Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009319

Physical Location & Seq

Genomic Coordinates Reverse (-)

1122948 .. 1127581

Gene Structure 4634 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G04260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2733 bp

ATGTCACTCTTGTTCCTCAATCCTCCGTTTCCCTCCAATTCAATCCACCCAATTCCTCGTCGTGCCGCCGGAATATCCTCCATTCGATGCTCAATTTCTGCACCGGAGAAGAAACCGAGGAGGAGGAGGAAGCAGAAGCGCGGCGACGGAGCTGAGAATGACGACTCTTTGTCTTTCGGAAGTGGTGAAGCTGTCTCCGCTCTGGAGAGGAGTCTCCGCCTCACTTTTATGGACGAGCTTATGGAACGAGCTAGAAATCGAGATACTTCAGGTGTTTCTGAGGTTATCTATGACATGATTGCTGCTGGGCTTAGCCCTGGACCTCGTTCTTTCCATGGTTTGGTTGTAGCTCACGCGCTTAACGGCGACGAACAAGGCGCGATGCACTCGCTGAGAAAGGAGCTAGGTGCAGGCCAACGTCCGCTTCCTGAGACTATGATTGCTTTGGTTCGTCTCTCTGGTTCGAAAGGGAATGCTACGAGAGGCCTAGAAATCCTCGCCGCTATGGAAAAGCTTAAGTATGACATTCGTCAAGCTTGGCTCATTCTTGTTGAGGAGCTCATGAGGATCAATCACTTGGAAGATGCGAATAAAGTTTTCTTGAAGGGTGCAAGAGGTGGGATGAGAGCAACAGATCAGCTTTATGATTTGATGATTGAAGAAGATTGCAAAGCTGGAGATCATTCTAATGCCTTAGACATCTCTTACGAAATGGAGGCAGCTGGTAGAATGGCCACAACATTTCATTTCAACTGTCTTCTTAGTGTGCAGGCTACATGTGGGATTCCCGAGGTAGCTTATGCTACATTCGAAAATATGGAGTACGGTGAAGTATTTATGAAGCCTGACACTGAGACATATAACTGGGTGATTCAAGCCTACACTAGAGCCGAGTCATATGATAGGGTTCAGGATGTTGCTGAATTACTTGGAATGATGGTTGAGGACCACAAACGTGTGCAGCCAAATGTGAAGACTTATGCGCTCTTAGTTGAGTGCTTCACCAAATATTGTGTCGTGAAGGAAGCGATTAGACATTTTCGTGCTCTTAAAAACTTTGAAGGAGGAACAGTAATTTTACACAATGCAGGGAATTTTGAGGATCCTCTCTCTTTGTATCTCAGGGCTTTGTGTCGAGAAGGAAGAATTGTTGAGCTTATTGATGCTTTAGATGCAATGCGCAAAGATAACCAACCTATACCTCCAAGAGCCATGATTATGAGCAGAAAGTATCGAACACTAGTCAGCTCATGGATTGAACCATTGCAAGAAGAAGCTGAACTTGGCTATGAGATTGATTATTTAGCGAGGTACATAGAGGAAGGGGGACTTACTGGTGAACGCAAGCGTTGGGTACCTCGAAGAGGGAAAACTCCTTTAGATCCCGATGCTTCTGGTTTTATATACTCAAACCCTATTGAAACATCCTTTAAACAGAGATGCCTTGAAGATTGGAAAGTTCACCATAGGAAGCTCTTGAGAACCTTACAGAGTGAAGGTCTTCCAGTTCTAGGAGATGCATCAGAATCTGATTACATGAGAGTGGTGGAGAGATTACGGAACATAATAAAAGGTCCTGCACTGAATCTTTTGAAGCCGAAAGCAGCAAGCAAGATGGTTGTATCAGAGTTAAAGGAAGAACTCGAAGCTCAGGGTTTGCCAATTGATGGAACAAGAAATGTGCTTTACCAGCGTGTCCAAAAAGCAAGGAGAATAAACAAATCTCGAGGTCGACCTCTTTGGGTTCCTCCAATTGAAGAAGAAGAGGAGGAGGTCGATGAAGAAGTAGACGATTTAATATGTCGAATCAAGCTACATGAAGGAGACACAGAGTTCTGGAAACGTCGGTTTCTTGGAGAAGGCTTGATTGAAACTTCAGTTGAATCCAAGGAAACGACTGAATCAGTGGTTACAGGTGAATCGGAGAAAGCGATTGAAGATATTTCAAAAGAAGCTGACAATGAGGAGGATGATGATGAGGAGGAACAAGAAGGAGATGAGGATGATGATGAAAATGAAGAGGAAGAAGTGGTTGTTCCAGAAACTGAGAATCGAGCAGAAGGAGAAGATTTAGTGAAGAATAAGGCAGCTGACGCGAAGAAGCATCTTCAAATGATTGGAGTCCAACTCTTGAAAGAATCCGATGAAGCAAACAGAACAAAGAAACGTGGGAAGAGGGCATCTCGTATGACACTTGAGGATGATGCAGATGAGGATTGGTTCCCTGAGGAACCATTTGAAGCATTCAAAGAAATGAGGGAAAGAAAAGTGTTCGATGTGGCTGACATGTATACAATAGCAGACGTTTGGGGTTGGACATGGGAGAAGGATTTTAAGAACAAAACTCCAAGGAAATGGTCACAAGAGTGGGAAGTCGAGTTGGCAATTGTGCTCATGACAAAGGTGATTGAATTGGGTGGAATTCCAACGATTGGTGATTGTGCAGTGATATTACGAGCTGCTTTAAGAGCTCCCATGCCTTCAGCCTTCTTGAAGATCTTGCAGACGACACACAGTCTTGGCTACTCATTTGGCAGCCCGTTGTACGATGAGATCATCACATTGTGTTTGGACCTTGGAGAACTTGATGCAGCCATCGCCATAGTTGCAGATATGGAAACCACAGGGATCACTGTCCCTGATCAAACCCTTGACAAGGTCATATCTGCTAGACAATCTAATGAGAGTCCGCGGTCTGAGCCTGAAGAGCCAGCATCAACAGTAAGCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAP

Protein Analysis

910

Amino Acids

102.92

Weight (kDa)

4.95

Isoelectric Point (pI)

51.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAP	PF02037	537 - 570	1.2e-08	SAP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04260
fragaria_vesca	FvH4_6g01350 FvH4_6g01350 FvH4_6g01350 FvH4_6g01352
malus_domestica	MD04G1234900.v1.1
prunus_persica	Prupe.6G354700_v2.0.a1 Prupe.6G354700_v2.0.a1
pyrus_communis	pycom04g20830 pycom04g20860
rosa_chinensis	RchiOBHm_Chr3g0448921
rosa_laevigata	RLG00000025866
rosa_multiflora	Rmu_sc0003116.1_g000017
rosa_roxburghii	Rroxscaffold_6G00427100
rosa_rugosa	Rorug02G0617100
rosa_samantha	Rh3AG015500 Rh3BG015500 Rh3BG015600 Rh3CG014400 Rh3CG014600 Rh3DG015900
rosa_wichuraiana	Rw3G001150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1181
Acc65I	GGTACC	1 cut(s)	1354
AccB1I	GGYRCC	1 cut(s)	1354
AccB7I	CCANNNNNTGG	3 cut(s)	340, 1667, 2432
AccBSI	CCGCTC	1 cut(s)	200
AccI	GTMKAC	3 cut(s)	1732, 1788, 2291
AccII	CGCG	5 cut(s)	141, 356, 380, 2096, 2692
AciI	CCGC	8 cut(s)	66, 141, 198, 217, 422, 501, 2690, 2692
AclWI	GGATC	5 cut(s)	575, 1097, 1110, 1376, 2636
AcoI	YGGCCR	1 cut(s)	732
AcsI	RAATTY	2 cut(s)	1093, 2421
AcuI	CTGAAG	4 cut(s)	252, 1860, 2466, 2724
AdeI	CACNNNGTG	1 cut(s)	2565
AfaI	GTAC	4 cut(s)	824, 1313, 1356, 2546
AfiI	CCNNNNNNNGG	6 cut(s)	340, 1364, 1511, 1667, 2432, 2656
AflII	CTTAAG	1 cut(s)	515
AflIII	ACRYGT	3 cut(s)	776, 955, 2286
