Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007154.1

Orthogroup ID

OG0015232

Physical Location & Seq

Genomic Coordinates Forward (+)

28459 .. 30991

Gene Structure 2533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007154.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

atgtcatgtcttgcatgtgagggtgtcccggaggagcgaatcagggagattttggccgctttggatattcaccatattcatcatgttccaagggcggctaacaaggcggctcatactgttgcaggagttgtaacccgaggaaggagagtggggagttcatgtccaccaccagtcatttccatgctttgtaatcttgataatctttggcgtttttggcctgcaagatgttcttattgcttgaatatcagaagacgccaaggagtggtttataaagctgatctggttgtcattggaatctttgttggtgtagcccatggaattttgatagctgcactcatatttttcagaataaaggtgtggaataatcacaacaaagatggatttcctactgcatcaggtgtacttagatactcttacaagtatgcattaaatgctgtatcatttagggatgtacagaaagctacacagaacttcgcaaccatttggggacaaggggcttttggtccagtcaataaagcaacaatgcctgctggaaaggtagcagctgtgaaggtgcttgcttcaaattccaagcagggagagaaagagttccagacagaggaaaagactacatcagctacatttcgaataggtatctctgttaggaagactgcatcatcaaaatctagtgaacctcataggtatcactacaatgttttggatgtgagagtggactggcacattgacaaaggaaaggaagatggtttgtatattagctgtgtcgcctcatctgtgaatatgtgggctgtagtcatggatgcagggacaggtttcacatcccaactttatgaactattcacctgtttacttgcaggaggagtggataatggaacagtgggacaagaactaccatatcacttcacttgctggcgcaggcaatggcagtgccttggtggtaatgtccaaaggcctaccatatactcagcagttgtagcagatggggcattgtcatgtccagaaatgcaggttattctaatcaggttgttgagattgatttcctatatcccagcgaaggcatccatggaagatgggagaatggatatcgcatttacctcaactgctgcaacagaggattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

371

Amino Acids

40.93

Weight (kDa)

9.15

Isoelectric Point (pI)

