Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015232

Physical Location & Seq

Genomic Coordinates Forward (+)

79477115 .. 79478041

Gene Structure 927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53237

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGAACTATTCACCTGTTTACTTGCAGGAGGAGTGGATAATGGAACAGTGGGACAAGAACTACCATATCACTTCACTTGCTGGCGCAGGCAATGGCAGTGCCTTGGTGGTAATGTCCAAAGGTATGTCAAACAAATTAACAGAGCTTCATGTTGTCCGTGGAAGTTTGGCTATAGGAATCTGGTCGGTCCCTGATGATAATGACTCATCTTATTATTTTTTTTTCATAGGGATCCGTGTAGTACATTTTCACTTGTTTGAGCTACTCTTTTTTTTATTGCTAATCTTCTATTTGTCACCCATTGAAGGCCTACCATATACTCAGCAGTTGTACAAAGTCAGTGATATATTCCCTTTCCAATGGAATAATAAGAAATGGAAAGAAGGTTTCTCTGTTACCTCCATGACTACTGCAGGTAGCAGATGGGGCATTGTCATGTCCAGAAATGCAGGTTATTCTAATCAGGTTGTTGAGATTGATTTCCTATATCCAAGCGAAGGCATCCATGGAAGATGGGAGAATGGATATCGCATTTACCTCAACTGCTGCAACAGAGGATTAAGTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007623 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010468 GO:0010604 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032501 GO:0032922 GO:0036211 GO:0042176 GO:0042752 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048511 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0065007 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

189

Amino Acids

21.84

Weight (kDa)

6.19

Isoelectric Point (pI)