AhdI	GACNNNNNGTC	2 cut(s)	169, 2514
AhlI	ACTAGT	1 cut(s)	1240
AjnI	CCWGG	1 cut(s)	316
AjuI	GAANNNNNNNTTGG	4 cut(s)	408, 440, 1266, 1298
AleI	CACNNNNGTG	2 cut(s)	954, 2365
Alw21I	GWGCWC	4 cut(s)	561, 1048, 2394, 2473
Alw26I	GTCTC	6 cut(s)	199, 218, 425, 458, 848, 1818
AlwI	GGATC	5 cut(s)	575, 1097, 1110, 1376, 2636
AlwNI	CAGNNNCTG	2 cut(s)	1529, 2045
Ama87I	CYCGRG	2 cut(s)	788, 1725
AoxI	GGCC	3 cut(s)	412, 484, 732
ApeKI	GCWGC	8 cut(s)	302, 719, 961, 1604, 2087, 2459, 2535, 2591
ApoI	RAATTY	2 cut(s)	1093, 2421
ArsI	GACNNNNNNTTYG	2 cut(s)	999, 1031
Asp700I	GAANNNNTTC	1 cut(s)	1500
Asp718I	GGTACC	1 cut(s)	1354
AspLEI	GCGC	5 cut(s)	141, 358, 380, 985, 1182
AspS9I	GGNCC	4 cut(s)	320, 946, 1574, 2572
AsuHPI	GGTGA	9 cut(s)	197, 839, 880, 994, 1349, 1454, 1928, 2416, 2447
AsuII	TTCGAA	2 cut(s)	464, 810
AvaI	CYCGRG	2 cut(s)	788, 1725
AvaII	GGWCC	4 cut(s)	320, 946, 1574, 2572
AxyI	CCTNAGG	1 cut(s)	2226
BalI	TGGCCA	1 cut(s)	734
BamHI	GGATCC	1 cut(s)	1102
BanI	GGYRCC	1 cut(s)	1354
BanII	GRGCYC	2 cut(s)	561, 2473
BbsI	GAAGAC	3 cut(s)	749, 980, 1493
Bbv12I	GWGCWC	4 cut(s)	561, 1048, 2394, 2473
BbvI	GCAGC	8 cut(s)	289, 731, 973, 1616, 2099, 2446, 2547, 2603
BccI	CCATC	4 cut(s)	931, 1609, 1661, 2603
BceAI	ACGGC	1 cut(s)	379
BciT130I	CCWGG	1 cut(s)	318
BclI	TGATCA	1 cut(s)	2641
BcoDI	GTCTC	6 cut(s)	199, 218, 425, 458, 848, 1818
BcuI	ACTAGT	1 cut(s)	1240
BfaI	CTAG	7 cut(s)	252, 404, 488, 885, 1241, 1511, 2670
BfrI	CTTAAG	1 cut(s)	515
BglII	AGATCT	1 cut(s)	2496
BlpI	GCTNAGC	1 cut(s)	311
Bme1390I	CCNGG	1 cut(s)	318
Bme18I	GGWCC	4 cut(s)	320, 946, 1574, 2572
BmeRI	GACNNNNNGTC	2 cut(s)	169, 2514
BmeT110I	CYCGRG	2 cut(s)	788, 1725
BmgT120I	GGNCC	4 cut(s)	320, 946, 1574, 2572
BmiI	GGNNCC	5 cut(s)	1104, 1356, 1746, 2222, 2232
BmrFI	CCNGG	1 cut(s)	318
BmrI	ACTGGG	1 cut(s)	874
BmuI	ACTGGG	1 cut(s)	874
BoxI	GACNNNNGTC	1 cut(s)	528
BpiI	GAAGAC	3 cut(s)	749, 980, 1493
BplI	GAGNNNNNCTC	4 cut(s)	2112, 2144, 2167, 2199
BpmI	CTGGAG	2 cut(s)	224, 696
Bpu10I	CCTNAGC	1 cut(s)	1650
Bpu1102I	GCTNAGC	1 cut(s)	311
Bpu14I	TTCGAA	2 cut(s)	464, 810
BpuEI	CTTGAG	2 cut(s)	1498, 2216
BsaJI	CCNNGG	8 cut(s)	116, 316, 334, 789, 1887, 2348, 2575, 2690
BsaWI	WCCGGW	1 cut(s)	103
BsaXI	ACNNNNNCTCC	2 cut(s)	1056, 1086
Bsc4I	CCNNNNNNNGG	6 cut(s)	340, 1364, 1511, 1667, 2432, 2656
