Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015232

Physical Location & Seq

Genomic Coordinates Reverse (-)

1011310 .. 1012810

Gene Structure 1501 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G03930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGAGACCACCGATTAGCAGCGGAAGAATTGGTGATGGCGGACTTGATTCATGCCCTGAGAAGAAAGAGGAAGAGAAAGACTCAACAAGTAGACTTTGTTCGGATTTGAGTGATTTACGAATAGAAAGAATCGGAAGTACTCCTGCGTTCCAATGGATTTCAGTCTATACCAAACGTCCTCCTATGAAACAGAGATTTCACCACAACATTGCAAATTCAAGGTTGTCGCATCATGCAGAAAAAGGTAAAAGGGATGGCCTTTTCATAAGCTGTGTAGCATCAGAAGCTAATCTCTGGGCCTTAGTCATGGATGCTGGAACTGGTTTCACTTCTCAAGTTTATAAATTTTCTTCTACCTTCCTCCCCAAGGACTGGATTATGAAACAATGGGAGAAGAACTACTATATCAGTTCCATAGCTGGTGCAAATAATGGGAGCTCATTGGTCGTTATGTCAAAAGGAACTCGTTATATCCAGCAATCATACAAAACCGGTGACTCAATTCCATTAAAGTGGATGGATAAAAAGTGGAAAGAAGGTTTTCATGTAACATCCATGACCACGGGTGGGAGCCGTTGGGGTGTAGTAATGTCCAGGAACTCAGGCTTCTCTGAACAGGTGATGGAGGTTGACTTTTTGAACCCAAGTGAAGATATAAATCGAAGGTTGGAAAGTGGATACATGATAACATCAATGGCTGCAACAGCTGATCAAGCAGCTCTTATATTGAGTATACCTAGACGTAAAATAACCGATGAAATCCAAGAGACTTTACGCACTTCTTCCTTCCCTAGCTCCTATGTCAAGGACAAATGGGGGAAAAATATGTTCATAACATCAATATGTTATGGTCGGACAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007623 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010468 GO:0010604 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032501 GO:0032922 GO:0036211 GO:0042176 GO:0042752 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048511 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0065007 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

287

Amino Acids

32.39

Weight (kDa)

9.33

Isoelectric Point (pI)

