RLG00000022544

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0015242
Physical Location & Seq
Forward (+)
3250464 .. 3251274
811 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022544

Sequence Viewer

Length: 729 bp
ATGGCTGATCAGCCACAACCACAAGGGAATCATCGTGGCACTTCTGAAAGCTGCCGTCGAAAGGCCACATCCGCCGCCACTGGAAAGCAGCAGCAGCGAACAGAGGTGGATCATCATCAATCCAGTAGTACTGCAGCTTCAGCTCCGTGTGGGGCATGCAAGTTTTTGAGAAGGAAGTGCATTAGTGGTTGCATCTTTGCTCCCCATTTTGGATCAGACCAGGGAGCCGCGAGGTTTGCTGCGGTGCACAAGGTGTTTGGCGCAAGCAATGTCTCAAAGCTTTTGCTGCACATACCTTTGAACCGCAGGAATGATGCTGTCGTTACAATATCCTACGAGGCTCAAGCTCGCCTCTCCGACCCGGTTTATGGTTGTGTATCCACCATTCTTGCTTTACAACAACAGGTTGCATCTTTACAAACCGAGCTCGCAATGGTGCAAACTCAGCTGATAAACAGTAGATTTGCATTTGCAAATGCCATTCAAAGCTCGCAGCAGCATCAGGAACAACAGCAAAACATGGCATTGCTGCAGCCTGCCTACTCCAACAACTCATCTGCTTCTACTAACCCGATCAACATGAGCAGCTTCACCTCCAATATTAATCATGACCTCGCAGCTGAGACAGCACCATGTTCCCACAGCTTGGAGCCTCTTCTGCTCTCAAGGCCTTCTCAAGATGAAGAAGAAGATGAGCAACAAAGTCAAGTGCCCCACCATTTTCGCTAG

Protein Analysis

243

Amino Acids

26.38

Weight (kDa)

7.16

Isoelectric Point (pI)