Bse1I	ACTGG	3 cut(s)	869, 1339, 1505
Bse21I	CCTNAGG	1 cut(s)	2226
Bse3DI	GCAATG	2 cut(s)	1182, 1262
BseBI	CCWGG	1 cut(s)	318
BseDI	CCNNGG	8 cut(s)	116, 316, 334, 789, 1887, 2348, 2575, 2690
BseGI	GGATG	6 cut(s)	627, 919, 1424, 1975, 2008, 2206
BseLI	CCNNNNNNNGG	6 cut(s)	340, 1364, 1511, 1667, 2432, 2656
BseMI	GCAATG	2 cut(s)	1182, 1262
BseNI	ACTGG	3 cut(s)	869, 1339, 1505
BseRI	GAGGAG	9 cut(s)	133, 136, 139, 223, 569, 1781, 1784, 1979, 1994
BseXI	GCAGC	8 cut(s)	289, 731, 973, 1616, 2099, 2446, 2547, 2603
BseYI	CCCAGC	1 cut(s)	305
BsgI	GTGCAG	6 cut(s)	84, 429, 788, 980, 1563, 2463
Bsh1236I	CGCG	5 cut(s)	141, 356, 380, 2096, 2692
BshFI	GGCC	3 cut(s)	414, 486, 734
BshNI	GGYRCC	1 cut(s)	1354
BsiHKAI	GWGCWC	4 cut(s)	561, 1048, 2394, 2473
BsiHKCI	CYCGRG	2 cut(s)	788, 1725
BsiSI	CCGG	2 cut(s)	69, 104
BslFI	GGGAC	2 cut(s)	1341, 2621
BslI	CCNNNNNNNGG	6 cut(s)	340, 1364, 1511, 1667, 2432, 2656
BsmAI	GTCTC	6 cut(s)	199, 218, 425, 458, 848, 1818
BsmBI	CGTCTC	1 cut(s)	458
BsmFI	GGGAC	2 cut(s)	1341, 2621
BsmI	GAATGC	2 cut(s)	478, 2243
BsnI	GGCC	3 cut(s)	414, 486, 734
BsoBI	CYCGRG	2 cut(s)	788, 1725
Bsp119I	TTCGAA	2 cut(s)	464, 810
Bsp1286I	GDGCHC	4 cut(s)	561, 1048, 2394, 2473
Bsp143I	GATC	9 cut(s)	567, 634, 679, 1102, 1381, 2496, 2553, 2628, 2641
Bsp1720I	GCTNAGC	1 cut(s)	311
Bsp19I	CCATGG	1 cut(s)	334
BspACI	CCGC	8 cut(s)	66, 141, 198, 217, 422, 501, 2690, 2692
BspANI	GGCC	3 cut(s)	414, 486, 734
BspFNI	CGCG	5 cut(s)	141, 356, 380, 2096, 2692
BspHI	TCATGA	2 cut(s)	561, 2394
BspLI	GGNNCC	5 cut(s)	1104, 1356, 1746, 2222, 2232
BspPI	GGATC	5 cut(s)	575, 1097, 1110, 1376, 2636
BspQI	GCTCTTC	1 cut(s)	2700
BspT104I	TTCGAA	2 cut(s)	464, 810
BspT107I	GGYRCC	1 cut(s)	1354
BspTI	CTTAAG	1 cut(s)	515
BsrBI	CCGCTC	1 cut(s)	200
BsrDI	GCAATG	2 cut(s)	1182, 1262
BsrI	ACTGG	3 cut(s)	869, 1339, 1505
BssECI	CCNNGG	8 cut(s)	116, 316, 334, 789, 1887, 2348, 2575, 2690
BssMI	GATC	9 cut(s)	567, 634, 679, 1102, 1381, 2496, 2553, 2628, 2641
BssNAI	GTATAC	1 cut(s)	2292
BssT1I	CCWWGG	4 cut(s)	334, 1887, 2348, 2575
Bst1107I	GTATAC	1 cut(s)	2292
Bst2UI	CCWGG	1 cut(s)	318
Bst4CI	ACNGT	6 cut(s)	755, 827, 1072, 2516, 2635, 2722
Bst6I	CTCTTC	5 cut(s)	1357, 1758, 2013, 2168, 2700
BstAFI	CTTAAG	1 cut(s)	515
BstBI	TTCGAA	2 cut(s)	464, 810