52.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7477	PF24289	43 - 287	1.6e-128	Domain of unknown function (DUF7477)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0015232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03930
rosa_chinensis	RchiOBHm_Chr2g0164291 RchiOBHm_Chr7g0187401
rosa_laevigata	RLG00000004785 RLG00000021451
rosa_multiflora	Rmu_co8439351.1_g000001 Rmu_sc0007154.1_g000010
rosa_rugosa	Rorug02G0507900
rosa_samantha	Rh2AG575800 Rh2CG557500 Rh2DG596300 Rh7DG088000 Rh7DG088100
rosa_wichuraiana	Rw2G047690 Rw2G047770 Rw7G007560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	342
AccB7I	CCANNNNNTGG	1 cut(s)	372
AccI	GTMKAC	2 cut(s)	91, 733
AciI	CCGC	2 cut(s)	21, 39
AcsI	RAATTY	2 cut(s)	214, 344
AfaI	GTAC	1 cut(s)	139
AfiI	CCNNNNNNNGG	3 cut(s)	367, 372, 567
AgeI	ACCGGT	1 cut(s)	491
AgsI	TTSAA	2 cut(s)	219, 640
AjnI	CCWGG	1 cut(s)	593
AluBI	AGCT	7 cut(s)	270, 287, 419, 438, 707, 719, 795
AluI	AGCT	7 cut(s)	270, 287, 419, 438, 707, 719, 795
Alw21I	GWGCWC	1 cut(s)	440
Alw26I	GTCTC	1 cut(s)	761
AoxI	GGCC	2 cut(s)	256, 297
ApeKI	GCWGC	3 cut(s)	18, 698, 716
ApoI	RAATTY	2 cut(s)	214, 344
AsiGI	ACCGGT	1 cut(s)	491
Asp700I	GAANNNNTTC	1 cut(s)	540
AspS9I	GGNCC	1 cut(s)	297
AsuHPI	GGTGA	4 cut(s)	44, 191, 506, 631
BanII	GRGCYC	1 cut(s)	440
Bbv12I	GWGCWC	1 cut(s)	440
BbvI	GCAGC	3 cut(s)	30, 685, 728
BccI	CCATC	4 cut(s)	29, 248, 511, 616
BceAI	ACGGC	1 cut(s)	558
BciT130I	CCWGG	1 cut(s)	595
BciVI	GTATCC	1 cut(s)	671
BclI	TGATCA	1 cut(s)	709
BcoDI	GTCTC	1 cut(s)	761
BfaI	CTAG	2 cut(s)	738, 792
BfuI	GTATCC	1 cut(s)	671
BisI	GCNGC	3 cut(s)	19, 699, 717
BlsI	GCNGC	3 cut(s)	20, 700, 718
BmcAI	AGTACT	1 cut(s)	139
Bme1390I	CCNGG	1 cut(s)	595
BmgT120I	GGNCC	1 cut(s)	297
BmiI	GGNNCC	1 cut(s)	572
BmrFI	CCNGG	1 cut(s)	595
BmsI	GCATC	3 cut(s)	238, 287, 301
BplI	GAGNNNNNCTC	2 cut(s)	65, 97
BpuEI	CTTGAG	1 cut(s)	318
BsaBI	GATNNNNATC	1 cut(s)	657
BsaJI	CCNNGG	2 cut(s)	366, 561
BsaWI	WCCGGW	1 cut(s)	491
Bsc4I	CCNNNNNNNGG	3 cut(s)	367, 372, 567
Bse118I	RCCGGY	1 cut(s)	491
Bse1I	ACTGG	2 cut(s)	325, 377
Bse3DI	GCAATG	1 cut(s)	207
Bse8I	GATNNNNATC	1 cut(s)	657
BseBI	CCWGG	1 cut(s)	595
BseDI	CCNNGG	2 cut(s)	366, 561
BseGI	GGATG	4 cut(s)	259, 316, 522, 551
BseJI	GATNNNNATC	1 cut(s)	657
BseLI	CCNNNNNNNGG	3 cut(s)	367, 372, 567
BseMI	GCAATG	1 cut(s)	207
BseMII	CTCAG	2 cut(s)	48, 615
BseNI	ACTGG	2 cut(s)	325, 377
BseXI	GCAGC	3 cut(s)	30, 685, 728
BshFI	GGCC	2 cut(s)	258, 299
BshTI	ACCGGT	1 cut(s)	491
BsiHKAI	GWGCWC	1 cut(s)	440
BsiSI	CCGG	1 cut(s)	492
BslI	CCNNNNNNNGG	3 cut(s)	367, 372, 567
BsmAI	GTCTC	1 cut(s)	761
BsnI	GGCC	2 cut(s)	258, 299
