RLG00000004785

Casein Kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0015232
Physical Location & Seq
Forward (+)
62263999 .. 62264310
312 bp
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UTR
Exon/CDS
Intron
RLM00000004785

Sequence Viewer

Length: 312 bp
ATGGCCACTGCAGGAAGTTTATGGGCCATTGTTAAGTCTCGGGGTTCTAATTATTCAGACCAAGTTGTTGAACTAGATTTCCGTTATCCTAGTGAAGGAATACATCAGCGATTGAATTCTGGATATCGTATAACAGCAACTGCAGCAACGTGTGATGAGGCCGCTTTTGTTCTTAGTGTGCCAAGGAAGAAGCCTCAAGATGAAACGCAGGAGACACTTCGTACTTCTGCTTTTCCAAGTACACATGTCAAGGAGAAGGGGGCGAAGAACCTTTATATTGCATCTATCTGTTATGGACGAACAGTATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

104

Amino Acids

11.34

Weight (kDa)

9.0

Isoelectric Point (pI)

22.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7477 PF24289 1 - 103 1.6e-53 Domain of unknown function (DUF7477)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 162
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 115
AfaI GTAC 2 cut(s) 223, 241
AfiI CCNNNNNNNGG 1 cut(s) 95
AflIII ACRYGT 2 cut(s) 149, 244
AgsI TTSAA 2 cut(s) 71, 115
AloI GAACNNNNNNTCC 2 cut(s) 63, 95
Alw26I GTCTC 2 cut(s) 42, 206
AlwNI CAGNNNCTG 1 cut(s) 140
Ama87I CYCGRG 1 cut(s) 39
AoxI GGCC 3 cut(s) 3, 24, 159
ApeKI GCWGC 1 cut(s) 143
ApoI RAATTY 1 cut(s) 115
AspS9I GGNCC 1 cut(s) 24
AvaI CYCGRG 1 cut(s) 39
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 1 cut(s) 155
BcoDI GTCTC 2 cut(s) 42, 206
BfaI CTAG 2 cut(s) 74, 90
BfmI CTRYAG 2 cut(s) 9, 141
BisI GCNGC 2 cut(s) 144, 162
BlsI GCNGC 2 cut(s) 145, 163
BmeT110I CYCGRG 1 cut(s) 39
BmgT120I GGNCC 1 cut(s) 24
BmsI GCATC 1 cut(s) 290
BpuEI CTTGAG 1 cut(s) 180
BsaJI CCNNGG 1 cut(s) 182
Bsc4I CCNNNNNNNGG 1 cut(s) 95
BseDI CCNNGG 1 cut(s) 182
BseLI CCNNNNNNNGG 1 cut(s) 95
BseXI GCAGC 1 cut(s) 155
BshFI GGCC 3 cut(s) 5, 26, 161
BsiHKCI CYCGRG 1 cut(s) 39
BslI CCNNNNNNNGG 1 cut(s) 95
BsmAI GTCTC 2 cut(s) 42, 206
BsnI GGCC 3 cut(s) 5, 26, 161
BsoBI CYCGRG 1 cut(s) 39
BspACI CCGC 1 cut(s) 162
BspANI GGCC 3 cut(s) 5, 26, 161
BspMAI CTGCAG 2 cut(s) 13, 145
BssECI CCNNGG 1 cut(s) 182
BssT1I CCWWGG 1 cut(s) 182
Bst4CI ACNGT 1 cut(s) 304
BstDEI CTNAG 1 cut(s) 173
BstENI CCTNNNNNAGG 1 cut(s) 93
BstMAI GTCTC 2 cut(s) 42, 206
BstMWI GCNNNNNNNGC 1 cut(s) 143
BstNSI RCATGY 1 cut(s) 248
BstSFI CTRYAG 2 cut(s) 9, 141
BstV1I GCAGC 1 cut(s) 155
BsuRI GGCC 3 cut(s) 5, 26, 161
BtsI GCAGTG 1 cut(s) 6
BtsIMutI CAGTG 1 cut(s) 6
CaiI CAGNNNCTG 1 cut(s) 140
Cfr13I GGNCC 1 cut(s) 24
Csp6I GTAC 2 cut(s) 222, 240