47.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03930
rosa_chinensis	RchiOBHm_Chr2g0164291 RchiOBHm_Chr7g0187401
rosa_laevigata	RLG00000004785 RLG00000021451
rosa_multiflora	Rmu_co8439351.1_g000001 Rmu_sc0007154.1_g000010
rosa_rugosa	Rorug02G0507900
rosa_samantha	Rh2AG575800 Rh2CG557500 Rh2DG596300 Rh7DG088000 Rh7DG088100
rosa_wichuraiana	Rw2G047690 Rw2G047770 Rw7G007560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	270
Acc36I	ACCTGC	1 cut(s)	994
AccB7I	CCANNNNNTGG	1 cut(s)	262
AciI	CCGC	3 cut(s)	57, 95, 107
AcoI	YGGCCR	1 cut(s)	54
AcsI	RAATTY	2 cut(s)	318, 565
AcyI	GRCGYC	1 cut(s)	253
AfaI	GTAC	2 cut(s)	402, 453
AfiI	CCNNNNNNNGG	4 cut(s)	141, 262, 598, 1051
AgsI	TTSAA	2 cut(s)	241, 564
AluBI	AGCT	6 cut(s)	275, 329, 461, 545, 617, 756
AluI	AGCT	6 cut(s)	275, 329, 461, 545, 617, 756
Ama87I	CYCGRG	1 cut(s)	135
AoxI	GGCC	3 cut(s)	54, 215, 947
ApeKI	GCWGC	3 cut(s)	329, 542, 1100
ApoI	RAATTY	2 cut(s)	318, 565
Asp700I	GAANNNNTTC	1 cut(s)	587
AspLEI	GCGC	1 cut(s)	912
AspS9I	GGNCC	1 cut(s)	503
AsuC2I	CCSGG	1 cut(s)	29
AsuHPI	GGTGA	2 cut(s)	62, 829
AsuII	TTCGAA	1 cut(s)	625
AvaI	CYCGRG	1 cut(s)	135
AvaII	GGWCC	1 cut(s)	503
BbsI	GAAGAC	2 cut(s)	256, 653
BbvI	GCAGC	3 cut(s)	316, 554, 1087
BccI	CCATC	4 cut(s)	371, 734, 971, 1061
BcnI	CCSGG	1 cut(s)	29
BfaI	CTAG	1 cut(s)	666
BfmI	CTRYAG	1 cut(s)	786
BfuAI	ACCTGC	1 cut(s)	994
BisI	GCNGC	6 cut(s)	57, 96, 108, 330, 543, 1101
BlsI	GCNGC	6 cut(s)	58, 97, 109, 331, 544, 1102
Bme1390I	CCNGG	1 cut(s)	29
Bme18I	GGWCC	1 cut(s)	503
BmeT110I	CYCGRG	1 cut(s)	135
BmgT120I	GGNCC	1 cut(s)	503
BmrFI	CCNGG	1 cut(s)	29
BmsI	GCATC	4 cut(s)	401, 662, 787, 1064
BpiI	GAAGAC	2 cut(s)	256, 653
Bpu14I	TTCGAA	1 cut(s)	625
BpuMI	CCSGG	1 cut(s)	29
BsaHI	GRCGYC	1 cut(s)	253
BsaJI	CCNNGG	6 cut(s)	89, 136, 256, 313, 928, 1059
BsaXI	ACNNNNNCTCC	2 cut(s)	145, 175
Bsc4I	CCNNNNNNNGG	4 cut(s)	141, 262, 598, 1051
Bse1I	ACTGG	3 cut(s)	170, 506, 719
Bse3DI	GCAATG	1 cut(s)	923
BseDI	CCNNGG	6 cut(s)	89, 136, 256, 313, 928, 1059
BseGI	GGATG	5 cut(s)	454, 706, 802, 815, 1055
BseLI	CCNNNNNNNGG	4 cut(s)	141, 262, 598, 1051
BseMI	GCAATG	1 cut(s)	923
BseMII	CTCAG	1 cut(s)	975
BseNI	ACTGG	3 cut(s)	170, 506, 719
BseRI	GAGGAG	2 cut(s)	47, 870
BseXI	GCAGC	3 cut(s)	316, 554, 1087
BseYI	CCCAGC	1 cut(s)	1045
BsgI	GTGCAG	1 cut(s)	315
BshFI	GGCC	3 cut(s)	56, 217, 949
BsiHKCI	CYCGRG	1 cut(s)	135
BsiSI	CCGG	1 cut(s)	29
BslFI	GGGAC	4 cut(s)	11, 501, 817, 891
BslI	CCNNNNNNNGG	4 cut(s)	141, 262, 598, 1051
BsmFI	GGGAC	4 cut(s)	11, 501, 817, 891
BsnI	GGCC	3 cut(s)	56, 217, 949
BsoBI	CYCGRG	1 cut(s)	135
Bsp119I	TTCGAA	1 cut(s)	625
Bsp1407I	TGTACA	1 cut(s)	451
Bsp143I	GATC	1 cut(s)	277
Bsp19I	CCATGG	2 cut(s)	313, 1059