Bsp1286I	GDGCHC	1 cut(s)	440
Bsp143I	GATC	1 cut(s)	709
BspACI	CCGC	2 cut(s)	21, 39
BspANI	GGCC	2 cut(s)	258, 299
BspCNI	CTCAG	2 cut(s)	49, 614
BspLI	GGNNCC	1 cut(s)	572
BsrDI	GCAATG	1 cut(s)	207
BsrFI	RCCGGY	1 cut(s)	491
BsrI	ACTGG	2 cut(s)	325, 377
BssAI	RCCGGY	1 cut(s)	491
BssECI	CCNNGG	2 cut(s)	366, 561
BssMI	GATC	1 cut(s)	709
BssNAI	GTATAC	1 cut(s)	734
BssT1I	CCWWGG	1 cut(s)	366
Bst1107I	GTATAC	1 cut(s)	734
Bst2UI	CCWGG	1 cut(s)	595
Bst4CI	ACNGT	1 cut(s)	859
Bst6I	CTCTTC	1 cut(s)	66
BstDEI	CTNAG	3 cut(s)	57, 301, 601
BstDSI	CCRYGG	1 cut(s)	561
BstENI	CCTNNNNNAGG	1 cut(s)	365
BstF5I	GGATG	4 cut(s)	259, 316, 522, 551
BstKTI	GATC	1 cut(s)	712
BstMAI	GTCTC	1 cut(s)	761
BstMBI	GATC	1 cut(s)	709
BstMWI	GCNNNNNNNGC	3 cut(s)	284, 704, 713
BstNI	CCWGG	1 cut(s)	595
BstSCI	CCNGG	1 cut(s)	593
BstV1I	GCAGC	3 cut(s)	30, 685, 728
BstXI	CCANNNNNNTGG	1 cut(s)	513
BstZ17I	GTATAC	1 cut(s)	734
BsuI	GTATCC	1 cut(s)	671
BsuRI	GGCC	2 cut(s)	258, 299
BtgI	CCRYGG	1 cut(s)	561
BtsCI	GGATG	4 cut(s)	259, 316, 522, 551
Cfr10I	RCCGGY	1 cut(s)	491
Cfr13I	GGNCC	1 cut(s)	297
Csp6I	GTAC	1 cut(s)	138
CspAI	ACCGGT	1 cut(s)	491
CviAII	CATG	6 cut(s)	51, 233, 307, 545, 556, 682
CviQI	GTAC	1 cut(s)	138
DdeI	CTNAG	3 cut(s)	57, 301, 601
DpnI	GATC	1 cut(s)	711
DpnII	GATC	1 cut(s)	709
Eam1104I	CTCTTC	1 cut(s)	66
EarI	CTCTTC	1 cut(s)	66
EciI	GGCGGA	1 cut(s)	54
Ecl136II	GAGCTC	1 cut(s)	438
Eco130I	CCWWGG	1 cut(s)	366
Eco24I	GRGCYC	1 cut(s)	440
Eco53kI	GAGCTC	1 cut(s)	438
EcoICRI	GAGCTC	1 cut(s)	438
EcoNI	CCTNNNNNAGG	1 cut(s)	365
EcoRII	CCWGG	1 cut(s)	593
EcoT14I	CCWWGG	1 cut(s)	366
EcoT38I	GRGCYC	1 cut(s)	440
ErhI	CCWWGG	1 cut(s)	366
FaeI	CATG	6 cut(s)	54, 236, 310, 548, 559, 685
FalI	AAGNNNNNCTT	2 cut(s)	705, 737
FatI	CATG	6 cut(s)	50, 232, 306, 544, 555, 681
FbaI	TGATCA	1 cut(s)	709
FblI	GTMKAC	2 cut(s)	91, 733
Fnu4HI	GCNGC	3 cut(s)	19, 699, 717
FokI	GGATG	4 cut(s)	266, 323, 529, 538
FriOI	GRGCYC	1 cut(s)	440
Fsp4HI	GCNGC	3 cut(s)	19, 699, 717
FspBI	CTAG	2 cut(s)	738, 792
GluI	GCNGC	3 cut(s)	19, 699, 717
HaeIII	GGCC	2 cut(s)	258, 299
HapII	CCGG	1 cut(s)	492
Hin1II	CATG	6 cut(s)	54, 236, 310, 548, 559, 685
HincII	GTYRAC	1 cut(s)	631
HindII	GTYRAC	1 cut(s)	631
HinfI	GANTC	4 cut(s)	47, 80, 129, 497
HpaII	CCGG	1 cut(s)	492
HphI	GGTGA	4 cut(s)	44, 191, 506, 631
Hpy166II	GTNNAC	3 cut(s)	92, 631, 734
Hpy188I	TCNGA	5 cut(s)	103, 134, 283, 613, 855
Hpy8I	GTNNAC	3 cut(s)	92, 631, 734
HpyAV	CCTTC	4 cut(s)	367, 530, 657, 796
HpyCH4III	ACNGT	1 cut(s)	859
HpyCH4IV	ACGT	2 cut(s)	175, 742
HpyCH4V	TGCA	4 cut(s)	212, 236, 425, 701
HpyF10VI	GCNNNNNNNGC	3 cut(s)	284, 704, 713
HpyF3I	CTNAG	3 cut(s)	57, 301, 601
