Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015232

Physical Location & Seq

Genomic Coordinates Reverse (-)

7206685 .. 7207146

Gene Structure 462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16727

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGTCCAAGGGTACAAATTTTATAAAGCAGTCATATATAGTCAGTGATACATTTCCCTTTAAGTGGATTAACAAAAAGTGGAAAGAGGGCTTTTTTGTTACGTCAATGGCCGCTGCAGGAAGTTTATGGGCCATTGTTATGTCTCGGGGTTCTAATTATTCAGACCAAGTTGTTGAACTAGATTTCCGTTATCCTAATGAAGGAAGACATCAGCGATGGAATTCTGGATATCGTATAACAGCAACTGCAGCACGTGTGATCAGGCCGCTTTTGTTCTCAGTGTGCCAAGGAAGAAGCCTCAAGATGAACCGCAGGAGACACTTCGTACTTCTGCTTTTCCTAGTACACATGTCAGGGAGAAGGGGGCGAAGAACCTTTATATTGCATCTATCTGTTATGGACGAACAGTATCATAAAGGCAGCGACCTTTCTCTGGGATTGCTGCAGACCCACTGCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0030100 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0032879 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0060627 GO:0065007 GO:0071704 GO:0097159 GO:0097367 GO:0098657 GO:0140096 GO:1901265 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

153

Amino Acids

17.82

Weight (kDa)

10.64

Isoelectric Point (pI)

