Rw7G007560

Protein kinase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0015232
Physical Location & Seq
Reverse (-)
6861056 .. 6861785
730 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G007560.1

Sequence Viewer

Length: 696 bp
ATGGACCAGTGTAACAGTGTTTATAATGGTCGGAGACCGATGAAGCAAAGGTATCACTATAATGTAGCTGTTACAAGGCTTGCTCAGCATATTGAGAAAGGAAATGAGGATGGTTTATATATTAGCAGTGTGGCTTCTTCTCAAAATTTGTGGGCCTTGATTATGGATGCAGGCACTGGTTTCACTTCCCAAGTTTACGAACTTGCTCCGACTTGTCTTCACAAGGAATGGATAATGGAGCAGTGGGAGAAAAACTATTACATTAGTGCATTAGCCGGAGCTACTAATGGGAGTTCATTAGTAGTAATGTCCAAGGTCAGTGATACATTTCCCTTTAAGTGGATTAACAAAAAGTGGAAAGAGGGCTTTTTTGTTACTTCAATGGCCGCAGCAGGAAGTTTATGGGCCATTGTTATGTCTCGGGGTTCTAATAATTATTCAGACCAAGTTGTTGAACTAGATTTCCGTTATCCTAGTGAAGGAATACAACAGCGATGGAATTCTGGATATCGTATAACAGCAACTGCAGCAACGTGTGATCAGGCCGCTTTTGTTCTTAGTGTGCCAAGGAAGAAGCCTCAAGATGAAACGCAGGAGACACTTCGTACTTCTGCTTTTCCAAGTACACATGTCAAGGAGAAAGGGGCGAAGAACCTTTATATTGCATCTATCTGTTATGGACGAACAGTATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

231

Amino Acids

26.02

Weight (kDa)

8.95

Isoelectric Point (pI)

