Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0009319

Physical Location & Seq

Genomic Coordinates Forward (+)

48789412 .. 48798728

Gene Structure 9317 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025866

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3156 bp

ATGTCCACTCTCTTCCTCTCCCTCCCTACTTTCCCCACCAAATTCCACCACCCAAACGACGCCGTTTCCGCTTCCGTAACCCTCCGCGCCTCCGCCGCCGTCTCCGCCCCCGAGAAGCGGACCCGACGCAAGAAGCGGCAGCCGAAGCGCGGCGACGATGACTCCTCCCCGTCCTCCTCGCCCTCTTCCTCCTCCTCCGCCGCCGAGAAGAGCCTCCGCTTCACCTTTATGGAGGAGCTCATGTCCCGGGCCCGCAACCGCGACGCCGTCGGCGTCTCCGATGTTATCTACGACATGGTCGCCGCCGGCCTCACCCCCGGCCCTCGCTCCTTCCACGGATTGGTCGTCGCTCACGCCATGAACGGCGACACCGAGTCCGCGATGCAAACGTTGAGAAGGGAGCTCAGTTCGGGGCTTCGTCCTCTCCACGAAACGTTTATCGCCTTGATTAGGTTGTTTGGCTCAAAAGGTCGAGCTACGAGGGGGCTAGAAATCCTTGCAGCCATGGAGAAATTAAATTACGACATTCGCCAGGCTTGGATGCTTCTCGTTGAGGAGCTTGTTCGGACACGCTATTTGGAAGATGCCAACAGGGTGTTCTTGAAGGGTGCCAAAGGTGGGCTGAGAGCTACGGACGAGGTGTATGATCTTCTTATAGTGGAGGACTGTAAAGTCGGGGATCATTCTAATGCATTGGAAATTGCTTATGAGATGGAGGCAGCTGGGCGGATGGCAACAACTTTTCATTTCAATTGCCTTCTTAGTGTGCAGGCTACTTGTGGAATTCCTGAAATAGCTTTCGCTACGTTTGAGAACATGCAGTATGGAGAAGAATACATGAAACCTGATACAGAGACATATAATTGGGTGATTCAAGCATATACCAGAGCTGAATCTTATGATAGAGTGCAAGATGTTGCTGAGTTACTTGGCCTGATGGTTGAAGACCACAAGCGTTTGCAGCCTAATGTGAAAACCTATGCGTTGCTGATTGAGTGCTTTACCAAGTATTGTGTAGTGCGAGAGGCAATACGGCATTTTCGTGCTCTCAAATTTTTTGAAGGAGGGACAAAAGTTTTACATAATGAAGGAAACTTTGGGGACCCCTTATCTTTGTATCTTCGAGCTTTATGTCGAGAAGGAAGAGTGGTTGAGTTGCTAGAAGCTTTAGAAGCCATGGCCCAAGACAACCAGCCAATTCCACTGCGAGCCATGATATTGAGCAGAAAGTATCGAACCCTGGTGAGCTCATGGATTGAACCTTTGCAAGAGGAAGCTGAACTTGGATATGAGATTGATTACATAGCCAGGTACATTGCAGAGGGAGGGCTTACTGGTGAACGCAAGCGATGGGTGCCTCGAAGAGGGAAAACTCCACTAGATCCTGATGCTGATGGTTTTATATATTCTAACCCTATGGAAACCTCATTCAAACAACGGTGTCTCGAGGATTGGAAGACACACCACAGAAAGCTCTTGAGAACTTTACAGAATGAAGGACTTGCAGCTTTAGGGGATGCATCTGAATCAGATTATATTAGAGTAGAGAATAGGTTAAGGAAGATCATAAAGGGTCCTGACCAGAGTGTTTTAAAGCCCAAAGCTGCTAGTAAGATGTTAGTATCTGAACTGAAGGAAGAACTAGAAGCTCAGGATCTGCCAACTGATGGAACTAGAAATGTGCTTTACCAGCGAGTCCAAAAAGCAAGGAGAATAAATCGCTCTCGTGGTCGACCCCTCTGGGTTCCTCCTGTGGAGGAGGAGGAAGAGGAGGTTGATGAAGAGCTGGATGAACTAATCTCAAGGATCAAGCTGGAAGAAGGGAATACAGAGTTCTGGAAACGCCGTTTCCTTGGAGAAGGCTTCAGCAGCGATCAGGAAAAGCAATTAGATAGTGGCAAACTTGAACCTCTAGATGTCACAGATAGTGTCAATGTTGTAGATGTGGCAAAAGAGGTTGAAGATGATGAGGCTGAGGAAGCTGATGATGAGGATGAGGATGAGGATGACAATAATGATAATGATGACGATGATGACGACGACGAAGAGGAGGAGGAGGAAGTAGAGGTGGGGGTAGAAGTAGAACAAGCTGAGAGACAAGATGTAGAAAGGGTGAAGCAAAAGGAAAATGAAGCTAAGAAGCCTCTTCAAATGATTGGAGTACAGTTGTTAAAAGATTCTGACCAGACGAGTACATCATCTAAAAAGTCAAGGAGAAGAGCTTCTCGAAGAATATCAGCTGAGGATGATGCTGATGATGACTGGTTTCCTGAGGATATCTTTGAGGCATTTAAGGAGCTGAGGAACAGGAGGATCTTTGATGAATCTGACATGTATACAATCGCTGATGCTTGGGGTTGGACATGGGAGAGAGAATACAAGAATAGATCTCCAAGAAGATGGTCACAAGAATGGGAAGTTGAGCTGGCAATTAAAGTTATGCTGAAGGTGATGGAACTGGGGGGAACACCCACAATTGGGGATTGTGCCATGATTTTGCGTGCAGCCATAAAGGCTCCTCTCCCTTCAGCTTTCTTGAAGATCTTACAGACTACACATAGTCTTGGCCATGTATTTGGCAGTCCACTCTATGATGAAATTATCTCGCTATGCCTTGATCTTGGAGAGCTGGATGCAGCCGTTGCCATTGTTGCAGACTTAGAGACCACTGGGATCAAAGTCCCAGACGAGACCTTGGACAGGGAACAAGGTCGAAGCCGCCAGAAAGAGGTTGGAGCGGCCTTCGAAGGAGGAGACGATGTCGTCGCTGTCATTTTTGGACCAGACGCCGGAGTTTTAGGGCAGGTGCTTTTACTGACACTGGAGCTCACATACCAGATCTTCTGGATGACAACGACTACGATCCAGTCACGGAGGAAGATGGAGGAGACCTCGACCGTCGTCGATGAAGCCGTTACCTCTGGTGACACACACCGCTCCGGCCCGGTGAATCAGAAAATCGGACGACCATCCACCGACGTCGATCTGTTCACAGAAATCTCAATTATCAGAGAAATCGAGAAATATAGGTGGGTGGATCTAGTGGAATTCAGAATCTGGCTTTTTCTAGGGTTTGGTTTTGAACCTCATCTCCCAAAGCTTACTCGACAATGCACCGGTGAAGACGCGCGATTGAGAAAATTGGATGCCGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAP

Protein Analysis

1052

Amino Acids

119.37

Weight (kDa)

4.88

Isoelectric Point (pI)

50.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAP	PF02037	537 - 570	2.5e-07	SAP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04260
fragaria_vesca	FvH4_6g01350 FvH4_6g01350 FvH4_6g01350 FvH4_6g01352
malus_domestica	MD04G1234900.v1.1
prunus_persica	Prupe.6G354700_v2.0.a1 Prupe.6G354700_v2.0.a1
pyrus_communis	pycom04g20830 pycom04g20860
rosa_chinensis	RchiOBHm_Chr3g0448921
rosa_laevigata	RLG00000025866
rosa_multiflora	Rmu_sc0003116.1_g000017
rosa_roxburghii	Rroxscaffold_6G00427100
rosa_rugosa	Rorug02G0617100
rosa_samantha	Rh3AG015500 Rh3BG015500 Rh3BG015600 Rh3CG014400 Rh3CG014600 Rh3DG015900
rosa_wichuraiana	Rw3G001150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2794
AasI	GACNNNNNNGTC	2 cut(s)	671, 2762
AatII	GACGTC	1 cut(s)	2982
Acc36I	ACCTGC	1 cut(s)	2794
AccB1I	GGYRCC	2 cut(s)	608, 1354
AccB7I	CCANNNNNTGG	2 cut(s)	340, 1667
AccBSI	CCGCTC	2 cut(s)	2738, 2937
AccI	GTMKAC	2 cut(s)	1732, 2336
AccII	CGCG	6 cut(s)	87, 150, 261, 380, 3128, 3130
AclI	AACGTT	2 cut(s)	389, 434
AclWI	GGATC	8 cut(s)	687, 1376, 1662, 1814, 2321, 2681, 2857, 3045
AcoI	YGGCCR	1 cut(s)	2566
AcsI	RAATTY	4 cut(s)	41, 783, 1052, 3047
AcuI	CTGAAG	4 cut(s)	1652, 1849, 2465, 2511
AcyI	GRCGYC	5 cut(s)	60, 264, 273, 2787, 2979
AfaI	GTAC	3 cut(s)	1313, 2163, 2194
AflIII	ACRYGT	1 cut(s)	2331
AgeI	ACCGGT	1 cut(s)	3116
AhdI	GACNNNNNGTC	1 cut(s)	373
AjnI	CCWGG	3 cut(s)	531, 1239, 1307
AjuI	GAANNNNNNNTTGG	6 cut(s)	581, 613, 1080, 1112, 1266, 1298
AloI	GAACNNNNNNTCC	2 cut(s)	3075, 3107
Alw21I	GWGCWC	5 cut(s)	240, 405, 1048, 1250, 2829
Alw26I	GTCTC	9 cut(s)	106, 280, 848, 1448, 2089, 2657, 2684, 2748, 2882
AlwI	GGATC	8 cut(s)	687, 1376, 1662, 1814, 2321, 2681, 2857, 3045
AlwNI	CAGNNNCTG	2 cut(s)	1657, 3057
Ama87I	CYCGRG	3 cut(s)	110, 246, 1445
AoxI	GGCC	8 cut(s)	249, 307, 319, 931, 1179, 2566, 2739, 2941
ApaI	GGGCCC	1 cut(s)	253
ApeKI	GCWGC	9 cut(s)	139, 500, 719, 961, 1505, 1604, 1869, 2504, 2636
ApoI	RAATTY	4 cut(s)	41, 783, 1052, 3047
ArsI	GACNNNNNNTTYG	2 cut(s)	559, 591
AsiGI	ACCGGT	1 cut(s)	3116
Asp700I	GAANNNNTTC	1 cut(s)	2221
AspLEI	GCGC	3 cut(s)	89, 150, 3130
AspS9I	GGNCC	9 cut(s)	120, 249, 250, 320, 1102, 1180, 1574, 2780, 2942
AsuC2I	CCSGG	4 cut(s)	247, 248, 318, 2945
AsuII	TTCGAA	1 cut(s)	2745
AvaI	CYCGRG	3 cut(s)	110, 246, 1445
AvaII	GGWCC	4 cut(s)	120, 1102, 1574, 2780
AxyI	CCTNAGG	1 cut(s)	2271
BaeGI	GKGCMC	1 cut(s)	253
BalI	TGGCCA	1 cut(s)	2568
