Rh3BG364100

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0015242
Physical Location & Seq
Reverse (-)
44723898 .. 44725176
1279 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG364100.1

Sequence Viewer

Length: 732 bp
ATGGCTGATCAGCCACAACCACAAGGGAATCATCGTGGCACTTCTGAAAGCTGCCGTCGAAAGGCCACATCCGCCGCCACTGGAAAGCGGCAGCAGCGAACAGCGGTAGATCATCATCATCAATCCAGTAGTACTGCAGCTTCAGCTCCGTGTGGGGCATGCAAGTTTTTGAGAAGGAAGTGCATTAGTGGTTGCATCTTTGCTCCCCATTTTGGATCAGACCAGGGAGCCGCGCGGTTTGCTGCGGTGCACAAGGTGTTTGGCGCAAGTAATGTCTCAAAGCTTTTGCTGCACATACCTTTGAACTGCAGGAATGATGCTGTCGTTACAATATCCTACGAGGCTCAAGCTCGCCTCTCCGACCCCGTTTATGGTTGTGTATCCACCATTCTTGCTTTACAACAACAGGTTGCATCTTTACAAACCGAGCTCGCAATGGTGCAAACTCAGCTGATAAACAGTAGATTTGCATTTGCAAATGCCATTCAAAGCTCGCAGCAGCATCAGGAACAACAGCAAAACATGGCATTGCTGCAGCCTGCCTACTCCAACAACTCATCTGCTTCGACTAACCCGATCAACATGAGGAGCTTCACCTCCAATTTTAATCATGATCTCGCAGCTGAGACAGCACCATGTTCCCACAGCTTGGAGCCTCTTCTGCTCTCAAGGCCTTCTCAAGATGAAGAAGAAGATGAGCAACAAAGTCAAGTGCCCCACCATTTTCGCTAG

Protein Analysis

243

Amino Acids

26.54

Weight (kDa)

8.16

Isoelectric Point (pI)