CviAII CATG 1 cut(s) 245
CviJI RGCY 4 cut(s) 5, 26, 161, 193
CviKI_1 RGCY 4 cut(s) 5, 26, 161, 193
CviQI GTAC 2 cut(s) 222, 240
DdeI CTNAG 1 cut(s) 173
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 182
Eco32I GATATC 1 cut(s) 125
Eco88I CYCGRG 1 cut(s) 39
EcoNI CCTNNNNNAGG 1 cut(s) 93
EcoRI GAATTC 1 cut(s) 115
EcoRV GATATC 1 cut(s) 125
EcoT14I CCWWGG 1 cut(s) 182
ErhI CCWWGG 1 cut(s) 182
FaeI CATG 1 cut(s) 248
FaiI YATR 6 cut(s) 22, 131, 246, 276, 294, 310
FatI CATG 1 cut(s) 244
Fnu4HI GCNGC 2 cut(s) 144, 162
Fsp4HI GCNGC 2 cut(s) 144, 162
FspBI CTAG 2 cut(s) 74, 90
GluI GCNGC 2 cut(s) 144, 162
HaeIII GGCC 3 cut(s) 5, 26, 161
Hin1II CATG 1 cut(s) 248
Hpy166II GTNNAC 1 cut(s) 242
Hpy188I TCNGA 1 cut(s) 58
Hpy188III TCNNGA 2 cut(s) 120, 197
Hpy8I GTNNAC 1 cut(s) 242
HpyAV CCTTC 2 cut(s) 89, 250
HpyCH4III ACNGT 1 cut(s) 304
HpyCH4IV ACGT 1 cut(s) 149
HpyCH4V TGCA 3 cut(s) 11, 143, 281
HpyF10VI GCNNNNNNNGC 1 cut(s) 143
HpyF3I CTNAG 1 cut(s) 173
HpySE526I ACGT 1 cut(s) 149
Hsp92II CATG 1 cut(s) 248
LpnPI CCDG 2 cut(s) 105, 194
Lsp1109I GCAGC 1 cut(s) 155
LweI GCATC 1 cut(s) 290
MaeI CTAG 2 cut(s) 74, 90
MaeII ACGT 1 cut(s) 149
MboII GAAGA 2 cut(s) 199, 277
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 49, 115
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 2 cut(s) 151, 204
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 33
Msp20I TGGCCA 1 cut(s) 5
MwoI GCNNNNNNNGC 1 cut(s) 143
NlaIII CATG 1 cut(s) 248
NspI RCATGY 1 cut(s) 248
PciI ACATGT 1 cut(s) 244
PkrI GCNGC 2 cut(s) 145, 163
PscI ACATGT 1 cut(s) 244
PspPI GGNCC 1 cut(s) 24
PstI CTGCAG 2 cut(s) 13, 145
PstNI CAGNNNCTG 1 cut(s) 140
RsaI GTAC 2 cut(s) 223, 241
RsaNI GTAC 2 cut(s) 222, 240
SaqAI TTAA 1 cut(s) 33
SatI GCNGC 2 cut(s) 144, 162
Sau96I GGNCC 1 cut(s) 24
SetI ASST 2 cut(s) 152, 273
SfaNI GCATC 1 cut(s) 290
SfcI CTRYAG 2 cut(s) 9, 141
SmlI CTYRAG 1 cut(s) 195
SmoI CTYRAG 1 cut(s) 195
Sse9I AATT 2 cut(s) 49, 115
SsiI CCGC 1 cut(s) 162
SspMI CTAG 2 cut(s) 74, 90
StyI CCWWGG 1 cut(s) 182
TaaI ACNGT 1 cut(s) 304
TaiI ACGT 1 cut(s) 152
TasI AATT 2 cut(s) 49, 115
TatI WGTACW 1 cut(s) 239
TauI GCSGC 1 cut(s) 164
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TscAI CASTG 1 cut(s) 13
TseI GCWGC 1 cut(s) 143
TspDTI ATGAA 1 cut(s) 216
TspGWI ACGGA 1 cut(s) 71
TspRI CASTG 1 cut(s) 13
XagI CCTNNNNNAGG 1 cut(s) 93
XapI RAATTY 1 cut(s) 115
XceI RCATGY 1 cut(s) 248
XspI CTAG 2 cut(s) 74, 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.