44.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7477	PF24289	2 - 44	8.9e-15	Domain of unknown function (DUF7477)
DUF7477	PF24289	102 - 179	1.5e-41	Domain of unknown function (DUF7477)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03930
rosa_chinensis	RchiOBHm_Chr2g0164291 RchiOBHm_Chr7g0187401
rosa_laevigata	RLG00000004785 RLG00000021451
rosa_multiflora	Rmu_co8439351.1_g000001 Rmu_sc0007154.1_g000010
rosa_rugosa	Rorug02G0507900
rosa_samantha	Rh2AG575800 Rh2CG557500 Rh2DG596300 Rh7DG088000 Rh7DG088100
rosa_wichuraiana	Rw2G047690 Rw2G047770 Rw7G007560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	404, 440
AclWI	GGATC	2 cut(s)	226, 239
AfaI	GTAC	2 cut(s)	243, 332
AfiI	CCNNNNNNNGG	2 cut(s)	305, 497
AgsI	TTSAA	1 cut(s)	305
AluBI	AGCT	2 cut(s)	145, 262
AluI	AGCT	2 cut(s)	145, 262
AlwI	GGATC	2 cut(s)	226, 239
AoxI	GGCC	1 cut(s)	307
ApeKI	GCWGC	1 cut(s)	546
AspLEI	GCGC	1 cut(s)	86
AspS9I	GGNCC	1 cut(s)	187
AsuHPI	GGTGA	2 cut(s)	3, 288
AvaII	GGWCC	1 cut(s)	187
BamHI	GGATCC	1 cut(s)	231
BbvI	GCAGC	1 cut(s)	533
BccI	CCATC	2 cut(s)	417, 507
BfmI	CTRYAG	2 cut(s)	171, 411
BfuAI	ACCTGC	2 cut(s)	404, 440
BisI	GCNGC	1 cut(s)	547
BlsI	GCNGC	1 cut(s)	548
Bme18I	GGWCC	1 cut(s)	187
BmgT120I	GGNCC	1 cut(s)	187
BmiI	GGNNCC	2 cut(s)	189, 233
BmsI	GCATC	1 cut(s)	510
BsaJI	CCNNGG	3 cut(s)	102, 157, 505
Bsc4I	CCNNNNNNNGG	2 cut(s)	305, 497
Bse3DI	GCAATG	1 cut(s)	97
BseDI	CCNNGG	3 cut(s)	102, 157, 505
BseGI	GGATG	1 cut(s)	501
BseLI	CCNNNNNNNGG	2 cut(s)	305, 497
BseMI	GCAATG	1 cut(s)	97
BseMII	CTCAG	1 cut(s)	335
BseRI	GAGGAG	1 cut(s)	44
BseXI	GCAGC	1 cut(s)	533
BshFI	GGCC	1 cut(s)	309
BslFI	GGGAC	2 cut(s)	65, 173
BslI	CCNNNNNNNGG	2 cut(s)	305, 497
BsmFI	GGGAC	2 cut(s)	65, 173
BsnI	GGCC	1 cut(s)	309
Bsp1407I	TGTACA	1 cut(s)	330
Bsp143I	GATC	1 cut(s)	231
Bsp19I	CCATGG	1 cut(s)	505
BspANI	GGCC	1 cut(s)	309
BspCNI	CTCAG	1 cut(s)	334
BspLI	GGNNCC	2 cut(s)	189, 233
BspMAI	CTGCAG	1 cut(s)	415
BspMI	ACCTGC	2 cut(s)	404, 440
BspPI	GGATC	2 cut(s)	226, 239
BsrDI	GCAATG	1 cut(s)	97
BsrGI	TGTACA	1 cut(s)	330
BssECI	CCNNGG	3 cut(s)	102, 157, 505
BssMI	GATC	1 cut(s)	231
BssT1I	CCWWGG	2 cut(s)	102, 505
Bst4CI	ACNGT	1 cut(s)	48
BstAUI	TGTACA	1 cut(s)	330
BstC8I	GCNNGC	2 cut(s)	82, 88
BstDEI	CTNAG	1 cut(s)	321
BstDSI	CCRYGG	2 cut(s)	157, 505
BstF5I	GGATG	1 cut(s)	501
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	1 cut(s)	234
BstMBI	GATC	1 cut(s)	231
BstMWI	GCNNNNNNNGC	1 cut(s)	426
BstSFI	CTRYAG	2 cut(s)	171, 411
BstV1I	GCAGC	1 cut(s)	533
BstX2I	RGATCY	1 cut(s)	231
BstYI	RGATCY	1 cut(s)	231
BsuRI	GGCC	1 cut(s)	309
BtgI	CCRYGG	2 cut(s)	157, 505
BtsCI	GGATG	1 cut(s)	501
BtsI	GCAGTG	1 cut(s)	103
BtsIMutI	CAGTG	3 cut(s)	53, 103, 346
BveI	ACCTGC	2 cut(s)	404, 440
Cac8I	GCNNGC	2 cut(s)	82, 88
CfoI	GCGC	1 cut(s)	86
Cfr13I	GGNCC	1 cut(s)	187
Csp6I	GTAC	2 cut(s)	242, 331
