RchiOBHm_Chr3g0496241

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0015242
Physical Location & Seq
Reverse (-)
46963324 .. 46964580
1257 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45858

Sequence Viewer

Length: 741 bp
ATGGCTGATCAGCCACAACCACAAGGGAATCATCGTGGCACTTCTGAAAGCTGCCGTCGAAAGGCCACATCTGCCGCCACTGGAAAGCAGCAGCAGCGAACAGCGGTAGATCGTCATCTTCATCATCATCAATCCAGTAGTACTGCAGCTTCAGCTCCGTGTGGGGCATGCAAGTTTTTGAGAAGGAAGTGCATTAGCGGTTGCATCTTTGCTCCCCATTTTGGATCAGACCAGGGAGCCGCGAGGTTTGCTGCGGTGCACAAGGTGTTTGGCGCAAGTAATGTCTCAAAGCTTTTGCTGCACATACCTTTGAACCGCAGGAATGATGCTGTCGTTGCAATATCCTACGAGGCTCAAGCTCGCCTCTCCGACCCGGTTTATGGTTGTGTATCCACCATTCTTGCTTTACAACAACAGGTTGCATCTTTACAAACCGAGCTCGCAATGGTGCAAACTCAGCTGATAAACAGTAGATTTGCATTTGCAAATGCCATTCAAAGCTCGCAGCAGCATCAGGAACAACAGCAAAACATGGCATTGCTGCAGCCTGCCTACTCCAACAACTCATCTGCTTCGACTAACCCAATCAACATGAGGAGCTTCACCTCCAATTTTAATCATGATCTCGCAGCTGAGACAGCACCATGTTCCCACAGCTTGGAGCCTCTTCTGCTCTCAAGGCCTTCTCAAGACGAAGAAGAAGATGAGCAACAAAGTCAAGTGCCCCACCATTTTCGCTAG

Protein Analysis

246

Amino Acids

26.94

Weight (kDa)

8.53

Isoelectric Point (pI)