BstC8I	GCNNGC	5 cut(s)	412, 771, 1346, 1609, 2712
BstDSI	CCRYGG	2 cut(s)	334, 2690
BstENI	CCTNNNNNAGG	2 cut(s)	1362, 2654
BstF5I	GGATG	6 cut(s)	627, 919, 1424, 1975, 2008, 2206
BstFNI	CGCG	5 cut(s)	141, 356, 380, 2096, 2692
BstHHI	GCGC	5 cut(s)	141, 358, 380, 985, 1182
BstKTI	GATC	9 cut(s)	570, 637, 682, 1105, 1384, 2499, 2556, 2631, 2644
BstMAI	GTCTC	6 cut(s)	199, 218, 425, 458, 848, 1818
BstMBI	GATC	9 cut(s)	567, 634, 679, 1102, 1381, 2496, 2553, 2628, 2641
BstMWI	GCNNNNNNNGC	9 cut(s)	197, 1172, 1690, 2093, 2468, 2597, 2606, 2698, 2707
BstNI	CCWGG	1 cut(s)	318
BstNSI	RCATGY	2 cut(s)	780, 2290
BstPAI	GACNNNNGTC	1 cut(s)	528
BstSCI	CCNGG	1 cut(s)	316
BstUI	CGCG	5 cut(s)	141, 356, 380, 2096, 2692
BstV1I	GCAGC	8 cut(s)	289, 731, 973, 1616, 2099, 2446, 2547, 2603
BstV2I	GAAGAC	3 cut(s)	749, 980, 1493
BstX2I	RGATCY	3 cut(s)	1102, 1381, 2496
BstXI	CCANNNNNNTGG	1 cut(s)	2355
BstYI	RGATCY	3 cut(s)	1102, 1381, 2496
BstZ17I	GTATAC	1 cut(s)	2292
Bsu36I	CCTNAGG	1 cut(s)	2226
BsuRI	GGCC	3 cut(s)	414, 486, 734
BtgI	CCRYGG	2 cut(s)	334, 2690
BtgZI	GCGATG	2 cut(s)	395, 2581
BtsCI	GGATG	6 cut(s)	627, 919, 1424, 1975, 2008, 2206
BtsI	GCAGTG	1 cut(s)	2451
BtsIMutI	CAGTG	5 cut(s)	849, 1580, 1911, 2451, 2631
Cac8I	GCNNGC	5 cut(s)	412, 771, 1346, 1609, 2712
CaiI	CAGNNNCTG	2 cut(s)	1529, 2045
CciI	TCATGA	2 cut(s)	561, 2394
CfoI	GCGC	5 cut(s)	141, 358, 380, 985, 1182
Cfr13I	GGNCC	4 cut(s)	320, 946, 1574, 2572
Cfr42I	CCGCGG	1 cut(s)	2693
CseI	GACGC	1 cut(s)	2102
Csp6I	GTAC	4 cut(s)	823, 1312, 1355, 2545
CviQI	GTAC	4 cut(s)	823, 1312, 1355, 2545
DpnI	GATC	9 cut(s)	569, 636, 681, 1104, 1383, 2498, 2555, 2630, 2643
DpnII	GATC	9 cut(s)	567, 634, 679, 1102, 1381, 2496, 2553, 2628, 2641
DraI	TTTAAA	1 cut(s)	1432
DraIII	CACNNNGTG	1 cut(s)	2565
DriI	GACNNNNNGTC	2 cut(s)	169, 2514
EaeI	YGGCCR	1 cut(s)	732
Eam1104I	CTCTTC	5 cut(s)	1357, 1758, 2013, 2168, 2700
Eam1105I	GACNNNNNGTC	2 cut(s)	169, 2514
EarI	CTCTTC	5 cut(s)	1357, 1758, 2013, 2168, 2700
EciI	GGCGGA	1 cut(s)	206
Ecl136II	GAGCTC	2 cut(s)	559, 2471
Eco130I	CCWWGG	4 cut(s)	334, 1887, 2348, 2575
Eco147I	AGGCCT	1 cut(s)	486
Eco24I	GRGCYC	2 cut(s)	561, 2473
Eco47I	GGWCC	4 cut(s)	320, 946, 1574, 2572
Eco53kI	GAGCTC	2 cut(s)	559, 2471
Eco57I	CTGAAG	4 cut(s)	252, 1860, 2466, 2724
