Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0015232

Physical Location & Seq

Genomic Coordinates Reverse (-)

7377983 .. 7378333

Gene Structure 351 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG088100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGAGGAAGATGATGAACAACCGAAGAAGAGAATTAGAATGGGTATGCCAGCATCACAATGGACCAGTGTTTATAATGGTCGGAGACCGATGCAGCAAAGGTATCACTATAATGTAGCTGTTACAAGGCTTGCTCAGCATATTGAGAAAGGAAATGAGGATGGTTTATATATTAGCAGTGTGGCTTCTTCTCAAAATTTGTGGGCCTTGATTATGGATGCAGGCACTGGTTTCACTTCCCAAGTTTACGAACTTGCTCCGACTTGTCTTCACAAGGAATGGATAATGGAGCTGTGGGAGAAAAACTATTACATTAGTGCATTAGCGGAGCTACTAATGGGAGTTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0030100 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0032879 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0060627 GO:0065007 GO:0071704 GO:0097159 GO:0097367 GO:0098657 GO:0140096 GO:1901265 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

116

Amino Acids

13.45

Weight (kDa)

5.76

Isoelectric Point (pI)

53.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7477	PF24289	1 - 110	1.2e-57	Domain of unknown function (DUF7477)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0015232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03930
rosa_chinensis	RchiOBHm_Chr2g0164291 RchiOBHm_Chr7g0187401
rosa_laevigata	RLG00000004785 RLG00000021451
rosa_multiflora	Rmu_co8439351.1_g000001 Rmu_sc0007154.1_g000010
rosa_rugosa	Rorug02G0507900
rosa_samantha	Rh2AG575800 Rh2CG557500 Rh2DG596300 Rh7DG088000 Rh7DG088100
rosa_wichuraiana	Rw2G047690 Rw2G047770 Rw7G007560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	75
AciI	CCGC	1 cut(s)	326
AcsI	RAATTY	1 cut(s)	196
AluBI	AGCT	3 cut(s)	119, 292, 331
AluI	AGCT	3 cut(s)	119, 292, 331
Alw26I	GTCTC	1 cut(s)	79
AlwNI	CAGNNNCTG	1 cut(s)	227
AoxI	GGCC	1 cut(s)	204
ApeKI	GCWGC	1 cut(s)	94
ApoI	RAATTY	1 cut(s)	196
AspS9I	GGNCC	2 cut(s)	63, 204
AvaII	GGWCC	1 cut(s)	63
BbsI	GAAGAC	1 cut(s)	260
BbvI	GCAGC	1 cut(s)	106
BccI	CCATC	1 cut(s)	155
BcoDI	GTCTC	1 cut(s)	79
BisI	GCNGC	1 cut(s)	95
BlpI	GCTNAGC	1 cut(s)	135
BlsI	GCNGC	1 cut(s)	96
Bme18I	GGWCC	1 cut(s)	63
BmgT120I	GGNCC	2 cut(s)	63, 204
BmsI	GCATC	3 cut(s)	62, 81, 208
BpiI	GAAGAC	1 cut(s)	260
Bpu1102I	GCTNAGC	1 cut(s)	135
BsaI	GGTCTC	1 cut(s)	79
Bse1I	ACTGG	2 cut(s)	66, 232
BseGI	GGATG	2 cut(s)	166, 223
BseMII	CTCAG	1 cut(s)	149
BseNI	ACTGG	2 cut(s)	66, 232