59.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 50 - 148 2.6e-34 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015242)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03760
malus_domestica MD11G1229500.v1.1 MD12G1009400.v1.1 MD14G1006900.v1.1
prunus_persica Prupe.7G011300_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0496241
rosa_laevigata RLG00000022544
rosa_multiflora Rmu_sc0004080.1_g000014 Rmu_ssc0000454.1_g000007
rosa_roxburghii Rroxscaffold_6G00389310
rosa_rugosa Rorug03G0281000
rosa_samantha Rh3AG327900 Rh3BG364100 Rh3CG361000 Rh3DG364000
rosa_wichuraiana Rw3G028720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 649
AccII CGCG 2 cut(s) 233, 235
AciI CCGC 7 cut(s) 72, 75, 88, 104, 231, 235, 245
AclWI GGATC 1 cut(s) 223
AcuI CTGAAG 1 cut(s) 126
AdeI CACNNNGTG 1 cut(s) 256
AfaI GTAC 1 cut(s) 133
AfiI CCNNNNNNNGG 4 cut(s) 61, 212, 371, 649
AgsI TTSAA 2 cut(s) 304, 488
AjnI CCWGG 1 cut(s) 222
Alw21I GWGCWC 2 cut(s) 252, 432
Alw26I GTCTC 2 cut(s) 280, 620
Alw44I GTGCAC 1 cut(s) 248
AlwI GGATC 1 cut(s) 223
AoxI GGCC 2 cut(s) 63, 671
ApaLI GTGCAC 1 cut(s) 248
AspLEI GCGC 2 cut(s) 235, 266
AsuHPI GGTGA 1 cut(s) 586
BaeGI GKGCMC 2 cut(s) 252, 717
BanII GRGCYC 1 cut(s) 432
BarI GAAGNNNNNNTAC 2 cut(s) 124, 156
Bbv12I GWGCWC 2 cut(s) 252, 432
BceAI ACGGC 1 cut(s) 39
BciT130I CCWGG 1 cut(s) 224
BciVI GTATCC 1 cut(s) 391
BclI TGATCA 1 cut(s) 7
BcoDI GTCTC 2 cut(s) 280, 620
BfaI CTAG 1 cut(s) 730
BfmI CTRYAG 3 cut(s) 135, 307, 533
BfuI GTATCC 1 cut(s) 391
BmcAI AGTACT 1 cut(s) 133
Bme1390I CCNGG 1 cut(s) 224
BmiI GGNNCC 2 cut(s) 229, 654
BmrFI CCNGG 1 cut(s) 224
BmsI GCATC 4 cut(s) 204, 307, 422, 511
BpuEI CTTGAG 3 cut(s) 330, 652, 663
BsaBI GATNNNNATC 1 cut(s) 114
BsaJI CCNNGG 1 cut(s) 223
Bsc4I CCNNNNNNNGG 4 cut(s) 61, 212, 371, 649
Bse1I ACTGG 2 cut(s) 85, 126
Bse3DI GCAATG 2 cut(s) 441, 527
Bse8I GATNNNNATC 1 cut(s) 114
BseBI CCWGG 1 cut(s) 224
BseDI CCNNGG 1 cut(s) 223
BseGI GGATG 1 cut(s) 68
BseJI GATNNNNATC 1 cut(s) 114
BseLI CCNNNNNNNGG 4 cut(s) 61, 212, 371, 649
BseMI GCAATG 2 cut(s) 441, 527
BseMII CTCAG 2 cut(s) 461, 615
BseNI ACTGG 2 cut(s) 85, 126
BseRI GAGGAG 1 cut(s) 601
BseSI GKGCMC 2 cut(s) 252, 717
BsgI GTGCAG 1 cut(s) 275
Bsh1236I CGCG 2 cut(s) 233, 235
BshFI GGCC 2 cut(s) 65, 673
BsiHKAI GWGCWC 2 cut(s) 252, 432
BslI CCNNNNNNNGG 4 cut(s) 61, 212, 371, 649
BsmAI GTCTC 2 cut(s) 280, 620
BsnI GGCC 2 cut(s) 65, 673
Bsp1286I GDGCHC 3 cut(s) 252, 432, 717
Bsp143I GATC 5 cut(s) 7, 109, 215, 576, 613