Eco81I	CCTNAGG	1 cut(s)	2226
Eco88I	CYCGRG	2 cut(s)	788, 1725
EcoICRI	GAGCTC	2 cut(s)	559, 2471
EcoNI	CCTNNNNNAGG	2 cut(s)	1362, 2654
EcoO109I	RGGNCCY	1 cut(s)	1574
EcoRI	GAATTC	1 cut(s)	2421
EcoRII	CCWGG	1 cut(s)	316
EcoT14I	CCWWGG	4 cut(s)	334, 1887, 2348, 2575
EcoT22I	ATGCAT	1 cut(s)	1522
EcoT38I	GRGCYC	2 cut(s)	561, 2473
ErhI	CCWWGG	4 cut(s)	334, 1887, 2348, 2575
Esp3I	CGTCTC	1 cut(s)	458
FalI	AAGNNNNNCTT	4 cut(s)	1266, 1298, 1314, 1346
FaqI	GGGAC	2 cut(s)	1341, 2621
FauNDI	CATATG	1 cut(s)	898
FbaI	TGATCA	1 cut(s)	2641
FblI	GTMKAC	3 cut(s)	1732, 1788, 2291
FokI	GGATG	6 cut(s)	634, 926, 1411, 1982, 2015, 2213
FriOI	GRGCYC	2 cut(s)	561, 2473
FspBI	CTAG	7 cut(s)	252, 404, 488, 885, 1241, 1511, 2670
FspI	TGCGCA	1 cut(s)	1181
GlaI	GCGC	5 cut(s)	140, 357, 379, 984, 1181
GsaI	CCCAGC	1 cut(s)	309
GsuI	CTGGAG	2 cut(s)	224, 696
HaeIII	GGCC	3 cut(s)	414, 486, 734
HapII	CCGG	2 cut(s)	69, 104
HgaI	GACGC	1 cut(s)	2102
HhaI	GCGC	5 cut(s)	141, 358, 380, 985, 1182
Hin6I	GCGC	5 cut(s)	139, 356, 378, 983, 1180
HinP1I	GCGC	5 cut(s)	139, 356, 378, 983, 1180
HincII	GTYRAC	1 cut(s)	1733
HindII	GTYRAC	1 cut(s)	1733
HindIII	AAGCTT	2 cut(s)	512, 534
HpaII	CCGG	2 cut(s)	69, 104
HphI	GGTGA	9 cut(s)	197, 839, 880, 994, 1349, 1454, 1928, 2416, 2447
Hpy166II	GTNNAC	5 cut(s)	1340, 1462, 1733, 1789, 2292
Hpy188I	TCNGA	8 cut(s)	179, 280, 1525, 1531, 1627, 1924, 2143, 2698
Hpy8I	GTNNAC	5 cut(s)	1340, 1462, 1733, 1789, 2292
Hpy99I	CGWCG	4 cut(s)	63, 149, 371, 1848
HpyCH4III	ACNGT	6 cut(s)	755, 827, 1072, 2516, 2635, 2722
HpyCH4IV	ACGT	5 cut(s)	418, 955, 1843, 2167, 2304
HpyF10VI	GCNNNNNNNGC	9 cut(s)	197, 1172, 1690, 2093, 2468, 2597, 2606, 2698, 2707
HpySE526I	ACGT	5 cut(s)	418, 955, 1843, 2167, 2304
HspAI	GCGC	5 cut(s)	139, 356, 378, 983, 1180
KpnI	GGTACC	1 cut(s)	1358
Ksp22I	TGATCA	1 cut(s)	2641
KspI	CCGCGG	1 cut(s)	2693
Kzo9I	GATC	9 cut(s)	567, 634, 679, 1102, 1381, 2496, 2553, 2628, 2641
LguI	GCTCTTC	1 cut(s)	2700
LmnI	GCTCC	4 cut(s)	149, 400, 556, 2476
Lsp1109I	GCAGC	8 cut(s)	289, 731, 973, 1616, 2099, 2446, 2547, 2603
MaeI	CTAG	7 cut(s)	252, 404, 488, 885, 1241, 1511, 2670
MaeII	ACGT	5 cut(s)	418, 955, 1843, 2167, 2304
MaeIII	GTNAC	3 cut(s)	3, 1909, 2358
MalI	GATC	9 cut(s)	569, 636, 681, 1104, 1383, 2498, 2555, 2630, 2643
