Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0015232

Physical Location & Seq

Genomic Coordinates Forward (+)

80585846 .. 80589763

Gene Structure 3918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG575800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGCAGGGACAGGTTTCACATCCCAACTTTATGAACTATTCACCTGTTTACTTGCAGGAGGAGTGGATAATGGAACAGTGGGACAAGAACTACCATATCACTTCACTTGCTGGCGCAGGCAATGGCAGTGCCTTGGTGGTAATGTCCAAAGGCCTACCATATACTCAGCAGTTGTACAAAGTCAGTGATATATTCCCTTTCAAATGGAATAATAAGAAATGGAAAGAAGGTTTCTCTGTTACCTCCATGACTACTGCAGGTAGCAGATGGGGCATTGTCATGTCCAGAAATGCAGGTTATTCTAATCAGGTTGTTGAGATTGATTTCCTATATCCAAGCGAAGGCATCCATGGAAGATGGGAGAATGGATATCGCATTTACCTCAACTGCTGCAACAGAGGATTAAGTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0006909 GO:0007154 GO:0007165 GO:0007166 GO:0007267 GO:0007346 GO:0008150 GO:0008152 GO:0008360 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010564 GO:0010604 GO:0015630 GO:0016055 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019222 GO:0019538 GO:0022603 GO:0022604 GO:0023052 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032879 GO:0032886 GO:0033043 GO:0035567 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051493 GO:0051716 GO:0051726 GO:0060069 GO:0060255 GO:0060341 GO:0061136 GO:0065007 GO:0065008 GO:0070507 GO:0071704 GO:0080090 GO:0098657 GO:0140096 GO:0198738 GO:1901564 GO:1901800 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1905114 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

137

Amino Acids

15.75

Weight (kDa)

8.53

Isoelectric Point (pI)

