
HpyCH4III ACNGT 1 cut(s) 461
HpyF10VI GCNNNNNNNGC 9 cut(s) 85, 143, 239, 289, 448, 502, 632, 664, 673
HpyF3I CTNAG 2 cut(s) 447, 627
Hsp92II CATG 5 cut(s) 162, 529, 589, 617, 642
HspAI GCGC 1 cut(s) 264
Ksp22I TGATCA 1 cut(s) 7
Kzo9I GATC 4 cut(s) 7, 100, 215, 579
LmnI GCTCC 4 cut(s) 151, 208, 227, 655
LpnPI CCDG 9 cut(s) 57, 139, 209, 236, 295, 378, 392, 494, 555
LweI GCATC 4 cut(s) 204, 307, 422, 514
MaeI CTAG 1 cut(s) 733
MaeIII GTNAC 1 cut(s) 325
MalI GATC 4 cut(s) 9, 102, 217, 581
MboI GATC 4 cut(s) 7, 100, 215, 579
MboII GAAGA 5 cut(s) 101, 653, 701, 704, 707
MhlI GDGCHC 2 cut(s) 252, 432
MluCI AATT 1 cut(s) 604
MmeI TCCRAC 2 cut(s) 384, 576
MnlI CCTC 8 cut(s) 88, 228, 334, 365, 610, 629, 669, 729
MseI TTAA 1 cut(s) 609
MspA1I CMGCKG 2 cut(s) 451, 626
MspI CCGG 1 cut(s) 365
MspR9I CCNGG 2 cut(s) 224, 365
MvaI CCWGG 1 cut(s) 224
MvnI CGCG 1 cut(s) 233
MwoI GCNNNNNNNGC 9 cut(s) 85, 143, 239, 289, 448, 502, 632, 664, 673
NciI CCSGG 1 cut(s) 365
NdeII GATC 4 cut(s) 7, 100, 215, 579
NlaIII CATG 5 cut(s) 162, 529, 589, 617, 642
NlaIV GGNNCC 2 cut(s) 229, 657
NspI RCATGY 1 cut(s) 162
PaeI GCATGC 1 cut(s) 162
PagI TCATGA 1 cut(s) 613
PceI AGGCCT 1 cut(s) 676
PcsI WCGNNNNNNNCGW 1 cut(s) 575
PfeI GAWTC 1 cut(s) 28
PflMI CCANNNNNTGG 1 cut(s) 652
Psp124BI GAGCTC 1 cut(s) 432
Psp6I CCWGG 1 cut(s) 222
PspGI CCWGG 1 cut(s) 222
PspN4I GGNNCC 2 cut(s) 229, 657
PstI CTGCAG 2 cut(s) 139, 540
PvuII CAGCTG 2 cut(s) 451, 626
RsaI GTAC 1 cut(s) 133
RsaNI GTAC 1 cut(s) 132
SacI GAGCTC 1 cut(s) 432
SaqAI TTAA 1 cut(s) 609
Sau3AI GATC 4 cut(s) 7, 100, 215, 579
ScaI AGTACT 1 cut(s) 133
ScrFI CCNGG 2 cut(s) 224, 365
SduI GDGCHC 2 cut(s) 252, 432
SfaNI GCATC 4 cut(s) 204, 307, 422, 514
SfcI CTRYAG 2 cut(s) 135, 536
SmlI CTYRAG 3 cut(s) 345, 670, 681
SmoI CTYRAG 3 cut(s) 345, 670, 681
SphI GCATGC 1 cut(s) 162
Sse9I AATT 1 cut(s) 604
SseBI AGGCCT 1 cut(s) 676
SsiI CCGC 3 cut(s) 231, 245, 307
SspMI CTAG 1 cut(s) 733
SstI GAGCTC 1 cut(s) 432
StuI AGGCCT 1 cut(s) 676
StyD4I CCNGG 2 cut(s) 222, 363
TaaI ACNGT 1 cut(s) 461
TaqI TCGA 2 cut(s) 58, 569
TasI AATT 1 cut(s) 604
TatI WGTACW 1 cut(s) 131
TauI GCSGC 1 cut(s) 233
TfiI GAWTC 1 cut(s) 28
Tru1I TTAA 1 cut(s) 609
Tru9I TTAA 1 cut(s) 609
TspDTI ATGAA 2 cut(s) 101, 702
TspGWI ACGGA 1 cut(s) 138
Van91I CCANNNNNTGG 1 cut(s) 652
VneI GTGCAC 1 cut(s) 248
XceI RCATGY 1 cut(s) 162
XspI CTAG 1 cut(s) 733
ZrmI AGTACT 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.