66.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 49 - 147 8.6e-35 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015242)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03760
malus_domestica MD11G1229500.v1.1 MD12G1009400.v1.1 MD14G1006900.v1.1
prunus_persica Prupe.7G011300_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0496241
rosa_laevigata RLG00000022544
rosa_multiflora Rmu_sc0004080.1_g000014 Rmu_ssc0000454.1_g000007
rosa_roxburghii Rroxscaffold_6G00389310
rosa_rugosa Rorug03G0281000
rosa_samantha Rh3AG327900 Rh3BG364100 Rh3CG361000 Rh3DG364000
rosa_wichuraiana Rw3G028720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 646
AccII CGCG 1 cut(s) 230
AciI CCGC 5 cut(s) 72, 75, 228, 242, 304
AclWI GGATC 2 cut(s) 117, 220
AcuI CTGAAG 1 cut(s) 123
AdeI CACNNNGTG 1 cut(s) 253
AfaI GTAC 1 cut(s) 130
AfiI CCNNNNNNNGG 4 cut(s) 61, 209, 368, 646
AgsI TTSAA 2 cut(s) 301, 485
AjnI CCWGG 1 cut(s) 219
Alw21I GWGCWC 2 cut(s) 249, 429
Alw26I GTCTC 2 cut(s) 277, 617
Alw44I GTGCAC 1 cut(s) 245
AlwI GGATC 2 cut(s) 117, 220
AoxI GGCC 2 cut(s) 63, 668
ApaLI GTGCAC 1 cut(s) 245
AseI ATTAAT 1 cut(s) 603
AspLEI GCGC 1 cut(s) 263
AsuC2I CCSGG 1 cut(s) 362
AsuHPI GGTGA 1 cut(s) 583
BaeGI GKGCMC 2 cut(s) 249, 714
BanII GRGCYC 1 cut(s) 429
BarI GAAGNNNNNNTAC 2 cut(s) 121, 153
Bbv12I GWGCWC 2 cut(s) 249, 429
BceAI ACGGC 1 cut(s) 39
BciT130I CCWGG 1 cut(s) 221
BciVI GTATCC 1 cut(s) 388
BclI TGATCA 1 cut(s) 7
BcnI CCSGG 1 cut(s) 362
BcoDI GTCTC 2 cut(s) 277, 617
BfaI CTAG 1 cut(s) 727
BfmI CTRYAG 2 cut(s) 132, 530
BfuI GTATCC 1 cut(s) 388
BmcAI AGTACT 1 cut(s) 130
Bme1390I CCNGG 2 cut(s) 221, 362
BmiI GGNNCC 2 cut(s) 226, 651
BmrFI CCNGG 2 cut(s) 221, 362
BmsI GCATC 4 cut(s) 201, 304, 419, 508
BpuEI CTTGAG 3 cut(s) 327, 649, 660
BpuMI CCSGG 1 cut(s) 362
BsaBI GATNNNNATC 1 cut(s) 114
BsaJI CCNNGG 1 cut(s) 220
Bsc4I CCNNNNNNNGG 4 cut(s) 61, 209, 368, 646
Bse1I ACTGG 2 cut(s) 85, 123
Bse3DI GCAATG 3 cut(s) 274, 438, 524
Bse8I GATNNNNATC 1 cut(s) 114
BseBI CCWGG 1 cut(s) 221
BseDI CCNNGG 1 cut(s) 220
BseGI GGATG 1 cut(s) 68
BseJI GATNNNNATC 1 cut(s) 114
BseLI CCNNNNNNNGG 4 cut(s) 61, 209, 368, 646
BseMI GCAATG 3 cut(s) 274, 438, 524
BseMII CTCAG 2 cut(s) 458, 612
BseNI ACTGG 2 cut(s) 85, 123
BseSI GKGCMC 2 cut(s) 249, 714
BsgI GTGCAG 1 cut(s) 272
Bsh1236I CGCG 1 cut(s) 230
BshFI GGCC 2 cut(s) 65, 670
BsiHKAI GWGCWC 2 cut(s) 249, 429
BsiSI CCGG 1 cut(s) 362
BslI CCNNNNNNNGG 4 cut(s) 61, 209, 368, 646
BsmAI GTCTC 2 cut(s) 277, 617
BsnI GGCC 2 cut(s) 65, 670