BspACI CCGC 7 cut(s) 72, 75, 88, 104, 231, 235, 245
BspANI GGCC 2 cut(s) 65, 673
BspCNI CTCAG 2 cut(s) 460, 616
BspFNI CGCG 2 cut(s) 233, 235
BspHI TCATGA 1 cut(s) 610
BspLI GGNNCC 2 cut(s) 229, 654
BspMAI CTGCAG 3 cut(s) 139, 311, 537
BspPI GGATC 1 cut(s) 223
BsrDI GCAATG 2 cut(s) 441, 527
BsrI ACTGG 2 cut(s) 85, 126
BssECI CCNNGG 1 cut(s) 223
BssMI GATC 5 cut(s) 7, 109, 215, 576, 613
Bst2UI CCWGG 1 cut(s) 224
Bst4CI ACNGT 1 cut(s) 461
Bst6I CTCTTC 1 cut(s) 663
BstC8I GCNNGC 5 cut(s) 160, 352, 432, 494, 540
BstDEI CTNAG 2 cut(s) 447, 624
BstF5I GGATG 1 cut(s) 68
BstFNI CGCG 2 cut(s) 233, 235
BstHHI GCGC 2 cut(s) 235, 266
BstKTI GATC 5 cut(s) 10, 112, 218, 579, 616
BstMAI GTCTC 2 cut(s) 280, 620
BstMBI GATC 5 cut(s) 7, 109, 215, 576, 613
BstMWI GCNNNNNNNGC 9 cut(s) 71, 94, 143, 239, 289, 448, 629, 661, 670
BstNI CCWGG 1 cut(s) 224
BstNSI RCATGY 1 cut(s) 162
BstSCI CCNGG 1 cut(s) 222
BstSFI CTRYAG 3 cut(s) 135, 307, 533
BstSLI GKGCMC 2 cut(s) 252, 717
BstUI CGCG 2 cut(s) 233, 235
BsuI GTATCC 1 cut(s) 391
BsuRI GGCC 2 cut(s) 65, 673
BtsCI GGATG 1 cut(s) 68
BtsIMutI CAGTG 1 cut(s) 78
Cac8I GCNNGC 5 cut(s) 160, 352, 432, 494, 540
CciI TCATGA 1 cut(s) 610
CfoI GCGC 2 cut(s) 235, 266
Csp6I GTAC 1 cut(s) 132
CspCI CAANNNNNGTGG 2 cut(s) 373, 408
CviAII CATG 5 cut(s) 159, 523, 583, 611, 636
CviQI GTAC 1 cut(s) 132
DdeI CTNAG 2 cut(s) 447, 624
DpnI GATC 5 cut(s) 9, 111, 217, 578, 615
DpnII GATC 5 cut(s) 7, 109, 215, 576, 613
DraIII CACNNNGTG 1 cut(s) 256
Eam1104I CTCTTC 1 cut(s) 663
EarI CTCTTC 1 cut(s) 663
EciI GGCGGA 1 cut(s) 61
Ecl136II GAGCTC 1 cut(s) 430
Eco147I AGGCCT 1 cut(s) 673
Eco24I GRGCYC 1 cut(s) 432
Eco53kI GAGCTC 1 cut(s) 430
Eco57I CTGAAG 1 cut(s) 126
EcoICRI GAGCTC 1 cut(s) 430
EcoRII CCWGG 1 cut(s) 222
EcoT38I GRGCYC 1 cut(s) 432
FaeI CATG 5 cut(s) 162, 526, 586, 614, 639
FaiI YATR 7 cut(s) 160, 296, 372, 524, 584, 612, 637
FatI CATG 5 cut(s) 158, 522, 582, 610, 635
FbaI TGATCA 1 cut(s) 7
FokI GGATG 1 cut(s) 55
FriOI GRGCYC 1 cut(s) 432
FspBI CTAG 1 cut(s) 730
GlaI GCGC 2 cut(s) 234, 265
HaeIII GGCC 2 cut(s) 65, 673
HhaI GCGC 2 cut(s) 235, 266
Hin1II CATG 5 cut(s) 162, 526, 586, 614, 639
Hin6I GCGC 2 cut(s) 233, 264
HinP1I GCGC 2 cut(s) 233, 264
HindIII AAGCTT 1 cut(s) 281
HinfI GANTC 1 cut(s) 28
HphI GGTGA 1 cut(s) 586
Hpy166II GTNNAC 1 cut(s) 250
Hpy188I TCNGA 3 cut(s) 46, 220, 361
Hpy188III TCNNGA 3 cut(s) 506, 611, 680
Hpy8I GTNNAC 1 cut(s) 250
Hpy99I CGWCG 1 cut(s) 60
HpyAV CCTTC 2 cut(s) 168, 684