53.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7477	PF24289	1 - 87	3.5e-45	Domain of unknown function (DUF7477)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03930
rosa_chinensis	RchiOBHm_Chr2g0164291 RchiOBHm_Chr7g0187401
rosa_laevigata	RLG00000004785 RLG00000021451
rosa_multiflora	Rmu_co8439351.1_g000001 Rmu_sc0007154.1_g000010
rosa_rugosa	Rorug02G0507900
rosa_samantha	Rh2AG575800 Rh2CG557500 Rh2DG596300 Rh7DG088000 Rh7DG088100
rosa_wichuraiana	Rw2G047690 Rw2G047770 Rw7G007560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	23
AciI	CCGC	3 cut(s)	111, 266, 310
AcoI	YGGCCR	1 cut(s)	108
AcsI	RAATTY	2 cut(s)	16, 220
AcvI	CACGTG	1 cut(s)	254
AfaI	GTAC	3 cut(s)	13, 327, 345
AfiI	CCNNNNNNNGG	3 cut(s)	63, 200, 433
AflIII	ACRYGT	2 cut(s)	253, 348
AgsI	TTSAA	1 cut(s)	176
AloI	GAACNNNNNNTCC	2 cut(s)	168, 200
Alw26I	GTCTC	2 cut(s)	147, 310
AlwNI	CAGNNNCTG	1 cut(s)	245
Ama87I	CYCGRG	1 cut(s)	144
AoxI	GGCC	3 cut(s)	108, 129, 263
ApeKI	GCWGC	4 cut(s)	113, 248, 420, 442
ApoI	RAATTY	2 cut(s)	16, 220
AspS9I	GGNCC	1 cut(s)	129
AvaI	CYCGRG	1 cut(s)	144
BbrPI	CACGTG	1 cut(s)	254
BbsI	GAAGAC	1 cut(s)	211
BbvI	GCAGC	4 cut(s)	100, 260, 429, 432
BccI	CCATC	1 cut(s)	210
BclI	TGATCA	1 cut(s)	258
BcoDI	GTCTC	2 cut(s)	147, 310
BfaI	CTAG	2 cut(s)	179, 341
BfmI	CTRYAG	3 cut(s)	114, 246, 443
BisI	GCNGC	6 cut(s)	111, 114, 249, 266, 421, 443
BlsI	GCNGC	6 cut(s)	112, 115, 250, 267, 422, 444
BmeT110I	CYCGRG	1 cut(s)	144
BmgT120I	GGNCC	1 cut(s)	129
BmsI	GCATC	1 cut(s)	394
BpiI	GAAGAC	1 cut(s)	211
BpuEI	CTTGAG	1 cut(s)	284
BsaAI	YACGTR	1 cut(s)	254
BsaJI	CCNNGG	2 cut(s)	6, 286
Bsc4I	CCNNNNNNNGG	3 cut(s)	63, 200, 433
BseDI	CCNNGG	2 cut(s)	6, 286
BseLI	CCNNNNNNNGG	3 cut(s)	63, 200, 433
BseMII	CTCAG	1 cut(s)	291
BseXI	GCAGC	4 cut(s)	100, 260, 429, 432
BshFI	GGCC	3 cut(s)	110, 131, 265
BsiHKCI	CYCGRG	1 cut(s)	144
BslI	CCNNNNNNNGG	3 cut(s)	63, 200, 433
BsmAI	GTCTC	2 cut(s)	147, 310
BsnI	GGCC	3 cut(s)	110, 131, 265
BsoBI	CYCGRG	1 cut(s)	144
Bsp143I	GATC	1 cut(s)	258
BspACI	CCGC	3 cut(s)	111, 266, 310
BspANI	GGCC	3 cut(s)	110, 131, 265
BspCNI	CTCAG	1 cut(s)	290
BspMAI	CTGCAG	3 cut(s)	118, 250, 447
BssECI	CCNNGG	2 cut(s)	6, 286
BssMI	GATC	1 cut(s)	258
BssT1I	CCWWGG	2 cut(s)	6, 286
Bst4CI	ACNGT	1 cut(s)	408
BstBAI	YACGTR	1 cut(s)	254
BstDEI	CTNAG	1 cut(s)	277
BstENI	CCTNNNNNAGG	1 cut(s)	198
BstKTI	GATC	1 cut(s)	261
BstMAI	GTCTC	2 cut(s)	147, 310
BstMBI	GATC	1 cut(s)	258
BstMWI	GCNNNNNNNGC	1 cut(s)	248
BstNSI	RCATGY	1 cut(s)	352
BstSFI	CTRYAG	3 cut(s)	114, 246, 443
BstV1I	GCAGC	4 cut(s)	100, 260, 429, 432
BstV2I	GAAGAC	1 cut(s)	211
BsuRI	GGCC	3 cut(s)	110, 131, 265
BtgZI	GCGATG	1 cut(s)	229
BtsI	GCAGTG	1 cut(s)	451
BtsIMutI	CAGTG	3 cut(s)	49, 285, 451
CaiI	CAGNNNCTG	1 cut(s)	245
Cfr13I	GGNCC	1 cut(s)	129
Csp6I	GTAC	3 cut(s)	12, 326, 344
CviAII	CATG	1 cut(s)	349
CviJI	RGCY	5 cut(s)	90, 110, 131, 265, 297
CviKI_1	RGCY	5 cut(s)	90, 110, 131, 265, 297
CviQI	GTAC	3 cut(s)	12, 326, 344
DdeI	CTNAG	1 cut(s)	277