MbiI	CCGCTC	1 cut(s)	200
MboI	GATC	9 cut(s)	567, 634, 679, 1102, 1381, 2496, 2553, 2628, 2641
MfeI	CAATTG	3 cut(s)	1662, 1752, 2385
MflI	RGATCY	3 cut(s)	1102, 1381, 2496
MhlI	GDGCHC	4 cut(s)	561, 1048, 2394, 2473
MlsI	TGGCCA	1 cut(s)	734
MluNI	TGGCCA	1 cut(s)	734
MlyI	GAGTC	5 cut(s)	158, 220, 902, 2130, 2695
MmeI	TCCRAC	3 cut(s)	2149, 2294, 2450
Mox20I	TGGCCA	1 cut(s)	734
Mph1103I	ATGCAT	1 cut(s)	1522
MroXI	GAANNNNTTC	1 cut(s)	1500
MscI	TGGCCA	1 cut(s)	734
MseI	TTAA	8 cut(s)	360, 516, 1050, 1431, 1631, 1796, 2334, 2465
MslI	CAYNNNNRTG	7 cut(s)	227, 687, 954, 1041, 1217, 1541, 2365
Msp20I	TGGCCA	1 cut(s)	734
MspA1I	CMGCKG	3 cut(s)	722, 2090, 2692
MspCI	CTTAAG	1 cut(s)	515
MspI	CCGG	2 cut(s)	69, 104
MspR9I	CCNGG	1 cut(s)	318
MunI	CAATTG	3 cut(s)	1662, 1752, 2385
Mva1269I	GAATGC	2 cut(s)	478, 2243
MvaI	CCWGG	1 cut(s)	318
MvnI	CGCG	5 cut(s)	141, 356, 380, 2096, 2692
MwoI	GCNNNNNNNGC	9 cut(s)	197, 1172, 1690, 2093, 2468, 2597, 2606, 2698, 2707
NcoI	CCATGG	1 cut(s)	334
NdeI	CATATG	1 cut(s)	898
NdeII	GATC	9 cut(s)	567, 634, 679, 1102, 1381, 2496, 2553, 2628, 2641
NlaIV	GGNNCC	5 cut(s)	1104, 1356, 1746, 2222, 2232
NmeAIII	GCCGAG	1 cut(s)	916
NmuCI	GTSAC	2 cut(s)	3, 2358
NsbI	TGCGCA	1 cut(s)	1181
NsiI	ATGCAT	1 cut(s)	1522
NspI	RCATGY	2 cut(s)	780, 2290
NspV	TTCGAA	2 cut(s)	464, 810
OliI	CACNNNNGTG	2 cut(s)	954, 2365
PaeR7I	CTCGAG	1 cut(s)	1725
PagI	TCATGA	2 cut(s)	561, 2394
PceI	AGGCCT	1 cut(s)	486
PciI	ACATGT	2 cut(s)	776, 2286
PciSI	GCTCTTC	1 cut(s)	2700
PcsI	WCGNNNNNNNCGW	1 cut(s)	1928
PctI	GAATGC	2 cut(s)	478, 2243
PdmI	GAANNNNTTC	1 cut(s)	1500
PflFI	GACNNNGTC	1 cut(s)	2657
PflMI	CCANNNNNTGG	3 cut(s)	340, 1667, 2432
PleI	GAGTC	5 cut(s)	158, 219, 901, 2129, 2694
PpsI	GAGTC	5 cut(s)	158, 219, 901, 2129, 2694
PpuMI	RGGWCCY	1 cut(s)	1574
PscI	ACATGT	2 cut(s)	776, 2286
PshAI	GACNNNNGTC	1 cut(s)	528
Psp124BI	GAGCTC	2 cut(s)	561, 2473
Psp5II	RGGWCCY	1 cut(s)	1574
Psp6I	CCWGG	1 cut(s)	316
PspFI	CCCAGC	1 cut(s)	305
PspGI	CCWGG	1 cut(s)	316
PspN4I	GGNNCC	5 cut(s)	1104, 1356, 1746, 2222, 2232
PspPI	GGNCC	4 cut(s)	320, 946, 1574, 2572
PspPPI	RGGWCCY	1 cut(s)	1574
PstNI	CAGNNNCTG	2 cut(s)	1529, 2045
PsuI	RGATCY	3 cut(s)	1102, 1381, 2496
PsyI	GACNNNGTC	1 cut(s)	2657
PvuII	CAGCTG	2 cut(s)	722, 2090
RsaI	GTAC	4 cut(s)	824, 1313, 1356, 2546
