Rh7DG088000

Casein Kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0015232
Physical Location & Seq
Reverse (-)
7377516 .. 7377872
357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG088000.1

Sequence Viewer

Length: 357 bp
ATGGCCGCTGCAGGAAGTTTATGGGCCATTGTTATGTCTCGGGGTTCTAATTATTCAGACCAAGTTGTTGAACTAGATTTCCGTTATCCTAATGAAGGAAGACATCAGCGATGGAATTCTGGATATCGTATAACAGCAACTGCAGCACGTGTGATCAGGCCGCTTTTGTTCTCAGTGTGCCAAGGAAGAAGCCTCAAGATGAACCGCAGGAGACACTTCGTACTTCTGCTTTTCCTAGTACACATGTCAGGGAGAAGGGGGCGAAGAACCTTTATATTGCATCTATCTGTTATGGACGAACAGTATCATAAAGGCAGCGACCTTTCTCTGGGATTGCTGCAGACCCACTGCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

118

Amino Acids

13.65

Weight (kDa)

11.07

Isoelectric Point (pI)

58.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7477 PF24289 1 - 52 1.5e-21 Domain of unknown function (DUF7477)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 6, 161, 205
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 115
AcvI CACGTG 1 cut(s) 149
AfaI GTAC 2 cut(s) 222, 240
AfiI CCNNNNNNNGG 2 cut(s) 95, 328
AflIII ACRYGT 2 cut(s) 148, 243
AgsI TTSAA 1 cut(s) 71
AloI GAACNNNNNNTCC 2 cut(s) 63, 95
Alw26I GTCTC 2 cut(s) 42, 205
AlwNI CAGNNNCTG 1 cut(s) 140
Ama87I CYCGRG 1 cut(s) 39
AoxI GGCC 3 cut(s) 3, 24, 158
ApeKI GCWGC 4 cut(s) 8, 143, 315, 337
ApoI RAATTY 1 cut(s) 115
AspS9I GGNCC 1 cut(s) 24
AvaI CYCGRG 1 cut(s) 39
BbrPI CACGTG 1 cut(s) 149
BbsI GAAGAC 1 cut(s) 106
BbvI GCAGC 3 cut(s) 155, 324, 327
BccI CCATC 1 cut(s) 105
BclI TGATCA 1 cut(s) 153
BcoDI GTCTC 2 cut(s) 42, 205
BfaI CTAG 2 cut(s) 74, 236
BfmI CTRYAG 3 cut(s) 9, 141, 338
BisI GCNGC 6 cut(s) 6, 9, 144, 161, 316, 338
BlsI GCNGC 6 cut(s) 7, 10, 145, 162, 317, 339
BmeT110I CYCGRG 1 cut(s) 39
BmgT120I GGNCC 1 cut(s) 24
BmsI GCATC 1 cut(s) 289
BpiI GAAGAC 1 cut(s) 106
BpuEI CTTGAG 1 cut(s) 179
BsaAI YACGTR 1 cut(s) 149
BsaJI CCNNGG 1 cut(s) 181
Bsc4I CCNNNNNNNGG 2 cut(s) 95, 328
BseDI CCNNGG 1 cut(s) 181
BseLI CCNNNNNNNGG 2 cut(s) 95, 328
BseMII CTCAG 1 cut(s) 186
BseXI GCAGC 3 cut(s) 155, 324, 327
BshFI GGCC 3 cut(s) 5, 26, 160
BsiHKCI CYCGRG 1 cut(s) 39
BslI CCNNNNNNNGG 2 cut(s) 95, 328
BsmAI GTCTC 2 cut(s) 42, 205
BsnI GGCC 3 cut(s) 5, 26, 160
BsoBI CYCGRG 1 cut(s) 39
Bsp143I GATC 1 cut(s) 153
BspACI CCGC 3 cut(s) 6, 161, 205
BspANI GGCC 3 cut(s) 5, 26, 160
BspCNI CTCAG 1 cut(s) 185
BspMAI CTGCAG 3 cut(s) 13, 145, 342
BssECI CCNNGG 1 cut(s) 181
BssMI GATC 1 cut(s) 153
BssT1I CCWWGG 1 cut(s) 181
Bst4CI ACNGT 1 cut(s) 303
BstBAI YACGTR 1 cut(s) 149
BstDEI CTNAG 1 cut(s) 172
BstENI CCTNNNNNAGG 1 cut(s) 93
BstKTI GATC 1 cut(s) 156
BstMAI GTCTC 2 cut(s) 42, 205
BstMBI GATC 1 cut(s) 153
BstMWI GCNNNNNNNGC 1 cut(s) 143
BstNSI RCATGY 1 cut(s) 247
BstSFI CTRYAG 3 cut(s) 9, 141, 338
BstV1I GCAGC 3 cut(s) 155, 324, 327
BstV2I GAAGAC 1 cut(s) 106
BsuRI GGCC 3 cut(s) 5, 26, 160
BtgZI GCGATG 1 cut(s) 124
BtsI GCAGTG 1 cut(s) 346
BtsIMutI CAGTG 2 cut(s) 180, 346
CaiI CAGNNNCTG 1 cut(s) 140
Cfr13I GGNCC 1 cut(s) 24
Csp6I GTAC 2 cut(s) 221, 239
CviAII CATG 1 cut(s) 244
CviJI RGCY 4 cut(s) 5, 26, 160, 192
CviKI_1 RGCY 4 cut(s) 5, 26, 160, 192
CviQI GTAC 2 cut(s) 221, 239
DdeI CTNAG 1 cut(s) 172
DpnI GATC 1 cut(s) 155
DpnII GATC 1 cut(s) 153
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 181
Eco32I GATATC 1 cut(s) 125
Eco72I CACGTG 1 cut(s) 149
Eco88I CYCGRG 1 cut(s) 39
EcoNI CCTNNNNNAGG 1 cut(s) 93
EcoRI GAATTC 1 cut(s) 115
EcoRV GATATC 1 cut(s) 125
EcoT14I CCWWGG 1 cut(s) 181
ErhI CCWWGG 1 cut(s) 181
FaeI CATG 1 cut(s) 247
FaiI YATR 7 cut(s) 22, 35, 131, 245, 275, 293, 309
FatI CATG 1 cut(s) 243
FbaI TGATCA 1 cut(s) 153
Fnu4HI GCNGC 6 cut(s) 6, 9, 144, 161, 316, 338
Fsp4HI GCNGC 6 cut(s) 6, 9, 144, 161, 316, 338
FspBI CTAG 2 cut(s) 74, 236
GluI GCNGC 6 cut(s) 6, 9, 144, 161, 316, 338
HaeIII GGCC 3 cut(s) 5, 26, 160
Hin1II CATG 1 cut(s) 247
Hpy166II GTNNAC 1 cut(s) 241
Hpy188I TCNGA 1 cut(s) 58
Hpy188III TCNNGA 2 cut(s) 120, 196
Hpy8I GTNNAC 1 cut(s) 241
HpyAV CCTTC 2 cut(s) 89, 249
HpyCH4III ACNGT 1 cut(s) 303
HpyCH4IV ACGT 1 cut(s) 148
HpyCH4V TGCA 5 cut(s) 11, 143, 280, 340, 351
HpyF10VI GCNNNNNNNGC 1 cut(s) 143
HpyF3I CTNAG 1 cut(s) 172
HpySE526I ACGT 1 cut(s) 148
Hsp92II CATG 1 cut(s) 247
Ksp22I TGATCA 1 cut(s) 153
Kzo9I GATC 1 cut(s) 153
LpnPI CCDG 5 cut(s) 105, 142, 193, 234, 314
Lsp1109I GCAGC 3 cut(s) 155, 324, 327
LweI GCATC 1 cut(s) 289
MaeI CTAG 2 cut(s) 74, 236
MaeII ACGT 1 cut(s) 148
MalI GATC 1 cut(s) 155
MboI GATC 1 cut(s) 153
MboII GAAGA 3 cut(s) 111, 198, 276
MluCI AATT 2 cut(s) 49, 115
MnlI CCTC 1 cut(s) 203
MslI CAYNNNNRTG 1 cut(s) 32
MspA1I CMGCKG 1 cut(s) 8
MwoI GCNNNNNNNGC 1 cut(s) 143
NdeII GATC 1 cut(s) 153
NlaIII CATG 1 cut(s) 247
NspI RCATGY 1 cut(s) 247
PciI ACATGT 1 cut(s) 243
PkrI GCNGC 6 cut(s) 7, 10, 145, 162, 317, 339
PmaCI CACGTG 1 cut(s) 149
PmlI CACGTG 1 cut(s) 149
Ppu21I YACGTR 1 cut(s) 149
PscI ACATGT 1 cut(s) 243
PspCI CACGTG 1 cut(s) 149
PspPI GGNCC 1 cut(s) 24
PstI CTGCAG 3 cut(s) 13, 145, 342
PstNI CAGNNNCTG 1 cut(s) 140
RsaI GTAC 2 cut(s) 222, 240
RsaNI GTAC 2 cut(s) 221, 239
RseI CAYNNNNRTG 1 cut(s) 32
SatI GCNGC 6 cut(s) 6, 9, 144, 161, 316, 338
Sau3AI GATC 1 cut(s) 153
Sau96I GGNCC 1 cut(s) 24
SetI ASST 3 cut(s) 151, 272, 324
SfaNI GCATC 1 cut(s) 289
SfcI CTRYAG 3 cut(s) 9, 141, 338
SmiMI CAYNNNNRTG 1 cut(s) 32
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
Sse9I AATT 2 cut(s) 49, 115
SsiI CCGC 3 cut(s) 6, 161, 205
SspMI CTAG 2 cut(s) 74, 236
StyI CCWWGG 1 cut(s) 181
TaaI ACNGT 1 cut(s) 303
TaiI ACGT 1 cut(s) 151
TasI AATT 2 cut(s) 49, 115
TatI WGTACW 1 cut(s) 238
TauI GCSGC 2 cut(s) 8, 163
TscAI CASTG 2 cut(s) 180, 353
TseI GCWGC 4 cut(s) 8, 143, 315, 337
TspDTI ATGAA 2 cut(s) 108, 215
TspGWI ACGGA 1 cut(s) 71
TspRI CASTG 2 cut(s) 180, 353
XagI CCTNNNNNAGG 1 cut(s) 93
XapI RAATTY 1 cut(s) 115
XceI RCATGY 1 cut(s) 247
XspI CTAG 2 cut(s) 74, 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.