36.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7477 PF24289 3 - 231 4.7e-127 Domain of unknown function (DUF7477)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 24
AciI CCGC 2 cut(s) 387, 546
AcoI YGGCCR 1 cut(s) 384
AcsI RAATTY 2 cut(s) 145, 499
AfaI GTAC 2 cut(s) 607, 625
AfiI CCNNNNNNNGG 2 cut(s) 339, 479
AflIII ACRYGT 2 cut(s) 533, 628
AgsI TTSAA 2 cut(s) 381, 455
AloI GAACNNNNNNTCC 2 cut(s) 447, 479
AluBI AGCT 2 cut(s) 68, 281
AluI AGCT 2 cut(s) 68, 281
Alw26I GTCTC 3 cut(s) 28, 423, 590
AlwNI CAGNNNCTG 2 cut(s) 176, 524
Ama87I CYCGRG 1 cut(s) 420
AoxI GGCC 4 cut(s) 153, 384, 405, 543
ApeKI GCWGC 2 cut(s) 389, 527
ApoI RAATTY 2 cut(s) 145, 499
AspS9I GGNCC 3 cut(s) 4, 153, 405
AvaI CYCGRG 1 cut(s) 420
AvaII GGWCC 1 cut(s) 4
BbsI GAAGAC 1 cut(s) 209
BbvI GCAGC 2 cut(s) 401, 539
BccI CCATC 2 cut(s) 104, 489
BclI TGATCA 1 cut(s) 538
BcoDI GTCTC 3 cut(s) 28, 423, 590
BfaI CTAG 2 cut(s) 458, 474
BfmI CTRYAG 1 cut(s) 525
BisI GCNGC 4 cut(s) 387, 390, 528, 546
BlpI GCTNAGC 1 cut(s) 84
BlsI GCNGC 4 cut(s) 388, 391, 529, 547
Bme18I GGWCC 1 cut(s) 4
BmeT110I CYCGRG 1 cut(s) 420
BmgT120I GGNCC 3 cut(s) 4, 153, 405
BmsI GCATC 2 cut(s) 157, 674
BpiI GAAGAC 1 cut(s) 209
Bpu1102I GCTNAGC 1 cut(s) 84
BpuEI CTTGAG 1 cut(s) 564
BsaI GGTCTC 1 cut(s) 28
BsaJI CCNNGG 2 cut(s) 312, 566
Bsc4I CCNNNNNNNGG 2 cut(s) 339, 479
Bse1I ACTGG 2 cut(s) 7, 181
BseDI CCNNGG 2 cut(s) 312, 566
BseGI GGATG 2 cut(s) 115, 172
BseLI CCNNNNNNNGG 2 cut(s) 339, 479
BseMII CTCAG 1 cut(s) 98
BseNI ACTGG 2 cut(s) 7, 181
BseXI GCAGC 2 cut(s) 401, 539
BshFI GGCC 4 cut(s) 155, 386, 407, 545
BsiHKCI CYCGRG 1 cut(s) 420
BsiSI CCGG 1 cut(s) 276
BslI CCNNNNNNNGG 2 cut(s) 339, 479
BsmAI GTCTC 3 cut(s) 28, 423, 590
BsnI GGCC 4 cut(s) 155, 386, 407, 545
Bso31I GGTCTC 1 cut(s) 28
BsoBI CYCGRG 1 cut(s) 420
Bsp143I GATC 1 cut(s) 538
Bsp1720I GCTNAGC 1 cut(s) 84
BspACI CCGC 2 cut(s) 387, 546
BspANI GGCC 4 cut(s) 155, 386, 407, 545
BspCNI CTCAG 1 cut(s) 97
BspMAI CTGCAG 1 cut(s) 529
BspTNI GGTCTC 1 cut(s) 28
BsrI ACTGG 2 cut(s) 7, 181
BssECI CCNNGG 2 cut(s) 312, 566
BssMI GATC 1 cut(s) 538
BssT1I CCWWGG 2 cut(s) 312, 566
Bst4CI ACNGT 2 cut(s) 17, 688
BstC8I GCNNGC 2 cut(s) 81, 172
BstDEI CTNAG 2 cut(s) 84, 557
BstENI CCTNNNNNAGG 1 cut(s) 477
BstF5I GGATG 2 cut(s) 115, 172
BstKTI GATC 1 cut(s) 541
BstMAI GTCTC 3 cut(s) 28, 423, 590
BstMBI GATC 1 cut(s) 538
BstMWI GCNNNNNNNGC 2 cut(s) 85, 527
BstNSI RCATGY 1 cut(s) 632
BstSFI CTRYAG 1 cut(s) 525
BstV1I GCAGC 2 cut(s) 401, 539
BstV2I GAAGAC 1 cut(s) 209
BsuRI GGCC 4 cut(s) 155, 386, 407, 545
BtgZI GCGATG 1 cut(s) 508
BtsCI GGATG 2 cut(s) 115, 172
BtsI GCAGTG 2 cut(s) 133, 248
BtsIMutI CAGTG 6 cut(s) 14, 22, 133, 174, 248, 325
Cac8I GCNNGC 2 cut(s) 81, 172
CaiI CAGNNNCTG 2 cut(s) 176, 524
Cfr13I GGNCC 3 cut(s) 4, 153, 405
Csp6I GTAC 2 cut(s) 606, 624
CspCI CAANNNNNGTGG 2 cut(s) 131, 166
CviAII CATG 1 cut(s) 629
CviQI GTAC 2 cut(s) 606, 624
DdeI CTNAG 2 cut(s) 84, 557
DpnI GATC 1 cut(s) 540
DpnII GATC 1 cut(s) 538
EaeI YGGCCR 1 cut(s) 384
Eco130I CCWWGG 2 cut(s) 312, 566