HpySE526I	ACGT	2 cut(s)	175, 742
Hsp92II	CATG	6 cut(s)	54, 236, 310, 548, 559, 685
Ksp22I	TGATCA	1 cut(s)	709
Kzo9I	GATC	1 cut(s)	709
LmnI	GCTCC	3 cut(s)	435, 570, 800
Lsp1109I	GCAGC	3 cut(s)	30, 685, 728
LweI	GCATC	3 cut(s)	238, 287, 301
MaeI	CTAG	2 cut(s)	738, 792
MaeII	ACGT	2 cut(s)	175, 742
MaeIII	GTNAC	2 cut(s)	494, 547
MalI	GATC	1 cut(s)	711
MboI	GATC	1 cut(s)	709
MboII	GAAGA	7 cut(s)	36, 73, 83, 342, 406, 662, 774
MhlI	GDGCHC	1 cut(s)	440
MluCI	AATT	4 cut(s)	27, 214, 344, 501
MlyI	GAGTC	2 cut(s)	74, 491
MmeI	TCCRAC	2 cut(s)	648, 833
MnlI	CCTC	4 cut(s)	61, 189, 371, 619
MroXI	GAANNNNTTC	1 cut(s)	540
MseI	TTAA	1 cut(s)	509
MslI	CAYNNNNRTG	2 cut(s)	511, 841
MspA1I	CMGCKG	2 cut(s)	21, 707
MspI	CCGG	1 cut(s)	492
MspR9I	CCNGG	1 cut(s)	595
MvaI	CCWGG	1 cut(s)	595
MwoI	GCNNNNNNNGC	3 cut(s)	284, 704, 713
NdeII	GATC	1 cut(s)	709
NlaIII	CATG	6 cut(s)	54, 236, 310, 548, 559, 685
NlaIV	GGNNCC	1 cut(s)	572
NmuCI	GTSAC	1 cut(s)	494
PdmI	GAANNNNTTC	1 cut(s)	540
PfeI	GAWTC	2 cut(s)	47, 129
PflMI	CCANNNNNTGG	1 cut(s)	372
PfoI	TCCNGGA	1 cut(s)	593
PinAI	ACCGGT	1 cut(s)	491
PkrI	GCNGC	3 cut(s)	20, 700, 718
PleI	GAGTC	2 cut(s)	74, 491
PpsI	GAGTC	2 cut(s)	74, 491
PsiI	TTATAA	1 cut(s)	342
Psp124BI	GAGCTC	1 cut(s)	440
Psp6I	CCWGG	1 cut(s)	593
PspGI	CCWGG	1 cut(s)	593
PspN4I	GGNNCC	1 cut(s)	572
PspPI	GGNCC	1 cut(s)	297
PsrI	GAACNNNNNNTAC	2 cut(s)	82, 114
PvuII	CAGCTG	1 cut(s)	707
RsaI	GTAC	1 cut(s)	139
RsaNI	GTAC	1 cut(s)	138
RseI	CAYNNNNRTG	2 cut(s)	511, 841
SacI	GAGCTC	1 cut(s)	440
SaqAI	TTAA	1 cut(s)	509
SatI	GCNGC	3 cut(s)	19, 699, 717
Sau3AI	GATC	1 cut(s)	709
Sau96I	GGNCC	1 cut(s)	297
ScaI	AGTACT	1 cut(s)	139
SchI	GAGTC	2 cut(s)	74, 491
ScrFI	CCNGG	1 cut(s)	595
SduI	GDGCHC	1 cut(s)	440
SfaNI	GCATC	3 cut(s)	238, 287, 301
SmiMI	CAYNNNNRTG	2 cut(s)	511, 841
SmlI	CTYRAG	1 cut(s)	333
SmoI	CTYRAG	1 cut(s)	333
Sse9I	AATT	4 cut(s)	27, 214, 344, 501
SsiI	CCGC	2 cut(s)	21, 39
SspMI	CTAG	2 cut(s)	738, 792
SstI	GAGCTC	1 cut(s)	440
StyD4I	CCNGG	1 cut(s)	593
StyI	CCWWGG	1 cut(s)	366
TaaI	ACNGT	1 cut(s)	859
TaiI	ACGT	2 cut(s)	178, 745
TaqI	TCGA	1 cut(s)	661
TasI	AATT	4 cut(s)	27, 214, 344, 501
TatI	WGTACW	1 cut(s)	137
TfiI	GAWTC	2 cut(s)	47, 129
Tru1I	TTAA	1 cut(s)	509
Tru9I	TTAA	1 cut(s)	509
TseFI	GTSAC	1 cut(s)	494
TseI	GCWGC	3 cut(s)	18, 698, 716
Tsp45I	GTSAC	1 cut(s)	494
TspDTI	ATGAA	7 cut(s)	39, 200, 253, 395, 533, 771, 820
Van91I	CCANNNNNTGG	1 cut(s)	372
XagI	CCTNNNNNAGG	1 cut(s)	365
XapI	RAATTY	2 cut(s)	214, 344
XmiI	GTMKAC	2 cut(s)	91, 733
XmnI	GAANNNNTTC	1 cut(s)	540
XspI	CTAG	2 cut(s)	738, 792
ZrmI	AGTACT	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.