38.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7477	PF24289	10 - 127	3.4e-64	Domain of unknown function (DUF7477)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03930
rosa_chinensis	RchiOBHm_Chr2g0164291 RchiOBHm_Chr7g0187401
rosa_laevigata	RLG00000004785 RLG00000021451
rosa_multiflora	Rmu_co8439351.1_g000001 Rmu_sc0007154.1_g000010
rosa_rugosa	Rorug02G0507900
rosa_samantha	Rh2AG575800 Rh2CG557500 Rh2DG596300 Rh7DG088000 Rh7DG088100
rosa_wichuraiana	Rw2G047690 Rw2G047770 Rw7G007560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	248, 284
AfaI	GTAC	1 cut(s)	176
AfiI	CCNNNNNNNGG	1 cut(s)	341
AgsI	TTSAA	1 cut(s)	202
AoxI	GGCC	1 cut(s)	151
ApeKI	GCWGC	1 cut(s)	390
AspLEI	GCGC	1 cut(s)	116
AsuHPI	GGTGA	1 cut(s)	33
BbvI	GCAGC	1 cut(s)	377
BccI	CCATC	2 cut(s)	261, 351
BfmI	CTRYAG	1 cut(s)	255
BfuAI	ACCTGC	2 cut(s)	248, 284
BisI	GCNGC	1 cut(s)	391
BlsI	GCNGC	1 cut(s)	392
BmsI	GCATC	1 cut(s)	354
BsaJI	CCNNGG	2 cut(s)	132, 349
Bsc4I	CCNNNNNNNGG	1 cut(s)	341
Bse3DI	GCAATG	1 cut(s)	127
BseDI	CCNNGG	2 cut(s)	132, 349
BseGI	GGATG	2 cut(s)	19, 345
BseLI	CCNNNNNNNGG	1 cut(s)	341
BseMI	GCAATG	1 cut(s)	127
BseMII	CTCAG	1 cut(s)	179
BseRI	GAGGAG	1 cut(s)	74
BseXI	GCAGC	1 cut(s)	377
BshFI	GGCC	1 cut(s)	153
BslFI	GGGAC	2 cut(s)	21, 95
BslI	CCNNNNNNNGG	1 cut(s)	341
BsmFI	GGGAC	2 cut(s)	21, 95
BsnI	GGCC	1 cut(s)	153
Bsp1407I	TGTACA	1 cut(s)	174
Bsp19I	CCATGG	1 cut(s)	349
BspANI	GGCC	1 cut(s)	153
BspCNI	CTCAG	1 cut(s)	178
BspMAI	CTGCAG	1 cut(s)	259
BspMI	ACCTGC	2 cut(s)	248, 284
BsrDI	GCAATG	1 cut(s)	127
BsrGI	TGTACA	1 cut(s)	174
BssECI	CCNNGG	2 cut(s)	132, 349
BssT1I	CCWWGG	2 cut(s)	132, 349
Bst4CI	ACNGT	1 cut(s)	78
BstAUI	TGTACA	1 cut(s)	174
BstC8I	GCNNGC	2 cut(s)	112, 118
BstDEI	CTNAG	1 cut(s)	165
BstDSI	CCRYGG	1 cut(s)	349
BstF5I	GGATG	2 cut(s)	19, 345
BstHHI	GCGC	1 cut(s)	116
BstMWI	GCNNNNNNNGC	1 cut(s)	270
BstSFI	CTRYAG	1 cut(s)	255
BstV1I	GCAGC	1 cut(s)	377
BsuRI	GGCC	1 cut(s)	153
BtgI	CCRYGG	1 cut(s)	349
BtsCI	GGATG	2 cut(s)	19, 345
BtsI	GCAGTG	1 cut(s)	133
BtsIMutI	CAGTG	3 cut(s)	83, 133, 190
BveI	ACCTGC	2 cut(s)	248, 284
Cac8I	GCNNGC	2 cut(s)	112, 118
CfoI	GCGC	1 cut(s)	116
Csp6I	GTAC	1 cut(s)	175
CviAII	CATG	3 cut(s)	247, 280, 350
CviJI	RGCY	1 cut(s)	153
CviKI_1	RGCY	1 cut(s)	153
CviQI	GTAC	1 cut(s)	175
DdeI	CTNAG	1 cut(s)	165
Eco130I	CCWWGG	2 cut(s)	132, 349
Eco147I	AGGCCT	1 cut(s)	153
Eco32I	GATATC	1 cut(s)	371
EcoRV	GATATC	1 cut(s)	371
EcoT14I	CCWWGG	2 cut(s)	132, 349
ErhI	CCWWGG	2 cut(s)	132, 349
FaeI	CATG	3 cut(s)	250, 283, 353
FaiI	YATR	9 cut(s)	32, 96, 160, 162, 191, 248, 281, 331, 351
FaqI	GGGAC	2 cut(s)	21, 95
FatI	CATG	3 cut(s)	246, 279, 349
Fnu4HI	GCNGC	1 cut(s)	391
FokI	GGATG	2 cut(s)	6, 332
Fsp4HI	GCNGC	1 cut(s)	391
GlaI	GCGC	1 cut(s)	115
GluI	GCNGC	1 cut(s)	391
HaeIII	GGCC	1 cut(s)	153
HhaI	GCGC	1 cut(s)	116
Hin1II	CATG	3 cut(s)	250, 283, 353
Hin6I	GCGC	1 cut(s)	114
HinP1I	GCGC	1 cut(s)	114
HphI	GGTGA	1 cut(s)	33
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188III	TCNNGA	1 cut(s)	285
Hpy8I	GTNNAC	1 cut(s)	49
HpyAV	CCTTC	2 cut(s)	221, 335
HpyCH4III	ACNGT	1 cut(s)	78
HpyCH4V	TGCA	5 cut(s)	4, 55, 257, 293, 393
HpyF10VI	GCNNNNNNNGC	1 cut(s)	270
HpyF3I	CTNAG	1 cut(s)	165
Hsp92II	CATG	3 cut(s)	250, 283, 353
HspAI	GCGC	1 cut(s)	114
LpnPI	CCDG	8 cut(s)	41, 57, 96, 102, 243, 279, 293, 298
Lsp1109I	GCAGC	1 cut(s)	377
LweI	GCATC	1 cut(s)	354
MaeIII	GTNAC	1 cut(s)	238
MboII	GAAGA	1 cut(s)	366
MluCI	AATT	1 cut(s)	409
MnlI	CCTC	4 cut(s)	52, 253, 392, 392
MseI	TTAA	1 cut(s)	404
MslI	CAYNNNNRTG	1 cut(s)	278
MwoI	GCNNNNNNNGC	1 cut(s)	270
NcoI	CCATGG	1 cut(s)	349
NlaIII	CATG	3 cut(s)	250, 283, 353
PceI	AGGCCT	1 cut(s)	153
PkrI	GCNGC	1 cut(s)	392
PstI	CTGCAG	1 cut(s)	259
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
RseI	CAYNNNNRTG	1 cut(s)	278
SaqAI	TTAA	1 cut(s)	404
SatI	GCNGC	1 cut(s)	391
SetI	ASST	8 cut(s)	15, 46, 232, 245, 262, 298, 312, 384
SfaNI	GCATC	1 cut(s)	354
SfcI	CTRYAG	1 cut(s)	255
SmiMI	CAYNNNNRTG	1 cut(s)	278
Sse9I	AATT	1 cut(s)	409
SseBI	AGGCCT	1 cut(s)	153
StuI	AGGCCT	1 cut(s)	153
StyI	CCWWGG	2 cut(s)	132, 349
TaaI	ACNGT	1 cut(s)	78
TasI	AATT	1 cut(s)	409
TatI	WGTACW	1 cut(s)	174
Tru1I	TTAA	1 cut(s)	404
Tru9I	TTAA	1 cut(s)	404
TscAI	CASTG	3 cut(s)	83, 133, 190
TseI	GCWGC	1 cut(s)	390
TspDTI	ATGAA	1 cut(s)	47
TspRI	CASTG	3 cut(s)	83, 133, 190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.