Eco31I GGTCTC 1 cut(s) 28
Eco32I GATATC 1 cut(s) 509
Eco47I GGWCC 1 cut(s) 4
Eco88I CYCGRG 1 cut(s) 420
EcoNI CCTNNNNNAGG 1 cut(s) 477
EcoRI GAATTC 1 cut(s) 499
EcoRV GATATC 1 cut(s) 509
EcoT14I CCWWGG 2 cut(s) 312, 566
ErhI CCWWGG 2 cut(s) 312, 566
FaeI CATG 1 cut(s) 632
FatI CATG 1 cut(s) 628
FbaI TGATCA 1 cut(s) 538
Fnu4HI GCNGC 4 cut(s) 387, 390, 528, 546
FokI GGATG 2 cut(s) 122, 179
Fsp4HI GCNGC 4 cut(s) 387, 390, 528, 546
FspBI CTAG 2 cut(s) 458, 474
GluI GCNGC 4 cut(s) 387, 390, 528, 546
HaeIII GGCC 4 cut(s) 155, 386, 407, 545
HapII CCGG 1 cut(s) 276
Hin1II CATG 1 cut(s) 632
HpaII CCGG 1 cut(s) 276
Hpy166II GTNNAC 2 cut(s) 196, 626
Hpy188I TCNGA 3 cut(s) 33, 210, 442
Hpy188III TCNNGA 2 cut(s) 504, 581
Hpy8I GTNNAC 2 cut(s) 196, 626
HpyAV CCTTC 1 cut(s) 473
HpyCH4III ACNGT 2 cut(s) 17, 688
HpyCH4IV ACGT 1 cut(s) 533
HpyCH4V TGCA 4 cut(s) 170, 269, 527, 665
HpyF10VI GCNNNNNNNGC 2 cut(s) 85, 527
HpyF3I CTNAG 2 cut(s) 84, 557
HpySE526I ACGT 1 cut(s) 533
Hsp92II CATG 1 cut(s) 632
Ksp22I TGATCA 1 cut(s) 538
Kzo9I GATC 1 cut(s) 538
LmnI GCTCC 3 cut(s) 211, 238, 278
LpnPI CCDG 8 cut(s) 20, 156, 162, 289, 378, 489, 527, 578
Lsp1109I GCAGC 2 cut(s) 401, 539
LweI GCATC 2 cut(s) 157, 674
MaeI CTAG 2 cut(s) 458, 474
MaeII ACGT 1 cut(s) 533
MaeIII GTNAC 3 cut(s) 11, 70, 373
MalI GATC 1 cut(s) 540
MboI GATC 1 cut(s) 538
MboII GAAGA 4 cut(s) 129, 209, 583, 661
MluCI AATT 3 cut(s) 145, 433, 499
MmeI TCCRAC 2 cut(s) 11, 233
MnlI CCTC 3 cut(s) 100, 355, 588
MseI TTAA 2 cut(s) 336, 345
MslI CAYNNNNRTG 2 cut(s) 60, 413
MspI CCGG 1 cut(s) 276
MwoI GCNNNNNNNGC 2 cut(s) 85, 527
NdeII GATC 1 cut(s) 538
NlaIII CATG 1 cut(s) 632
NspI RCATGY 1 cut(s) 632
PciI ACATGT 1 cut(s) 628
PkrI GCNGC 4 cut(s) 388, 391, 529, 547
PscI ACATGT 1 cut(s) 628
PsiI TTATAA 1 cut(s) 24
PspPI GGNCC 3 cut(s) 4, 153, 405
PstI CTGCAG 1 cut(s) 529
PstNI CAGNNNCTG 2 cut(s) 176, 524
RsaI GTAC 2 cut(s) 607, 625
RsaNI GTAC 2 cut(s) 606, 624
RseI CAYNNNNRTG 2 cut(s) 60, 413
SaqAI TTAA 2 cut(s) 336, 345
SatI GCNGC 4 cut(s) 387, 390, 528, 546
Sau3AI GATC 1 cut(s) 538
Sau96I GGNCC 3 cut(s) 4, 153, 405
SetI ASST 6 cut(s) 53, 70, 283, 318, 536, 657
SfaNI GCATC 2 cut(s) 157, 674
SfcI CTRYAG 1 cut(s) 525
SinI GGWCC 1 cut(s) 4
SmiMI CAYNNNNRTG 2 cut(s) 60, 413
SmlI CTYRAG 1 cut(s) 579
SmoI CTYRAG 1 cut(s) 579
Sse9I AATT 3 cut(s) 145, 433, 499
SsiI CCGC 2 cut(s) 387, 546
SspMI CTAG 2 cut(s) 458, 474
StyI CCWWGG 2 cut(s) 312, 566
TaaI ACNGT 2 cut(s) 17, 688
TaiI ACGT 1 cut(s) 536
TaqII GACCGA 1 cut(s) 52
TasI AATT 3 cut(s) 145, 433, 499
TatI WGTACW 1 cut(s) 623
TauI GCSGC 2 cut(s) 389, 548
Tru1I TTAA 2 cut(s) 336, 345
Tru9I TTAA 2 cut(s) 336, 345
TscAI CASTG 6 cut(s) 14, 22, 133, 181, 248, 325
TseI GCWGC 2 cut(s) 389, 527
TspDTI ATGAA 3 cut(s) 56, 285, 600
TspGWI ACGGA 1 cut(s) 455
TspRI CASTG 6 cut(s) 14, 22, 133, 181, 248, 325
VpaK11BI GGWCC 1 cut(s) 4
XagI CCTNNNNNAGG 1 cut(s) 477
XapI RAATTY 2 cut(s) 145, 499
XceI RCATGY 1 cut(s) 632
XspI CTAG 2 cut(s) 458, 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.