Bsp1286I GDGCHC 3 cut(s) 249, 429, 714
Bsp143I GATC 4 cut(s) 7, 109, 212, 573
BspACI CCGC 5 cut(s) 72, 75, 228, 242, 304
BspANI GGCC 2 cut(s) 65, 670
BspCNI CTCAG 2 cut(s) 457, 613
BspFNI CGCG 1 cut(s) 230
BspHI TCATGA 1 cut(s) 607
BspLI GGNNCC 2 cut(s) 226, 651
BspMAI CTGCAG 2 cut(s) 136, 534
BspPI GGATC 2 cut(s) 117, 220
BsrDI GCAATG 3 cut(s) 274, 438, 524
BsrI ACTGG 2 cut(s) 85, 123
BssECI CCNNGG 1 cut(s) 220
BssMI GATC 4 cut(s) 7, 109, 212, 573
Bst2UI CCWGG 1 cut(s) 221
Bst4CI ACNGT 1 cut(s) 458
Bst6I CTCTTC 1 cut(s) 660
BstC8I GCNNGC 6 cut(s) 157, 265, 349, 429, 491, 537
BstDEI CTNAG 2 cut(s) 444, 621
BstF5I GGATG 1 cut(s) 68
BstFNI CGCG 1 cut(s) 230
BstHHI GCGC 1 cut(s) 263
BstKTI GATC 4 cut(s) 10, 112, 215, 576
BstMAI GTCTC 2 cut(s) 277, 617
BstMBI GATC 4 cut(s) 7, 109, 212, 573
BstMWI GCNNNNNNNGC 9 cut(s) 71, 94, 140, 236, 286, 445, 626, 658, 667
BstNI CCWGG 1 cut(s) 221
BstNSI RCATGY 1 cut(s) 159
BstSCI CCNGG 2 cut(s) 219, 360
BstSFI CTRYAG 2 cut(s) 132, 530
BstSLI GKGCMC 2 cut(s) 249, 714
BstUI CGCG 1 cut(s) 230
BsuI GTATCC 1 cut(s) 388
BsuRI GGCC 2 cut(s) 65, 670
BtsCI GGATG 1 cut(s) 68
BtsIMutI CAGTG 1 cut(s) 78
Cac8I GCNNGC 6 cut(s) 157, 265, 349, 429, 491, 537
CciI TCATGA 1 cut(s) 607
CfoI GCGC 1 cut(s) 263
Csp6I GTAC 1 cut(s) 129
CspCI CAANNNNNGTGG 2 cut(s) 370, 405
CviAII CATG 5 cut(s) 156, 520, 580, 608, 633
CviQI GTAC 1 cut(s) 129
DdeI CTNAG 2 cut(s) 444, 621
DpnI GATC 4 cut(s) 9, 111, 214, 575
DpnII GATC 4 cut(s) 7, 109, 212, 573
DraIII CACNNNGTG 1 cut(s) 253
Eam1104I CTCTTC 1 cut(s) 660
EarI CTCTTC 1 cut(s) 660
EciI GGCGGA 1 cut(s) 61
Ecl136II GAGCTC 1 cut(s) 427
Eco147I AGGCCT 1 cut(s) 670
Eco24I GRGCYC 1 cut(s) 429
Eco53kI GAGCTC 1 cut(s) 427
Eco57I CTGAAG 1 cut(s) 123
EcoICRI GAGCTC 1 cut(s) 427
EcoRII CCWGG 1 cut(s) 219
EcoT38I GRGCYC 1 cut(s) 429
FaeI CATG 5 cut(s) 159, 523, 583, 611, 636
FaiI YATR 7 cut(s) 157, 293, 369, 521, 581, 609, 634
FatI CATG 5 cut(s) 155, 519, 579, 607, 632
FbaI TGATCA 1 cut(s) 7
FokI GGATG 1 cut(s) 55
FriOI GRGCYC 1 cut(s) 429
FspBI CTAG 1 cut(s) 727
GlaI GCGC 1 cut(s) 262
HaeIII GGCC 2 cut(s) 65, 670
HapII CCGG 1 cut(s) 362
HhaI GCGC 1 cut(s) 263
Hin1II CATG 5 cut(s) 159, 523, 583, 611, 636
Hin6I GCGC 1 cut(s) 261
HinP1I GCGC 1 cut(s) 261
HindIII AAGCTT 1 cut(s) 278
HinfI GANTC 1 cut(s) 28
HpaII CCGG 1 cut(s) 362
HphI GGTGA 1 cut(s) 583
Hpy166II GTNNAC 1 cut(s) 247
Hpy188I TCNGA 3 cut(s) 46, 217, 358
Hpy188III TCNNGA 3 cut(s) 503, 608, 677
Hpy8I GTNNAC 1 cut(s) 247
Hpy99I CGWCG 1 cut(s) 60