CviAII	CATG	4 cut(s)	149, 403, 436, 506
CviJI	RGCY	4 cut(s)	145, 170, 262, 309
CviKI_1	RGCY	4 cut(s)	145, 170, 262, 309
CviQI	GTAC	2 cut(s)	242, 331
DdeI	CTNAG	1 cut(s)	321
DpnI	GATC	1 cut(s)	233
DpnII	GATC	1 cut(s)	231
Eco130I	CCWWGG	2 cut(s)	102, 505
Eco147I	AGGCCT	1 cut(s)	309
Eco32I	GATATC	1 cut(s)	527
Eco47I	GGWCC	1 cut(s)	187
EcoRV	GATATC	1 cut(s)	527
EcoT14I	CCWWGG	2 cut(s)	102, 505
ErhI	CCWWGG	2 cut(s)	102, 505
FaeI	CATG	4 cut(s)	152, 406, 439, 509
FaqI	GGGAC	2 cut(s)	65, 173
FatI	CATG	4 cut(s)	148, 402, 435, 505
Fnu4HI	GCNGC	1 cut(s)	547
FokI	GGATG	1 cut(s)	488
Fsp4HI	GCNGC	1 cut(s)	547
GlaI	GCGC	1 cut(s)	85
GluI	GCNGC	1 cut(s)	547
HaeIII	GGCC	1 cut(s)	309
HhaI	GCGC	1 cut(s)	86
Hin1II	CATG	4 cut(s)	152, 406, 439, 509
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HinfI	GANTC	2 cut(s)	177, 203
HphI	GGTGA	2 cut(s)	3, 288
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188III	TCNNGA	1 cut(s)	441
Hpy8I	GTNNAC	1 cut(s)	19
HpyAV	CCTTC	3 cut(s)	299, 377, 491
HpyCH4III	ACNGT	1 cut(s)	48
HpyCH4V	TGCA	4 cut(s)	25, 413, 449, 549
HpyF10VI	GCNNNNNNNGC	1 cut(s)	426
HpyF3I	CTNAG	1 cut(s)	321
Hsp92II	CATG	4 cut(s)	152, 406, 439, 509
HspAI	GCGC	1 cut(s)	84
Kzo9I	GATC	1 cut(s)	231
Lsp1109I	GCAGC	1 cut(s)	533
LweI	GCATC	1 cut(s)	510
MaeIII	GTNAC	3 cut(s)	294, 394, 563
MalI	GATC	1 cut(s)	233
MboI	GATC	1 cut(s)	231
MboII	GAAGA	2 cut(s)	277, 522
MflI	RGATCY	1 cut(s)	231
MluCI	AATT	1 cut(s)	134
MlyI	GAGTC	1 cut(s)	197
MnlI	CCTC	4 cut(s)	22, 409, 548, 548
MseI	TTAA	2 cut(s)	137, 560
MslI	CAYNNNNRTG	1 cut(s)	434
MwoI	GCNNNNNNNGC	1 cut(s)	426
NcoI	CCATGG	1 cut(s)	505
NdeII	GATC	1 cut(s)	231
NlaIII	CATG	4 cut(s)	152, 406, 439, 509
NlaIV	GGNNCC	2 cut(s)	189, 233
NmuCI	GTSAC	1 cut(s)	294
PceI	AGGCCT	1 cut(s)	309
PfeI	GAWTC	1 cut(s)	177
PkrI	GCNGC	1 cut(s)	548
PleI	GAGTC	1 cut(s)	197
PpsI	GAGTC	1 cut(s)	197
PspN4I	GGNNCC	2 cut(s)	189, 233
PspPI	GGNCC	1 cut(s)	187
PstI	CTGCAG	1 cut(s)	415
PsuI	RGATCY	1 cut(s)	231
RsaI	GTAC	2 cut(s)	243, 332
RsaNI	GTAC	2 cut(s)	242, 331
RseI	CAYNNNNRTG	1 cut(s)	434
SaqAI	TTAA	2 cut(s)	137, 560
SatI	GCNGC	1 cut(s)	547
Sau3AI	GATC	1 cut(s)	231
Sau96I	GGNCC	1 cut(s)	187
SchI	GAGTC	1 cut(s)	197
SfaNI	GCATC	1 cut(s)	510
SfcI	CTRYAG	2 cut(s)	171, 411
SinI	GGWCC	1 cut(s)	187
SmiMI	CAYNNNNRTG	1 cut(s)	434
Sse9I	AATT	1 cut(s)	134
SseBI	AGGCCT	1 cut(s)	309
StuI	AGGCCT	1 cut(s)	309
StyI	CCWWGG	2 cut(s)	102, 505
TaaI	ACNGT	1 cut(s)	48
TaqII	GACCGA	1 cut(s)	175
TasI	AATT	1 cut(s)	134
TatI	WGTACW	2 cut(s)	241, 330
TfiI	GAWTC	1 cut(s)	177
Tru1I	TTAA	2 cut(s)	137, 560
Tru9I	TTAA	2 cut(s)	137, 560
TscAI	CASTG	3 cut(s)	53, 103, 346
TseFI	GTSAC	1 cut(s)	294
TseI	GCWGC	1 cut(s)	546
Tsp45I	GTSAC	1 cut(s)	294
TspDTI	ATGAA	3 cut(s)	17, 137, 214
TspGWI	ACGGA	2 cut(s)	146, 224
TspRI	CASTG	3 cut(s)	53, 103, 346
VpaK11BI	GGWCC	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.