BspACI	CCGC	3 cut(s)	57, 95, 107
BspANI	GGCC	3 cut(s)	56, 217, 949
BspCNI	CTCAG	1 cut(s)	974
BspMI	ACCTGC	1 cut(s)	994
BspT104I	TTCGAA	1 cut(s)	625
BsrDI	GCAATG	1 cut(s)	923
BsrGI	TGTACA	1 cut(s)	451
BsrI	ACTGG	3 cut(s)	170, 506, 719
BssECI	CCNNGG	6 cut(s)	89, 136, 256, 313, 928, 1059
BssMI	GATC	1 cut(s)	277
BssNI	GRCGYC	1 cut(s)	253
BssT1I	CCWWGG	5 cut(s)	89, 256, 313, 928, 1059
Bst4CI	ACNGT	2 cut(s)	118, 874
BstACI	GRCGYC	1 cut(s)	253
BstAPI	GCANNNNNTGC	1 cut(s)	431
BstAUI	TGTACA	1 cut(s)	451
BstBI	TTCGAA	1 cut(s)	625
BstC8I	GCNNGC	5 cut(s)	219, 528, 558, 908, 914
BstDEI	CTNAG	2 cut(s)	404, 961
BstDSI	CCRYGG	2 cut(s)	313, 1059
BstF5I	GGATG	5 cut(s)	454, 706, 802, 815, 1055
BstHHI	GCGC	1 cut(s)	912
BstKTI	GATC	1 cut(s)	280
BstMBI	GATC	1 cut(s)	277
BstMWI	GCNNNNNNNGC	5 cut(s)	104, 214, 431, 971, 980
BstNSI	RCATGY	1 cut(s)	18
BstSCI	CCNGG	1 cut(s)	27
BstSFI	CTRYAG	1 cut(s)	786
BstV1I	GCAGC	3 cut(s)	316, 554, 1087
BstV2I	GAAGAC	2 cut(s)	256, 653
BsuRI	GGCC	3 cut(s)	56, 217, 949
BtgI	CCRYGG	2 cut(s)	313, 1059
BtsCI	GGATG	5 cut(s)	454, 706, 802, 815, 1055
BtsI	GCAGTG	1 cut(s)	929
BtsIMutI	CAGTG	2 cut(s)	879, 929
BveI	ACCTGC	1 cut(s)	994
Cac8I	GCNNGC	5 cut(s)	219, 528, 558, 908, 914
CfoI	GCGC	1 cut(s)	912
Cfr13I	GGNCC	1 cut(s)	503
CseI	GACGC	1 cut(s)	261
Csp6I	GTAC	2 cut(s)	401, 452
CviAII	CATG	9 cut(s)	6, 15, 83, 159, 181, 314, 793, 990, 1060
CviQI	GTAC	2 cut(s)	401, 452
DdeI	CTNAG	2 cut(s)	404, 961
DpnI	GATC	1 cut(s)	279
DpnII	GATC	1 cut(s)	277
EaeI	YGGCCR	1 cut(s)	54
Eco130I	CCWWGG	5 cut(s)	89, 256, 313, 928, 1059
Eco147I	AGGCCT	1 cut(s)	949
Eco32I	GATATC	1 cut(s)	1081
Eco47I	GGWCC	1 cut(s)	503
Eco88I	CYCGRG	1 cut(s)	135
EcoRV	GATATC	1 cut(s)	1081
EcoT14I	CCWWGG	5 cut(s)	89, 256, 313, 928, 1059
EcoT22I	ATGCAT	1 cut(s)	427
ErhI	CCWWGG	5 cut(s)	89, 256, 313, 928, 1059
FaeI	CATG	9 cut(s)	9, 18, 86, 162, 184, 317, 796, 993, 1063
FalI	AAGNNNNNCTT	2 cut(s)	214, 246
FaqI	GGGAC	4 cut(s)	11, 501, 817, 891
FatI	CATG	9 cut(s)	5, 14, 82, 158, 180, 313, 792, 989, 1059
Fnu4HI	GCNGC	6 cut(s)	57, 96, 108, 330, 543, 1101
FokI	GGATG	5 cut(s)	461, 713, 802, 809, 1042
Fsp4HI	GCNGC	6 cut(s)	57, 96, 108, 330, 543, 1101
FspBI	CTAG	1 cut(s)	666
GlaI	GCGC	1 cut(s)	911
GluI	GCNGC	6 cut(s)	57, 96, 108, 330, 543, 1101
GsaI	CCCAGC	1 cut(s)	1049
HaeIII	GGCC	3 cut(s)	56, 217, 949
HapII	CCGG	1 cut(s)	29
HgaI	GACGC	1 cut(s)	261
HhaI	GCGC	1 cut(s)	912
Hin1I	GRCGYC	1 cut(s)	253
Hin1II	CATG	9 cut(s)	9, 18, 86, 162, 184, 317, 796, 993, 1063
Hin6I	GCGC	1 cut(s)	910
HinP1I	GCGC	1 cut(s)	910
HinfI	GANTC	2 cut(s)	39, 294
HpaII	CCGG	1 cut(s)	29
HphI	GGTGA	2 cut(s)	62, 829
Hpy166II	GTNNAC	5 cut(s)	164, 401, 671, 712, 845
Hpy188I	TCNGA	2 cut(s)	248, 347