HpyAV CCTTC 2 cut(s) 165, 681
HpyCH4III ACNGT 1 cut(s) 458
HpyF10VI GCNNNNNNNGC 9 cut(s) 71, 94, 140, 236, 286, 445, 626, 658, 667
HpyF3I CTNAG 2 cut(s) 444, 621
Hsp92II CATG 5 cut(s) 159, 523, 583, 611, 636
HspAI GCGC 1 cut(s) 261
Ksp22I TGATCA 1 cut(s) 7
Kzo9I GATC 4 cut(s) 7, 109, 212, 573
LmnI GCTCC 4 cut(s) 148, 205, 224, 649
LpnPI CCDG 9 cut(s) 66, 136, 206, 233, 292, 375, 389, 488, 549
LweI GCATC 4 cut(s) 201, 304, 419, 508
MaeI CTAG 1 cut(s) 727
MaeIII GTNAC 1 cut(s) 322
MalI GATC 4 cut(s) 9, 111, 214, 575
MboI GATC 4 cut(s) 7, 109, 212, 573
MboII GAAGA 4 cut(s) 647, 695, 698, 701
MhlI GDGCHC 3 cut(s) 249, 429, 714
MmeI TCCRAC 2 cut(s) 381, 570
MnlI CCTC 7 cut(s) 97, 225, 331, 362, 604, 623, 663
MseI TTAA 1 cut(s) 603
MspA1I CMGCKG 2 cut(s) 448, 620
MspI CCGG 1 cut(s) 362
MspR9I CCNGG 2 cut(s) 221, 362
MvaI CCWGG 1 cut(s) 221
MvnI CGCG 1 cut(s) 230
MwoI GCNNNNNNNGC 9 cut(s) 71, 94, 140, 236, 286, 445, 626, 658, 667
NciI CCSGG 1 cut(s) 362
NdeII GATC 4 cut(s) 7, 109, 212, 573
NlaIII CATG 5 cut(s) 159, 523, 583, 611, 636
NlaIV GGNNCC 2 cut(s) 226, 651
NspI RCATGY 1 cut(s) 159
PaeI GCATGC 1 cut(s) 159
PagI TCATGA 1 cut(s) 607
PceI AGGCCT 1 cut(s) 670
PfeI GAWTC 1 cut(s) 28
PflMI CCANNNNNTGG 1 cut(s) 646
PshBI ATTAAT 1 cut(s) 603
Psp124BI GAGCTC 1 cut(s) 429
Psp6I CCWGG 1 cut(s) 219
PspGI CCWGG 1 cut(s) 219
PspN4I GGNNCC 2 cut(s) 226, 651
PstI CTGCAG 2 cut(s) 136, 534
PvuII CAGCTG 2 cut(s) 448, 620
RsaI GTAC 1 cut(s) 130
RsaNI GTAC 1 cut(s) 129
SacI GAGCTC 1 cut(s) 429
SaqAI TTAA 1 cut(s) 603
Sau3AI GATC 4 cut(s) 7, 109, 212, 573
ScaI AGTACT 1 cut(s) 130
ScrFI CCNGG 2 cut(s) 221, 362
SduI GDGCHC 3 cut(s) 249, 429, 714
SfaNI GCATC 4 cut(s) 201, 304, 419, 508
SfcI CTRYAG 2 cut(s) 132, 530
SmlI CTYRAG 3 cut(s) 342, 664, 675
SmoI CTYRAG 3 cut(s) 342, 664, 675
SphI GCATGC 1 cut(s) 159
SseBI AGGCCT 1 cut(s) 670
SsiI CCGC 5 cut(s) 72, 75, 228, 242, 304
SspI AATATT 1 cut(s) 601
SspMI CTAG 1 cut(s) 727
SstI GAGCTC 1 cut(s) 429
StuI AGGCCT 1 cut(s) 670
StyD4I CCNGG 2 cut(s) 219, 360
TaaI ACNGT 1 cut(s) 458
TaqI TCGA 1 cut(s) 58
TatI WGTACW 1 cut(s) 128
TauI GCSGC 2 cut(s) 77, 230
TfiI GAWTC 1 cut(s) 28
Tru1I TTAA 1 cut(s) 603
Tru9I TTAA 1 cut(s) 603
TscAI CASTG 1 cut(s) 85
TspDTI ATGAA 1 cut(s) 696
TspGWI ACGGA 1 cut(s) 135
TspRI CASTG 1 cut(s) 85
Van91I CCANNNNNTGG 1 cut(s) 646
VneI GTGCAC 1 cut(s) 245
VspI ATTAAT 1 cut(s) 603
XceI RCATGY 1 cut(s) 159
XspI CTAG 1 cut(s) 727
ZrmI AGTACT 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.