HpyCH4III ACNGT 1 cut(s) 461
HpyF10VI GCNNNNNNNGC 9 cut(s) 71, 94, 143, 239, 289, 448, 629, 661, 670
HpyF3I CTNAG 2 cut(s) 447, 624
Hsp92II CATG 5 cut(s) 162, 526, 586, 614, 639
HspAI GCGC 2 cut(s) 233, 264
Ksp22I TGATCA 1 cut(s) 7
Kzo9I GATC 5 cut(s) 7, 109, 215, 576, 613
LmnI GCTCC 5 cut(s) 151, 208, 227, 588, 652
LpnPI CCDG 8 cut(s) 66, 139, 209, 236, 295, 392, 491, 552
LweI GCATC 4 cut(s) 204, 307, 422, 511
MaeI CTAG 1 cut(s) 730
MaeIII GTNAC 1 cut(s) 325
MalI GATC 5 cut(s) 9, 111, 217, 578, 615
MboI GATC 5 cut(s) 7, 109, 215, 576, 613
MboII GAAGA 4 cut(s) 650, 698, 701, 704
MhlI GDGCHC 3 cut(s) 252, 432, 717
MluCI AATT 1 cut(s) 601
MmeI TCCRAC 2 cut(s) 384, 573
MnlI CCTC 5 cut(s) 334, 365, 579, 607, 666
MseI TTAA 1 cut(s) 606
MspA1I CMGCKG 3 cut(s) 104, 451, 623
MspR9I CCNGG 1 cut(s) 224
MvaI CCWGG 1 cut(s) 224
MvnI CGCG 2 cut(s) 233, 235
MwoI GCNNNNNNNGC 9 cut(s) 71, 94, 143, 239, 289, 448, 629, 661, 670
NdeII GATC 5 cut(s) 7, 109, 215, 576, 613
NlaIII CATG 5 cut(s) 162, 526, 586, 614, 639
NlaIV GGNNCC 2 cut(s) 229, 654
NspI RCATGY 1 cut(s) 162
PaeI GCATGC 1 cut(s) 162
PagI TCATGA 1 cut(s) 610
PceI AGGCCT 1 cut(s) 673
PcsI WCGNNNNNNNCGW 1 cut(s) 572
PfeI GAWTC 1 cut(s) 28
PflMI CCANNNNNTGG 1 cut(s) 649
Psp124BI GAGCTC 1 cut(s) 432
Psp6I CCWGG 1 cut(s) 222
PspGI CCWGG 1 cut(s) 222
PspN4I GGNNCC 2 cut(s) 229, 654
PstI CTGCAG 3 cut(s) 139, 311, 537
PvuII CAGCTG 2 cut(s) 451, 623
RsaI GTAC 1 cut(s) 133
RsaNI GTAC 1 cut(s) 132
SacI GAGCTC 1 cut(s) 432
SaqAI TTAA 1 cut(s) 606
Sau3AI GATC 5 cut(s) 7, 109, 215, 576, 613
ScaI AGTACT 1 cut(s) 133
ScrFI CCNGG 1 cut(s) 224
SduI GDGCHC 3 cut(s) 252, 432, 717
SfaNI GCATC 4 cut(s) 204, 307, 422, 511
SfcI CTRYAG 3 cut(s) 135, 307, 533
SmlI CTYRAG 3 cut(s) 345, 667, 678
SmoI CTYRAG 3 cut(s) 345, 667, 678
SphI GCATGC 1 cut(s) 162
Sse9I AATT 1 cut(s) 601
SseBI AGGCCT 1 cut(s) 673
SsiI CCGC 7 cut(s) 72, 75, 88, 104, 231, 235, 245
SspMI CTAG 1 cut(s) 730
SstI GAGCTC 1 cut(s) 432
StuI AGGCCT 1 cut(s) 673
StyD4I CCNGG 1 cut(s) 222
TaaI ACNGT 1 cut(s) 461
TaqI TCGA 2 cut(s) 58, 566
TasI AATT 1 cut(s) 601
TatI WGTACW 1 cut(s) 131
TauI GCSGC 3 cut(s) 77, 91, 233
TfiI GAWTC 1 cut(s) 28
Tru1I TTAA 1 cut(s) 606
Tru9I TTAA 1 cut(s) 606
TscAI CASTG 1 cut(s) 85
TspDTI ATGAA 1 cut(s) 699
TspGWI ACGGA 1 cut(s) 138
TspRI CASTG 1 cut(s) 85
Van91I CCANNNNNTGG 1 cut(s) 649
VneI GTGCAC 1 cut(s) 248
XceI RCATGY 1 cut(s) 162
XspI CTAG 1 cut(s) 730
ZrmI AGTACT 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.