RsaNI	GTAC	4 cut(s)	823, 1312, 1355, 2545
RseI	CAYNNNNRTG	7 cut(s)	227, 687, 954, 1041, 1217, 1541, 2365
SacI	GAGCTC	2 cut(s)	561, 2473
SacII	CCGCGG	1 cut(s)	2693
SalI	GTCGAC	1 cut(s)	1731
SapI	GCTCTTC	1 cut(s)	2700
SaqAI	TTAA	8 cut(s)	360, 516, 1050, 1431, 1631, 1796, 2334, 2465
Sau3AI	GATC	9 cut(s)	567, 634, 679, 1102, 1381, 2496, 2553, 2628, 2641
Sau96I	GGNCC	4 cut(s)	320, 946, 1574, 2572
SchI	GAGTC	5 cut(s)	158, 220, 902, 2130, 2695
ScrFI	CCNGG	1 cut(s)	318
SduI	GDGCHC	4 cut(s)	561, 1048, 2394, 2473
Sfr274I	CTCGAG	1 cut(s)	1725
Sfr303I	CCGCGG	1 cut(s)	2693
SfuI	TTCGAA	2 cut(s)	464, 810
SgrBI	CCGCGG	1 cut(s)	2693
SinI	GGWCC	4 cut(s)	320, 946, 1574, 2572
SlaI	CTCGAG	1 cut(s)	1725
SmiMI	CAYNNNNRTG	7 cut(s)	227, 687, 954, 1041, 1217, 1541, 2365
SmlI	CTYRAG	4 cut(s)	515, 1477, 1725, 2195
SmoI	CTYRAG	4 cut(s)	515, 1477, 1725, 2195
SpeI	ACTAGT	1 cut(s)	1240
SseBI	AGGCCT	1 cut(s)	486
SsiI	CCGC	8 cut(s)	66, 141, 198, 217, 422, 501, 2690, 2692
SspI	AATATT	1 cut(s)	1010
SspMI	CTAG	7 cut(s)	252, 404, 488, 885, 1241, 1511, 2670
SstI	GAGCTC	2 cut(s)	561, 2473
StuI	AGGCCT	1 cut(s)	486
StyD4I	CCNGG	1 cut(s)	316
StyI	CCWWGG	4 cut(s)	334, 1887, 2348, 2575
TaaI	ACNGT	6 cut(s)	755, 827, 1072, 2516, 2635, 2722
TaiI	ACGT	5 cut(s)	421, 958, 1846, 2170, 2307
TauI	GCSGC	3 cut(s)	68, 144, 503
Tru1I	TTAA	8 cut(s)	360, 516, 1050, 1431, 1631, 1796, 2334, 2465
Tru9I	TTAA	8 cut(s)	360, 516, 1050, 1431, 1631, 1796, 2334, 2465
TscAI	CASTG	5 cut(s)	856, 1587, 1911, 2451, 2638
TseFI	GTSAC	2 cut(s)	3, 2358
TseI	GCWGC	8 cut(s)	302, 719, 961, 1604, 2087, 2459, 2535, 2591
Tsp45I	GTSAC	2 cut(s)	3, 2358
TspDTI	ATGAA	7 cut(s)	734, 854, 1794, 1833, 2025, 2031, 2160
TspGWI	ACGGA	3 cut(s)	15, 162, 1573
TspRI	CASTG	5 cut(s)	856, 1587, 1911, 2451, 2638
Tth111I	GACNNNGTC	1 cut(s)	2657
Van91I	CCANNNNNTGG	3 cut(s)	340, 1667, 2432
Vha464I	CTTAAG	1 cut(s)	515
VpaK11BI	GGWCC	4 cut(s)	320, 946, 1574, 2572
XagI	CCTNNNNNAGG	2 cut(s)	1362, 2654
XapI	RAATTY	2 cut(s)	1093, 2421
XceI	RCATGY	2 cut(s)	780, 2290
XhoI	CTCGAG	1 cut(s)	1725
XmiI	GTMKAC	3 cut(s)	1732, 1788, 2291
XmnI	GAANNNNTTC	1 cut(s)	1500
XspI	CTAG	7 cut(s)	252, 404, 488, 885, 1241, 1511, 2670
Zsp2I	ATGCAT	1 cut(s)	1522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.