Rh3AG327900

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0015242
Physical Location & Seq
Reverse (-)
46630835 .. 46632233
1399 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG327900.1

Sequence Viewer

Length: 741 bp
ATGGCTGATCAGCCACAACCACAAGGGAATCATCGTGGCACTTCTGAAAGCTGCCGTCGAAAGGCCACATCTGCCGCCACTGGAAAGCAGCAGCAGCGAACAGCGGTAGATCGTCATCTTCATCATCATCAATCCAGTAGTACTGCAGCTTCAGCTCCGTGTGGGGCATGCAAGTTTTTGAGAAGGAAGTGCATTAGCGGTTGCATCTTTGCTCCCCATTTTGGATCAGACCAGGGAGCCGCGAGGTTTGCTGCGGTGCACAAGGTGTTTGGCGCAAGTAATGTCTCAAAGCTTTTGCTGCACATACCTTTGAACCGCAGGAATGATGCTGTCGTTGCAATATCCTACGAGGCTCAAGCTCGCCTCTCCGACCCGGTTTATGGTTGTGTATCCACCATTCTTGCTTTACAACAACAGGTTGCATCTTTACAAACCGAGCTCGCAATGGTGCAAACTCAGCTGATAAACAGTAGATTTGCATTTGCAAATGCCATTCAAAGCTCGCAGCAGCATCAGGAACAACAGCAAAACATGGCATTGCTGCAGCCTGCCTACTCCAACAACTCATCTGCTTCGACTAACCCAATCAACATGAGGAGCTTCACCTCCAATTTTAATCATGATCTCGCAGCTGAGACAGCACCATGTTCCCACAGCTTGGAGCCTCTTCTGCTCTCAAGGCCTTCTCAAGACGAAGAAGAAGATGAGCAACAAAGTCAAGTGCCCCACCATTTTCGCTAG

Protein Analysis

246

Amino Acids

26.94

Weight (kDa)

8.53

Isoelectric Point (pI)