BanI	GGYRCC	2 cut(s)	608, 1354
BanII	GRGCYC	5 cut(s)	240, 253, 405, 1250, 2829
BauI	CACGAG	1 cut(s)	1725
BbsI	GAAGAC	3 cut(s)	951, 1463, 3129
Bbv12I	GWGCWC	5 cut(s)	240, 405, 1048, 1250, 2829
BbvCI	CCTCAGC	3 cut(s)	1974, 2241, 2300
BbvI	GCAGC	9 cut(s)	151, 512, 731, 973, 1517, 1591, 1881, 2516, 2648
BceAI	ACGGC	8 cut(s)	47, 83, 251, 379, 1049, 1830, 2624, 2897
BciT130I	CCWGG	3 cut(s)	533, 1241, 1309
BcnI	CCSGG	4 cut(s)	247, 248, 318, 2945
BcoDI	GTCTC	9 cut(s)	106, 280, 848, 1448, 2089, 2657, 2684, 2748, 2882
BfaI	CTAG	9 cut(s)	488, 1160, 1379, 1608, 1643, 1674, 1913, 3041, 3068
BfuAI	ACCTGC	1 cut(s)	2794
BglI	GCCNNNNNGGC	1 cut(s)	2513
BglII	AGATCT	3 cut(s)	2387, 2541, 2838
Bme1390I	CCNGG	7 cut(s)	247, 248, 318, 533, 1241, 1309, 2945
Bme18I	GGWCC	4 cut(s)	120, 1102, 1574, 2780
BmeRI	GACNNNNNGTC	1 cut(s)	373
BmeT110I	CYCGRG	3 cut(s)	110, 246, 1445
BmgT120I	GGNCC	9 cut(s)	120, 249, 250, 320, 1102, 1180, 1574, 2780, 2942
BmiI	GGNNCC	9 cut(s)	122, 251, 610, 1103, 1104, 1356, 1575, 1746, 2517
BmrFI	CCNGG	7 cut(s)	247, 248, 318, 533, 1241, 1309, 2945
BmrI	ACTGGG	2 cut(s)	2468, 2679
BmuI	ACTGGG	2 cut(s)	2468, 2679
BoxI	GACNNNNGTC	1 cut(s)	2900
BpiI	GAAGAC	3 cut(s)	951, 1463, 3129
BplI	GAGNNNNNCTC	2 cut(s)	2876, 2908
BpmI	CTGGAG	1 cut(s)	2843
Bpu10I	CCTNAGC	4 cut(s)	1650, 1974, 2241, 2300
Bpu14I	TTCGAA	1 cut(s)	2745
BpuEI	CTTGAG	2 cut(s)	1498, 1786
BpuMI	CCSGG	4 cut(s)	247, 248, 318, 2945
BsaHI	GRCGYC	5 cut(s)	60, 264, 273, 2787, 2979
BsaI	GGTCTC	3 cut(s)	2657, 2684, 2882
BsaJI	CCNNGG	8 cut(s)	246, 316, 334, 504, 1176, 1239, 1852, 2694
BsaWI	WCCGGW	1 cut(s)	3116
BsaXI	ACNNNNNCTCC	8 cut(s)	146, 176, 227, 257, 2745, 2775, 3075, 3105
Bse118I	RCCGGY	3 cut(s)	305, 3116, 3149
Bse1I	ACTGG	6 cut(s)	1339, 2267, 2463, 2674, 2826, 2866
Bse21I	CCTNAGG	1 cut(s)	2271
Bse3DI	GCAATG	1 cut(s)	1314
BseBI	CCWGG	3 cut(s)	533, 1241, 1309
BseDI	CCNNGG	8 cut(s)	246, 316, 334, 504, 1176, 1239, 1852, 2694
BseMI	GCAATG	1 cut(s)	1314
BseMII	CTCAG	9 cut(s)	418, 614, 912, 1664, 1965, 2082, 2232, 2262, 2291
BseNI	ACTGG	6 cut(s)	1339, 2267, 2463, 2674, 2826, 2866
BseSI	GKGCMC	1 cut(s)	253
BseXI	GCAGC	9 cut(s)	151, 512, 731, 973, 1517, 1591, 1881, 2516, 2648
BseYI	CCCAGC	1 cut(s)	722
BsgI	GTGCAG	2 cut(s)	788, 2523
Bsh1236I	CGCG	6 cut(s)	87, 150, 261, 380, 3128, 3130
Bsh1285I	CGRYCG	1 cut(s)	2898
BshFI	GGCC	8 cut(s)	251, 309, 321, 933, 1181, 2568, 2741, 2943
BshNI	GGYRCC	2 cut(s)	608, 1354
BshTI	ACCGGT	1 cut(s)	3116
BsiEI	CGRYCG	1 cut(s)	2898