61.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 53 - 151 2.1e-34 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015242)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03760
malus_domestica MD11G1229500.v1.1 MD12G1009400.v1.1 MD14G1006900.v1.1
prunus_persica Prupe.7G011300_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0496241
rosa_laevigata RLG00000022544
rosa_multiflora Rmu_sc0004080.1_g000014 Rmu_ssc0000454.1_g000007
rosa_roxburghii Rroxscaffold_6G00389310
rosa_rugosa Rorug03G0281000
rosa_samantha Rh3AG327900 Rh3BG364100 Rh3CG361000 Rh3DG364000
rosa_wichuraiana Rw3G028720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 658
AccII CGCG 1 cut(s) 242
AciI CCGC 6 cut(s) 75, 104, 198, 240, 254, 316
AclWI GGATC 1 cut(s) 232
AcuI CTGAAG 1 cut(s) 135
AdeI CACNNNGTG 1 cut(s) 265
AfaI GTAC 1 cut(s) 142
AfiI CCNNNNNNNGG 4 cut(s) 61, 221, 380, 658
AgsI TTSAA 2 cut(s) 313, 497
AjnI CCWGG 1 cut(s) 231
Alw21I GWGCWC 2 cut(s) 261, 441
Alw26I GTCTC 2 cut(s) 289, 629
Alw44I GTGCAC 1 cut(s) 257
AlwI GGATC 1 cut(s) 232
AoxI GGCC 2 cut(s) 63, 680
ApaLI GTGCAC 1 cut(s) 257
AspLEI GCGC 1 cut(s) 275
AsuC2I CCSGG 1 cut(s) 374
AsuHPI GGTGA 1 cut(s) 595
BaeGI GKGCMC 2 cut(s) 261, 726
BanII GRGCYC 1 cut(s) 441
BarI GAAGNNNNNNTAC 2 cut(s) 133, 165
Bbv12I GWGCWC 2 cut(s) 261, 441
BceAI ACGGC 1 cut(s) 39
BciT130I CCWGG 1 cut(s) 233
BciVI GTATCC 1 cut(s) 400
BclI TGATCA 1 cut(s) 7
BcnI CCSGG 1 cut(s) 374
BcoDI GTCTC 2 cut(s) 289, 629
BfaI CTAG 1 cut(s) 739
BfmI CTRYAG 2 cut(s) 144, 542
BfuI GTATCC 1 cut(s) 400
BmcAI AGTACT 1 cut(s) 142
Bme1390I CCNGG 2 cut(s) 233, 374
BmiI GGNNCC 2 cut(s) 238, 663
BmrFI CCNGG 2 cut(s) 233, 374
BmsI GCATC 4 cut(s) 213, 316, 431, 520
BpuEI CTTGAG 3 cut(s) 339, 661, 672
BpuMI CCSGG 1 cut(s) 374
BsaBI GATNNNNATC 1 cut(s) 114
BsaJI CCNNGG 1 cut(s) 232
Bsc4I CCNNNNNNNGG 4 cut(s) 61, 221, 380, 658
Bse1I ACTGG 2 cut(s) 85, 135
Bse3DI GCAATG 2 cut(s) 450, 536
Bse8I GATNNNNATC 1 cut(s) 114
BseBI CCWGG 1 cut(s) 233
BseDI CCNNGG 1 cut(s) 232
BseJI GATNNNNATC 1 cut(s) 114
BseLI CCNNNNNNNGG 4 cut(s) 61, 221, 380, 658
BseMI GCAATG 2 cut(s) 450, 536
BseMII CTCAG 2 cut(s) 470, 624
BseNI ACTGG 2 cut(s) 85, 135
BseRI GAGGAG 1 cut(s) 610
BseSI GKGCMC 2 cut(s) 261, 726
BsgI GTGCAG 1 cut(s) 284
Bsh1236I CGCG 1 cut(s) 242
BshFI GGCC 2 cut(s) 65, 682
BsiHKAI GWGCWC 2 cut(s) 261, 441
BsiSI CCGG 1 cut(s) 374
BslI CCNNNNNNNGG 4 cut(s) 61, 221, 380, 658
BsmAI GTCTC 2 cut(s) 289, 629
BsnI GGCC 2 cut(s) 65, 682
Bsp1286I GDGCHC 3 cut(s) 261, 441, 726
Bsp143I GATC 4 cut(s) 7, 109, 224, 622
BspACI CCGC 6 cut(s) 75, 104, 198, 240, 254, 316
BspANI GGCC 2 cut(s) 65, 682
BspCNI CTCAG 2 cut(s) 469, 625
BspFNI CGCG 1 cut(s) 242
BspHI TCATGA 1 cut(s) 619
BspLI GGNNCC 2 cut(s) 238, 663
BspMAI CTGCAG 2 cut(s) 148, 546
BspPI GGATC 1 cut(s) 232
BsrDI GCAATG 2 cut(s) 450, 536
BsrI ACTGG 2 cut(s) 85, 135
BssECI CCNNGG 1 cut(s) 232
BssMI GATC 4 cut(s) 7, 109, 224, 622
Bst2UI CCWGG 1 cut(s) 233
Bst4CI ACNGT 1 cut(s) 470
Bst6I CTCTTC 1 cut(s) 672
BstC8I GCNNGC 5 cut(s) 169, 361, 441, 503, 549
BstDEI CTNAG 2 cut(s) 456, 633
BstFNI CGCG 1 cut(s) 242
BstHHI GCGC 1 cut(s) 275
BstKTI GATC 4 cut(s) 10, 112, 227, 625
BstMAI GTCTC 2 cut(s) 289, 629
BstMBI GATC 4 cut(s) 7, 109, 224, 622
BstNI CCWGG 1 cut(s) 233
BstNSI RCATGY 1 cut(s) 171
BstSCI CCNGG 2 cut(s) 231, 372
BstSFI CTRYAG 2 cut(s) 144, 542
BstSLI GKGCMC 2 cut(s) 261, 726
BstUI CGCG 1 cut(s) 242
BsuI GTATCC 1 cut(s) 400
BsuRI GGCC 2 cut(s) 65, 682
BtsIMutI CAGTG 1 cut(s) 78
Cac8I GCNNGC 5 cut(s) 169, 361, 441, 503, 549
CciI TCATGA 1 cut(s) 619