DpnI	GATC	1 cut(s)	260
DpnII	GATC	1 cut(s)	258
EaeI	YGGCCR	1 cut(s)	108
Eco130I	CCWWGG	2 cut(s)	6, 286
Eco32I	GATATC	1 cut(s)	230
Eco72I	CACGTG	1 cut(s)	254
Eco88I	CYCGRG	1 cut(s)	144
EcoNI	CCTNNNNNAGG	1 cut(s)	198
EcoRI	GAATTC	1 cut(s)	220
EcoRV	GATATC	1 cut(s)	230
EcoT14I	CCWWGG	2 cut(s)	6, 286
ErhI	CCWWGG	2 cut(s)	6, 286
FaeI	CATG	1 cut(s)	352
FatI	CATG	1 cut(s)	348
FbaI	TGATCA	1 cut(s)	258
Fnu4HI	GCNGC	6 cut(s)	111, 114, 249, 266, 421, 443
Fsp4HI	GCNGC	6 cut(s)	111, 114, 249, 266, 421, 443
FspBI	CTAG	2 cut(s)	179, 341
GluI	GCNGC	6 cut(s)	111, 114, 249, 266, 421, 443
HaeIII	GGCC	3 cut(s)	110, 131, 265
Hin1II	CATG	1 cut(s)	352
Hpy166II	GTNNAC	1 cut(s)	346
Hpy188I	TCNGA	1 cut(s)	163
Hpy188III	TCNNGA	2 cut(s)	225, 301
Hpy8I	GTNNAC	1 cut(s)	346
HpyAV	CCTTC	2 cut(s)	194, 354
HpyCH4III	ACNGT	1 cut(s)	408
HpyCH4IV	ACGT	2 cut(s)	101, 253
HpyCH4V	TGCA	5 cut(s)	116, 248, 385, 445, 456
HpyF10VI	GCNNNNNNNGC	1 cut(s)	248
HpyF3I	CTNAG	1 cut(s)	277
HpySE526I	ACGT	2 cut(s)	101, 253
Hsp92II	CATG	1 cut(s)	352
Ksp22I	TGATCA	1 cut(s)	258
Kzo9I	GATC	1 cut(s)	258
LpnPI	CCDG	6 cut(s)	102, 210, 247, 298, 339, 419
Lsp1109I	GCAGC	4 cut(s)	100, 260, 429, 432
LweI	GCATC	1 cut(s)	394
MaeI	CTAG	2 cut(s)	179, 341
MaeII	ACGT	2 cut(s)	101, 253
MaeIII	GTNAC	1 cut(s)	97
MalI	GATC	1 cut(s)	260
MboI	GATC	1 cut(s)	258
MboII	GAAGA	3 cut(s)	216, 303, 381
MluCI	AATT	3 cut(s)	16, 154, 220
MnlI	CCTC	2 cut(s)	79, 308
MseI	TTAA	2 cut(s)	60, 69
MslI	CAYNNNNRTG	1 cut(s)	137
MspA1I	CMGCKG	1 cut(s)	113
MwoI	GCNNNNNNNGC	1 cut(s)	248
NdeII	GATC	1 cut(s)	258
NlaIII	CATG	1 cut(s)	352
NspI	RCATGY	1 cut(s)	352
PciI	ACATGT	1 cut(s)	348
PkrI	GCNGC	6 cut(s)	112, 115, 250, 267, 422, 444
PmaCI	CACGTG	1 cut(s)	254
PmlI	CACGTG	1 cut(s)	254
Ppu21I	YACGTR	1 cut(s)	254
PscI	ACATGT	1 cut(s)	348
PsiI	TTATAA	1 cut(s)	23
PspCI	CACGTG	1 cut(s)	254
PspPI	GGNCC	1 cut(s)	129
PstI	CTGCAG	3 cut(s)	118, 250, 447
PstNI	CAGNNNCTG	1 cut(s)	245
RsaI	GTAC	3 cut(s)	13, 327, 345
RsaNI	GTAC	3 cut(s)	12, 326, 344
RseI	CAYNNNNRTG	1 cut(s)	137
SaqAI	TTAA	2 cut(s)	60, 69
SatI	GCNGC	6 cut(s)	111, 114, 249, 266, 421, 443
Sau3AI	GATC	1 cut(s)	258
Sau96I	GGNCC	1 cut(s)	129
SetI	ASST	4 cut(s)	104, 256, 377, 429
SfaNI	GCATC	1 cut(s)	394
SfcI	CTRYAG	3 cut(s)	114, 246, 443
SmiMI	CAYNNNNRTG	1 cut(s)	137
SmlI	CTYRAG	1 cut(s)	299
SmoI	CTYRAG	1 cut(s)	299
Sse9I	AATT	3 cut(s)	16, 154, 220
SsiI	CCGC	3 cut(s)	111, 266, 310
SspMI	CTAG	2 cut(s)	179, 341
StyI	CCWWGG	2 cut(s)	6, 286
TaaI	ACNGT	1 cut(s)	408
TaiI	ACGT	2 cut(s)	104, 256
TasI	AATT	3 cut(s)	16, 154, 220
TatI	WGTACW	1 cut(s)	343
TauI	GCSGC	2 cut(s)	113, 268
Tru1I	TTAA	2 cut(s)	60, 69
Tru9I	TTAA	2 cut(s)	60, 69
TscAI	CASTG	3 cut(s)	49, 285, 458
TseI	GCWGC	4 cut(s)	113, 248, 420, 442
TspDTI	ATGAA	2 cut(s)	213, 320
TspGWI	ACGGA	1 cut(s)	176
TspRI	CASTG	3 cut(s)	49, 285, 458
XagI	CCTNNNNNAGG	1 cut(s)	198
XapI	RAATTY	2 cut(s)	16, 220
XceI	RCATGY	1 cut(s)	352
XspI	CTAG	2 cut(s)	179, 341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.