BsiHKAI	GWGCWC	5 cut(s)	240, 405, 1048, 1250, 2829
BsiHKCI	CYCGRG	3 cut(s)	110, 246, 1445
BsiSI	CCGG	8 cut(s)	247, 306, 318, 2790, 2940, 2945, 3117, 3150
BslFI	GGGAC	4 cut(s)	229, 1081, 1115, 2666
BsmAI	GTCTC	9 cut(s)	106, 280, 848, 1448, 2089, 2657, 2684, 2748, 2882
BsmBI	CGTCTC	3 cut(s)	106, 280, 2748
BsmFI	GGGAC	4 cut(s)	229, 1081, 1115, 2666
BsnI	GGCC	8 cut(s)	251, 309, 321, 933, 1181, 2568, 2741, 2943
Bso31I	GGTCTC	3 cut(s)	2657, 2684, 2882
BsoBI	CYCGRG	3 cut(s)	110, 246, 1445
Bsp119I	TTCGAA	1 cut(s)	2745
Bsp120I	GGGCCC	1 cut(s)	249
Bsp1286I	GDGCHC	6 cut(s)	240, 253, 405, 1048, 1250, 2829
Bsp19I	CCATGG	2 cut(s)	504, 1176
BspANI	GGCC	8 cut(s)	251, 309, 321, 933, 1181, 2568, 2741, 2943
BspCNI	CTCAG	9 cut(s)	417, 615, 913, 1663, 1966, 2083, 2233, 2263, 2292
BspFNI	CGCG	6 cut(s)	87, 150, 261, 380, 3128, 3130
BspLI	GGNNCC	9 cut(s)	122, 251, 610, 1103, 1104, 1356, 1575, 1746, 2517
BspMI	ACCTGC	1 cut(s)	2794
BspPI	GGATC	8 cut(s)	687, 1376, 1662, 1814, 2321, 2681, 2857, 3045
BspQI	GCTCTTC	3 cut(s)	203, 1776, 2212
BspT104I	TTCGAA	1 cut(s)	2745
BspT107I	GGYRCC	2 cut(s)	608, 1354
BspTNI	GGTCTC	3 cut(s)	2657, 2684, 2882
BsrBI	CCGCTC	2 cut(s)	2738, 2937
BsrDI	GCAATG	1 cut(s)	1314
BsrFI	RCCGGY	3 cut(s)	305, 3116, 3149
BsrI	ACTGG	6 cut(s)	1339, 2267, 2463, 2674, 2826, 2866
BssAI	RCCGGY	3 cut(s)	305, 3116, 3149
BssECI	CCNNGG	8 cut(s)	246, 316, 334, 504, 1176, 1239, 1852, 2694
BssNAI	GTATAC	1 cut(s)	2337
BssNI	GRCGYC	5 cut(s)	60, 264, 273, 2787, 2979
BssSI	CACGAG	1 cut(s)	1725
BssT1I	CCWWGG	4 cut(s)	504, 1176, 1852, 2694
Bst1107I	GTATAC	1 cut(s)	2337
Bst2BI	CACGAG	1 cut(s)	1725
Bst2UI	CCWGG	3 cut(s)	533, 1241, 1309
Bst4CI	ACNGT	4 cut(s)	668, 1440, 2166, 2899
BstACI	GRCGYC	5 cut(s)	60, 264, 273, 2787, 2979
BstAPI	GCANNNNNTGC	1 cut(s)	2642
BstBI	TTCGAA	1 cut(s)	2745
BstC8I	GCNNGC	8 cut(s)	253, 307, 771, 1209, 1346, 2427, 2502, 3151
BstDSI	CCRYGG	3 cut(s)	334, 504, 1176
BstENI	CCTNNNNNAGG	3 cut(s)	448, 1362, 2698
BstFNI	CGCG	6 cut(s)	87, 150, 261, 380, 3128, 3130
BstHHI	GCGC	3 cut(s)	89, 150, 3130
BstMAI	GTCTC	9 cut(s)	106, 280, 848, 1448, 2089, 2657, 2684, 2748, 2882
BstMCI	CGRYCG	1 cut(s)	2898
BstNI	CCWGG	3 cut(s)	533, 1241, 1309
BstNSI	RCATGY	2 cut(s)	820, 2335
BstPAI	GACNNNNGTC	1 cut(s)	2900
BstSCI	CCNGG	7 cut(s)	245, 246, 316, 531, 1239, 1307, 2943
BstSLI	GKGCMC	1 cut(s)	253
BstUI	CGCG	6 cut(s)	87, 150, 261, 380, 3128, 3130
BstV1I	GCAGC	9 cut(s)	151, 512, 731, 973, 1517, 1591, 1881, 2516, 2648
BstV2I	GAAGAC	3 cut(s)	951, 1463, 3129