BseXI	GCAGC	1 cut(s)	106
BshFI	GGCC	1 cut(s)	206
BsmAI	GTCTC	1 cut(s)	79
BsnI	GGCC	1 cut(s)	206
Bso31I	GGTCTC	1 cut(s)	79
Bsp1720I	GCTNAGC	1 cut(s)	135
BspACI	CCGC	1 cut(s)	326
BspANI	GGCC	1 cut(s)	206
BspCNI	CTCAG	1 cut(s)	148
BspTNI	GGTCTC	1 cut(s)	79
BsrI	ACTGG	2 cut(s)	66, 232
Bst6I	CTCTTC	1 cut(s)	23
BstC8I	GCNNGC	3 cut(s)	51, 132, 223
BstDEI	CTNAG	1 cut(s)	135
BstF5I	GGATG	2 cut(s)	166, 223
BstMAI	GTCTC	1 cut(s)	79
BstMWI	GCNNNNNNNGC	1 cut(s)	136
BstV1I	GCAGC	1 cut(s)	106
BstV2I	GAAGAC	1 cut(s)	260
BsuRI	GGCC	1 cut(s)	206
BtsCI	GGATG	2 cut(s)	166, 223
BtsI	GCAGTG	1 cut(s)	184
BtsIMutI	CAGTG	3 cut(s)	73, 184, 225
Cac8I	GCNNGC	3 cut(s)	51, 132, 223
CaiI	CAGNNNCTG	1 cut(s)	227
Cfr13I	GGNCC	2 cut(s)	63, 204
CspCI	CAANNNNNGTGG	2 cut(s)	182, 217
CviJI	RGCY	6 cut(s)	119, 130, 185, 206, 292, 331
CviKI_1	RGCY	6 cut(s)	119, 130, 185, 206, 292, 331
DdeI	CTNAG	1 cut(s)	135
Eam1104I	CTCTTC	1 cut(s)	23
EarI	CTCTTC	1 cut(s)	23
Eco31I	GGTCTC	1 cut(s)	79
Eco47I	GGWCC	1 cut(s)	63
FaiI	YATR	7 cut(s)	47, 75, 111, 141, 169, 171, 215
Fnu4HI	GCNGC	1 cut(s)	95
FokI	GGATG	2 cut(s)	173, 230
Fsp4HI	GCNGC	1 cut(s)	95
GluI	GCNGC	1 cut(s)	95
HaeIII	GGCC	1 cut(s)	206
Hpy166II	GTNNAC	1 cut(s)	247
Hpy188I	TCNGA	2 cut(s)	84, 261
Hpy8I	GTNNAC	1 cut(s)	247
HpyCH4V	TGCA	3 cut(s)	94, 221, 320
HpyF10VI	GCNNNNNNNGC	1 cut(s)	136
HpyF3I	CTNAG	1 cut(s)	135
LmnI	GCTCC	3 cut(s)	262, 289, 328
LpnPI	CCDG	4 cut(s)	63, 79, 207, 213
Lsp1109I	GCAGC	1 cut(s)	106
LweI	GCATC	3 cut(s)	62, 81, 208
MaeIII	GTNAC	1 cut(s)	121
MboII	GAAGA	5 cut(s)	20, 37, 40, 180, 260
MluCI	AATT	2 cut(s)	33, 196
MmeI	TCCRAC	2 cut(s)	62, 284
MnlI	CCTC	1 cut(s)	151
MslI	CAYNNNNRTG	2 cut(s)	58, 111
MwoI	GCNNNNNNNGC	1 cut(s)	136
PkrI	GCNGC	1 cut(s)	96
PsiI	TTATAA	1 cut(s)	75
PspPI	GGNCC	2 cut(s)	63, 204
PstNI	CAGNNNCTG	1 cut(s)	227
RseI	CAYNNNNRTG	2 cut(s)	58, 111
SatI	GCNGC	1 cut(s)	95
Sau96I	GGNCC	2 cut(s)	63, 204
SetI	ASST	4 cut(s)	104, 121, 294, 333
SfaNI	GCATC	3 cut(s)	62, 81, 208
SinI	GGWCC	1 cut(s)	63
SmiMI	CAYNNNNRTG	2 cut(s)	58, 111
Sse9I	AATT	2 cut(s)	33, 196
SsiI	CCGC	1 cut(s)	326
TaqII	GACCGA	1 cut(s)	103
TasI	AATT	2 cut(s)	33, 196
TscAI	CASTG	3 cut(s)	73, 184, 232
TseI	GCWGC	1 cut(s)	94
TspDTI	ATGAA	2 cut(s)	30, 335
TspRI	CASTG	3 cut(s)	73, 184, 232
VpaK11BI	GGWCC	1 cut(s)	63
XapI	RAATTY	1 cut(s)	196
XcmI	CCANNNNNNNNNTGG	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.