CfoI GCGC 1 cut(s) 275
Csp6I GTAC 1 cut(s) 141
CspCI CAANNNNNGTGG 2 cut(s) 382, 417
CviAII CATG 5 cut(s) 168, 532, 592, 620, 645
CviQI GTAC 1 cut(s) 141
DdeI CTNAG 2 cut(s) 456, 633
DpnI GATC 4 cut(s) 9, 111, 226, 624
DpnII GATC 4 cut(s) 7, 109, 224, 622
DraIII CACNNNGTG 1 cut(s) 265
Eam1104I CTCTTC 1 cut(s) 672
EarI CTCTTC 1 cut(s) 672
Ecl136II GAGCTC 1 cut(s) 439
Eco147I AGGCCT 1 cut(s) 682
Eco24I GRGCYC 1 cut(s) 441
Eco53kI GAGCTC 1 cut(s) 439
Eco57I CTGAAG 1 cut(s) 135
EcoICRI GAGCTC 1 cut(s) 439
EcoRII CCWGG 1 cut(s) 231
EcoT38I GRGCYC 1 cut(s) 441
FaeI CATG 5 cut(s) 171, 535, 595, 623, 648
FaiI YATR 7 cut(s) 169, 305, 381, 533, 593, 621, 646
FatI CATG 5 cut(s) 167, 531, 591, 619, 644
FbaI TGATCA 1 cut(s) 7
FriOI GRGCYC 1 cut(s) 441
FspBI CTAG 1 cut(s) 739
GlaI GCGC 1 cut(s) 274
HaeIII GGCC 2 cut(s) 65, 682
HapII CCGG 1 cut(s) 374
HhaI GCGC 1 cut(s) 275
Hin1II CATG 5 cut(s) 171, 535, 595, 623, 648
Hin6I GCGC 1 cut(s) 273
HinP1I GCGC 1 cut(s) 273
HindIII AAGCTT 1 cut(s) 290
HinfI GANTC 1 cut(s) 28
HpaII CCGG 1 cut(s) 374
HphI GGTGA 1 cut(s) 595
Hpy166II GTNNAC 1 cut(s) 259
Hpy188I TCNGA 3 cut(s) 46, 229, 370
Hpy188III TCNNGA 3 cut(s) 515, 620, 689
Hpy8I GTNNAC 1 cut(s) 259
Hpy99I CGWCG 1 cut(s) 60
HpyAV CCTTC 2 cut(s) 177, 693
HpyCH4III ACNGT 1 cut(s) 470
HpyF3I CTNAG 2 cut(s) 456, 633
Hsp92II CATG 5 cut(s) 171, 535, 595, 623, 648
HspAI GCGC 1 cut(s) 273
Ksp22I TGATCA 1 cut(s) 7
Kzo9I GATC 4 cut(s) 7, 109, 224, 622
LmnI GCTCC 5 cut(s) 160, 217, 236, 597, 661
LpnPI CCDG 9 cut(s) 66, 148, 218, 245, 304, 387, 401, 500, 561
LweI GCATC 4 cut(s) 213, 316, 431, 520
MaeI CTAG 1 cut(s) 739
MalI GATC 4 cut(s) 9, 111, 226, 624
MboI GATC 4 cut(s) 7, 109, 224, 622
MboII GAAGA 5 cut(s) 110, 659, 707, 710, 713
MhlI GDGCHC 3 cut(s) 261, 441, 726
MluCI AATT 1 cut(s) 610
MmeI TCCRAC 2 cut(s) 393, 582
MnlI CCTC 6 cut(s) 237, 343, 374, 588, 616, 675
MseI TTAA 1 cut(s) 615
MspA1I CMGCKG 3 cut(s) 104, 460, 632
MspI CCGG 1 cut(s) 374
MspR9I CCNGG 2 cut(s) 233, 374
MvaI CCWGG 1 cut(s) 233
MvnI CGCG 1 cut(s) 242
NciI CCSGG 1 cut(s) 374
NdeII GATC 4 cut(s) 7, 109, 224, 622
NlaIII CATG 5 cut(s) 171, 535, 595, 623, 648
NlaIV GGNNCC 2 cut(s) 238, 663
NspI RCATGY 1 cut(s) 171
PaeI GCATGC 1 cut(s) 171
PagI TCATGA 1 cut(s) 619
PceI AGGCCT 1 cut(s) 682
PfeI GAWTC 1 cut(s) 28
PflMI CCANNNNNTGG 1 cut(s) 658
Psp124BI GAGCTC 1 cut(s) 441
Psp6I CCWGG 1 cut(s) 231
PspGI CCWGG 1 cut(s) 231
PspN4I GGNNCC 2 cut(s) 238, 663
PstI CTGCAG 2 cut(s) 148, 546
PvuII CAGCTG 2 cut(s) 460, 632
RsaI GTAC 1 cut(s) 142
RsaNI GTAC 1 cut(s) 141
SacI GAGCTC 1 cut(s) 441
SaqAI TTAA 1 cut(s) 615
Sau3AI GATC 4 cut(s) 7, 109, 224, 622
ScaI AGTACT 1 cut(s) 142
ScrFI CCNGG 2 cut(s) 233, 374
SduI GDGCHC 3 cut(s) 261, 441, 726
SfaNI GCATC 4 cut(s) 213, 316, 431, 520
SfcI CTRYAG 2 cut(s) 144, 542
SmlI CTYRAG 3 cut(s) 354, 676, 687
SmoI CTYRAG 3 cut(s) 354, 676, 687
SphI GCATGC 1 cut(s) 171
Sse9I AATT 1 cut(s) 610
SseBI AGGCCT 1 cut(s) 682
SsiI CCGC 6 cut(s) 75, 104, 198, 240, 254, 316
SspMI CTAG 1 cut(s) 739
SstI GAGCTC 1 cut(s) 441
StuI AGGCCT 1 cut(s) 682
StyD4I CCNGG 2 cut(s) 231, 372
TaaI ACNGT 1 cut(s) 470
TaqI TCGA 2 cut(s) 58, 575
TasI AATT 1 cut(s) 610
TatI WGTACW 1 cut(s) 140
TauI GCSGC 2 cut(s) 77, 242
TfiI GAWTC 1 cut(s) 28
Tru1I TTAA 1 cut(s) 615
Tru9I TTAA 1 cut(s) 615
TscAI CASTG 1 cut(s) 85
TspDTI ATGAA 1 cut(s) 110
TspGWI ACGGA 1 cut(s) 147
TspRI CASTG 1 cut(s) 85
Van91I CCANNNNNTGG 1 cut(s) 658
VneI GTGCAC 1 cut(s) 257
XceI RCATGY 1 cut(s) 171
XspI CTAG 1 cut(s) 739
ZrmI AGTACT 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.