61.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 53 - 151 2.1e-34 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015242)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03760
malus_domestica MD11G1229500.v1.1 MD12G1009400.v1.1 MD14G1006900.v1.1
prunus_persica Prupe.7G011300_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0496241
rosa_laevigata RLG00000022544
rosa_multiflora Rmu_sc0004080.1_g000014 Rmu_ssc0000454.1_g000007
rosa_roxburghii Rroxscaffold_6G00389310
rosa_rugosa Rorug03G0281000
rosa_samantha Rh3AG327900 Rh3BG364100 Rh3CG361000 Rh3DG364000
rosa_wichuraiana Rw3G028720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 658
AccII CGCG 1 cut(s) 242
AciI CCGC 6 cut(s) 75, 104, 198, 240, 254, 316
AclWI GGATC 1 cut(s) 232
AcuI CTGAAG 1 cut(s) 135
AdeI CACNNNGTG 1 cut(s) 265
AfaI GTAC 1 cut(s) 142
AfiI CCNNNNNNNGG 4 cut(s) 61, 221, 380, 658
AgsI TTSAA 2 cut(s) 313, 497
AjnI CCWGG 1 cut(s) 231
Alw21I GWGCWC 2 cut(s) 261, 441
Alw26I GTCTC 2 cut(s) 289, 629
Alw44I GTGCAC 1 cut(s) 257
AlwI GGATC 1 cut(s) 232
AoxI GGCC 2 cut(s) 63, 680
ApaLI GTGCAC 1 cut(s) 257
AspLEI GCGC 1 cut(s) 275
AsuC2I CCSGG 1 cut(s) 374
AsuHPI GGTGA 1 cut(s) 595
BaeGI GKGCMC 2 cut(s) 261, 726
BanII GRGCYC 1 cut(s) 441
BarI GAAGNNNNNNTAC 2 cut(s) 133, 165
Bbv12I GWGCWC 2 cut(s) 261, 441
BceAI ACGGC 1 cut(s) 39
BciT130I CCWGG 1 cut(s) 233
BciVI GTATCC 1 cut(s) 400
BclI TGATCA 1 cut(s) 7
BcnI CCSGG 1 cut(s) 374
BcoDI GTCTC 2 cut(s) 289, 629
BfaI CTAG 1 cut(s) 739
BfmI CTRYAG 2 cut(s) 144, 542
BfuI GTATCC 1 cut(s) 400
BmcAI AGTACT 1 cut(s) 142
Bme1390I CCNGG 2 cut(s) 233, 374
BmiI GGNNCC 2 cut(s) 238, 663
BmrFI CCNGG 2 cut(s) 233, 374
BmsI GCATC 4 cut(s) 213, 316, 431, 520
BpuEI CTTGAG 3 cut(s) 339, 661, 672
BpuMI CCSGG 1 cut(s) 374
BsaBI GATNNNNATC 1 cut(s) 114
BsaJI CCNNGG 1 cut(s) 232
Bsc4I CCNNNNNNNGG 4 cut(s) 61, 221, 380, 658
Bse1I ACTGG 2 cut(s) 85, 135
Bse3DI GCAATG 2 cut(s) 450, 536
Bse8I GATNNNNATC 1 cut(s) 114
BseBI CCWGG 1 cut(s) 233
BseDI CCNNGG 1 cut(s) 232
BseJI GATNNNNATC 1 cut(s) 114
BseLI CCNNNNNNNGG 4 cut(s) 61, 221, 380, 658
BseMI GCAATG 2 cut(s) 450, 536
BseMII CTCAG 2 cut(s) 470, 624
BseNI ACTGG 2 cut(s) 85, 135
BseRI GAGGAG 1 cut(s) 610
BseSI GKGCMC 2 cut(s) 261, 726
BsgI GTGCAG 1 cut(s) 284
Bsh1236I CGCG 1 cut(s) 242
BshFI GGCC 2 cut(s) 65, 682
BsiHKAI GWGCWC 2 cut(s) 261, 441
BsiSI CCGG 1 cut(s) 374
BslI CCNNNNNNNGG 4 cut(s) 61, 221, 380, 658
BsmAI GTCTC 2 cut(s) 289, 629
BsnI GGCC 2 cut(s) 65, 682
Bsp1286I GDGCHC 3 cut(s) 261, 441, 726
Bsp143I GATC 4 cut(s) 7, 109, 224, 622
BspACI CCGC 6 cut(s) 75, 104, 198, 240, 254, 316
BspANI GGCC 2 cut(s) 65, 682
BspCNI CTCAG 2 cut(s) 469, 625
BspFNI CGCG 1 cut(s) 242
BspHI TCATGA 1 cut(s) 619
BspLI GGNNCC 2 cut(s) 238, 663
BspMAI CTGCAG 2 cut(s) 148, 546
BspPI GGATC 1 cut(s) 232
BsrDI GCAATG 2 cut(s) 450, 536
BsrI ACTGG 2 cut(s) 85, 135
BssECI CCNNGG 1 cut(s) 232
BssMI GATC 4 cut(s) 7, 109, 224, 622
Bst2UI CCWGG 1 cut(s) 233
Bst4CI ACNGT 1 cut(s) 470
Bst6I CTCTTC 1 cut(s) 672
BstC8I GCNNGC 5 cut(s) 169, 361, 441, 503, 549
BstDEI CTNAG 2 cut(s) 456, 633
BstFNI CGCG 1 cut(s) 242
BstHHI GCGC 1 cut(s) 275
BstKTI GATC 4 cut(s) 10, 112, 227, 625
BstMAI GTCTC 2 cut(s) 289, 629
BstMBI GATC 4 cut(s) 7, 109, 224, 622
BstNI CCWGG 1 cut(s) 233
BstNSI RCATGY 1 cut(s) 171
BstSCI CCNGG 2 cut(s) 231, 372
BstSFI CTRYAG 2 cut(s) 144, 542
BstSLI GKGCMC 2 cut(s) 261, 726
BstUI CGCG 1 cut(s) 242
BsuI GTATCC 1 cut(s) 400
BsuRI GGCC 2 cut(s) 65, 682
BtsIMutI CAGTG 1 cut(s) 78
Cac8I GCNNGC 5 cut(s) 169, 361, 441, 503, 549
CciI TCATGA 1 cut(s) 619