Hpy188III	TCNNGA	3 cut(s)	194, 592, 995
Hpy8I	GTNNAC	5 cut(s)	164, 401, 671, 712, 845
HpyAV	CCTTC	3 cut(s)	135, 544, 1045
HpyCH4III	ACNGT	2 cut(s)	118, 874
HpyF10VI	GCNNNNNNNGC	5 cut(s)	104, 214, 431, 971, 980
HpyF3I	CTNAG	2 cut(s)	404, 961
Hsp92I	GRCGYC	1 cut(s)	253
Hsp92II	CATG	9 cut(s)	9, 18, 86, 162, 184, 317, 796, 993, 1063
HspAI	GCGC	1 cut(s)	910
Kzo9I	GATC	1 cut(s)	277
LmnI	GCTCC	1 cut(s)	34
Lsp1109I	GCAGC	3 cut(s)	316, 554, 1087
LweI	GCATC	4 cut(s)	401, 662, 787, 1064
MaeI	CTAG	1 cut(s)	666
MaeIII	GTNAC	1 cut(s)	130
MalI	GATC	1 cut(s)	279
MboI	GATC	1 cut(s)	277
MboII	GAAGA	4 cut(s)	261, 658, 749, 1076
MluCI	AATT	2 cut(s)	318, 565
MnlI	CCTC	9 cut(s)	13, 25, 131, 592, 684, 775, 848, 1102, 1102
Mph1103I	ATGCAT	1 cut(s)	427
MroXI	GAANNNNTTC	1 cut(s)	587
MseI	TTAA	2 cut(s)	428, 1114
MslI	CAYNNNNRTG	3 cut(s)	179, 690, 988
MspA1I	CMGCKG	1 cut(s)	545
MspI	CCGG	1 cut(s)	29
MspR9I	CCNGG	1 cut(s)	29
MwoI	GCNNNNNNNGC	5 cut(s)	104, 214, 431, 971, 980
NciI	CCSGG	1 cut(s)	29
NcoI	CCATGG	2 cut(s)	313, 1059
NdeII	GATC	1 cut(s)	277
NlaIII	CATG	9 cut(s)	9, 18, 86, 162, 184, 317, 796, 993, 1063
NsiI	ATGCAT	1 cut(s)	427
NspI	RCATGY	1 cut(s)	18
NspV	TTCGAA	1 cut(s)	625
PceI	AGGCCT	1 cut(s)	949
PdmI	GAANNNNTTC	1 cut(s)	587
PfeI	GAWTC	2 cut(s)	39, 294
PflMI	CCANNNNNTGG	1 cut(s)	262
PfoI	TCCNGGA	1 cut(s)	27
PkrI	GCNGC	6 cut(s)	58, 97, 109, 331, 544, 1102
PsiI	TTATAA	1 cut(s)	270
PspFI	CCCAGC	1 cut(s)	1045
PspPI	GGNCC	1 cut(s)	503
PvuII	CAGCTG	1 cut(s)	545
RsaI	GTAC	2 cut(s)	402, 453
RsaNI	GTAC	2 cut(s)	401, 452
RseI	CAYNNNNRTG	3 cut(s)	179, 690, 988
SaqAI	TTAA	2 cut(s)	428, 1114
SatI	GCNGC	6 cut(s)	57, 96, 108, 330, 543, 1101
Sau3AI	GATC	1 cut(s)	277
Sau96I	GGNCC	1 cut(s)	503
ScrFI	CCNGG	1 cut(s)	29
SfaNI	GCATC	4 cut(s)	401, 662, 787, 1064
SfcI	CTRYAG	1 cut(s)	786
SfuI	TTCGAA	1 cut(s)	625
SinI	GGWCC	1 cut(s)	503
SmiMI	CAYNNNNRTG	3 cut(s)	179, 690, 988
Sse9I	AATT	2 cut(s)	318, 565
SseBI	AGGCCT	1 cut(s)	949
SsiI	CCGC	3 cut(s)	57, 95, 107
SspMI	CTAG	1 cut(s)	666
StuI	AGGCCT	1 cut(s)	949
StyD4I	CCNGG	1 cut(s)	27
StyI	CCWWGG	5 cut(s)	89, 256, 313, 928, 1059
TaaI	ACNGT	2 cut(s)	118, 874
TaqI	TCGA	1 cut(s)	625
TasI	AATT	2 cut(s)	318, 565
TatI	WGTACW	2 cut(s)	400, 451
TauI	GCSGC	3 cut(s)	59, 98, 110
TfiI	GAWTC	2 cut(s)	39, 294
Tru1I	TTAA	2 cut(s)	428, 1114
Tru9I	TTAA	2 cut(s)	428, 1114
TscAI	CASTG	2 cut(s)	879, 929
TseI	GCWGC	3 cut(s)	329, 542, 1100
TspDTI	ATGAA	3 cut(s)	68, 147, 843
TspRI	CASTG	2 cut(s)	879, 929
Van91I	CCANNNNNTGG	1 cut(s)	262
VpaK11BI	GGWCC	1 cut(s)	503
XapI	RAATTY	2 cut(s)	318, 565
XceI	RCATGY	1 cut(s)	18
XmnI	GAANNNNTTC	1 cut(s)	587
XspI	CTAG	1 cut(s)	666
Zsp2I	ATGCAT	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.