CfoI GCGC 1 cut(s) 275
Csp6I GTAC 1 cut(s) 141
CspCI CAANNNNNGTGG 2 cut(s) 382, 417
CviAII CATG 5 cut(s) 168, 532, 592, 620, 645
CviQI GTAC 1 cut(s) 141
DdeI CTNAG 2 cut(s) 456, 633
DpnI GATC 4 cut(s) 9, 111, 226, 624
DpnII GATC 4 cut(s) 7, 109, 224, 622
DraIII CACNNNGTG 1 cut(s) 265
Eam1104I CTCTTC 1 cut(s) 672
EarI CTCTTC 1 cut(s) 672
Ecl136II GAGCTC 1 cut(s) 439
Eco147I AGGCCT 1 cut(s) 682
Eco24I GRGCYC 1 cut(s) 441
Eco53kI GAGCTC 1 cut(s) 439
Eco57I CTGAAG 1 cut(s) 135
EcoICRI GAGCTC 1 cut(s) 439
EcoRII CCWGG 1 cut(s) 231
EcoT38I GRGCYC 1 cut(s) 441
FaeI CATG 5 cut(s) 171, 535, 595, 623, 648
FaiI YATR 7 cut(s) 169, 305, 381, 533, 593, 621, 646
FatI CATG 5 cut(s) 167, 531, 591, 619, 644
FbaI TGATCA 1 cut(s) 7
FriOI GRGCYC 1 cut(s) 441
FspBI CTAG 1 cut(s) 739
GlaI GCGC 1 cut(s) 274
HaeIII GGCC 2 cut(s) 65, 682
HapII CCGG 1 cut(s) 374
HhaI GCGC 1 cut(s) 275
Hin1II CATG 5 cut(s) 171, 535, 595, 623, 648
Hin6I GCGC 1 cut(s) 273
HinP1I GCGC 1 cut(s) 273
HindIII AAGCTT 1 cut(s) 290
HinfI GANTC 1 cut(s) 28
HpaII CCGG 1 cut(s) 374
HphI GGTGA 1 cut(s) 595
Hpy166II GTNNAC 1 cut(s) 259
Hpy188I TCNGA 3 cut(s) 46, 229, 370
Hpy188III TCNNGA 3 cut(s) 515, 620, 689
Hpy8I GTNNAC 1 cut(s) 259
Hpy99I CGWCG 1 cut(s) 60
HpyAV CCTTC 2 cut(s) 177, 693
HpyCH4III ACNGT 1 cut(s) 470
HpyF3I CTNAG 2 cut(s) 456, 633
Hsp92II CATG 5 cut(s) 171, 535, 595, 623, 648
HspAI GCGC 1 cut(s) 273
Ksp22I TGATCA 1 cut(s) 7
Kzo9I GATC 4 cut(s) 7, 109, 224, 622
LmnI GCTCC 5 cut(s) 160, 217, 236, 597, 661
LpnPI CCDG 9 cut(s) 66, 148, 218, 245, 304, 387, 401, 500, 561
LweI GCATC 4 cut(s) 213, 316, 431, 520
MaeI CTAG 1 cut(s) 739
MalI GATC 4 cut(s) 9, 111, 226, 624
MboI GATC 4 cut(s) 7, 109, 224, 622
MboII GAAGA 5 cut(s) 110, 659, 707, 710, 713
MhlI GDGCHC 3 cut(s) 261, 441, 726
MluCI AATT 1 cut(s) 610
MmeI TCCRAC 2 cut(s) 393, 582
MnlI CCTC 6 cut(s) 237, 343, 374, 588, 616, 675
MseI TTAA 1 cut(s) 615
MspA1I CMGCKG 3 cut(s) 104, 460, 632
MspI CCGG 1 cut(s) 374
MspR9I CCNGG 2 cut(s) 233, 374
MvaI CCWGG 1 cut(s) 233
MvnI CGCG 1 cut(s) 242
NciI CCSGG 1 cut(s) 374
NdeII GATC 4 cut(s) 7, 109, 224, 622
NlaIII CATG 5 cut(s) 171, 535, 595, 623, 648
NlaIV GGNNCC 2 cut(s) 238, 663
NspI RCATGY 1 cut(s) 171
PaeI GCATGC 1 cut(s) 171
PagI TCATGA 1 cut(s) 619
PceI AGGCCT 1 cut(s) 682
PfeI GAWTC 1 cut(s) 28
PflMI CCANNNNNTGG 1 cut(s) 658
Psp124BI GAGCTC 1 cut(s) 441
Psp6I CCWGG 1 cut(s) 231
PspGI CCWGG 1 cut(s) 231
PspN4I GGNNCC 2 cut(s) 238, 663
PstI CTGCAG 2 cut(s) 148, 546
PvuII CAGCTG 2 cut(s) 460, 632
RsaI GTAC 1 cut(s) 142
RsaNI GTAC 1 cut(s) 141
SacI GAGCTC 1 cut(s) 441
SaqAI TTAA 1 cut(s) 615
Sau3AI GATC 4 cut(s) 7, 109, 224, 622
ScaI AGTACT 1 cut(s) 142
ScrFI CCNGG 2 cut(s) 233, 374
SduI GDGCHC 3 cut(s) 261, 441, 726
SfaNI GCATC 4 cut(s) 213, 316, 431, 520
SfcI CTRYAG 2 cut(s) 144, 542
SmlI CTYRAG 3 cut(s) 354, 676, 687
SmoI CTYRAG 3 cut(s) 354, 676, 687
SphI GCATGC 1 cut(s) 171
Sse9I AATT 1 cut(s) 610
SseBI AGGCCT 1 cut(s) 682
SsiI CCGC 6 cut(s) 75, 104, 198, 240, 254, 316
SspMI CTAG 1 cut(s) 739
SstI GAGCTC 1 cut(s) 441
StuI AGGCCT 1 cut(s) 682
StyD4I CCNGG 2 cut(s) 231, 372
TaaI ACNGT 1 cut(s) 470
TaqI TCGA 2 cut(s) 58, 575
TasI AATT 1 cut(s) 610
TatI WGTACW 1 cut(s) 140
TauI GCSGC 2 cut(s) 77, 242
TfiI GAWTC 1 cut(s) 28
Tru1I TTAA 1 cut(s) 615
Tru9I TTAA 1 cut(s) 615
TscAI CASTG 1 cut(s) 85
TspDTI ATGAA 1 cut(s) 110
TspGWI ACGGA 1 cut(s) 147
TspRI CASTG 1 cut(s) 85
Van91I CCANNNNNTGG 1 cut(s) 658
VneI GTGCAC 1 cut(s) 257
XceI RCATGY 1 cut(s) 171
XspI CTAG 1 cut(s) 739
ZrmI AGTACT 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.