BstX2I	RGATCY	7 cut(s)	1381, 1654, 2313, 2387, 2541, 2838, 3037
BstXI	CCANNNNNNTGG	2 cut(s)	2400, 2576
BstYI	RGATCY	7 cut(s)	1381, 1654, 2313, 2387, 2541, 2838, 3037
BstZ17I	GTATAC	1 cut(s)	2337
Bsu36I	CCTNAGG	1 cut(s)	2271
BsuRI	GGCC	8 cut(s)	251, 309, 321, 933, 1181, 2568, 2741, 2943
BtgI	CCRYGG	3 cut(s)	334, 504, 1176
BtgZI	GCGATG	2 cut(s)	395, 1363
BtsI	GCAGTG	1 cut(s)	1202
BtsIMutI	CAGTG	3 cut(s)	1202, 2667, 2819
BveI	ACCTGC	1 cut(s)	2794
Cac8I	GCNNGC	8 cut(s)	253, 307, 771, 1209, 1346, 2427, 2502, 3151
CaiI	CAGNNNCTG	2 cut(s)	1657, 3057
CfoI	GCGC	3 cut(s)	89, 150, 3130
Cfr10I	RCCGGY	3 cut(s)	305, 3116, 3149
Cfr13I	GGNCC	9 cut(s)	120, 249, 250, 320, 1102, 1180, 1574, 2780, 2942
Cfr9I	CCCGGG	1 cut(s)	246
CseI	GACGC	6 cut(s)	68, 135, 262, 272, 2795, 3134
Csp6I	GTAC	3 cut(s)	1312, 2162, 2193
CspAI	ACCGGT	1 cut(s)	3116
CviQI	GTAC	3 cut(s)	1312, 2162, 2193
DraI	TTTAAA	1 cut(s)	1593
DrdI	GACNNNNNNGTC	2 cut(s)	671, 2762
DriI	GACNNNNNGTC	1 cut(s)	373
DseDI	GACNNNNNNGTC	2 cut(s)	671, 2762
EaeI	YGGCCR	1 cut(s)	2566
Eam1105I	GACNNNNNGTC	1 cut(s)	373
EciI	GGCGGA	4 cut(s)	82, 94, 187, 742
Ecl136II	GAGCTC	4 cut(s)	238, 403, 1248, 2827
Eco130I	CCWWGG	4 cut(s)	504, 1176, 1852, 2694
Eco24I	GRGCYC	5 cut(s)	240, 253, 405, 1250, 2829
Eco31I	GGTCTC	3 cut(s)	2657, 2684, 2882
Eco32I	GATATC	1 cut(s)	2278
Eco47I	GGWCC	4 cut(s)	120, 1102, 1574, 2780
Eco53kI	GAGCTC	4 cut(s)	238, 403, 1248, 2827
Eco57I	CTGAAG	4 cut(s)	1652, 1849, 2465, 2511
Eco81I	CCTNAGG	1 cut(s)	2271
Eco88I	CYCGRG	3 cut(s)	110, 246, 1445
EcoICRI	GAGCTC	4 cut(s)	238, 403, 1248, 2827
EcoNI	CCTNNNNNAGG	3 cut(s)	448, 1362, 2698
EcoO109I	RGGNCCY	2 cut(s)	1102, 1574
EcoRI	GAATTC	2 cut(s)	783, 3047
EcoRII	CCWGG	3 cut(s)	531, 1239, 1307
EcoRV	GATATC	1 cut(s)	2278
EcoT14I	CCWWGG	4 cut(s)	504, 1176, 1852, 2694
EcoT22I	ATGCAT	2 cut(s)	694, 1522
EcoT38I	GRGCYC	5 cut(s)	240, 253, 405, 1250, 2829
ErhI	CCWWGG	4 cut(s)	504, 1176, 1852, 2694
Esp3I	CGTCTC	3 cut(s)	106, 280, 2748
FalI	AAGNNNNNCTT	2 cut(s)	1266, 1298
FaqI	GGGAC	4 cut(s)	229, 1081, 1115, 2666
FauI	CCCGC	1 cut(s)	260
FblI	GTMKAC	2 cut(s)	1732, 2336
FriOI	GRGCYC	5 cut(s)	240, 253, 405, 1250, 2829
FspBI	CTAG	9 cut(s)	488, 1160, 1379, 1608, 1643, 1674, 1913, 3041, 3068
GlaI	GCGC	3 cut(s)	88, 149, 3129
GsaI	CCCAGC	1 cut(s)	726
GsuI	CTGGAG	1 cut(s)	2843
HaeIII	GGCC	8 cut(s)	251, 309, 321, 933, 1181, 2568, 2741, 2943
HapII	CCGG	8 cut(s)	247, 306, 318, 2790, 2940, 2945, 3117, 3150
HgaI	GACGC	6 cut(s)	68, 135, 262, 272, 2795, 3134
HhaI	GCGC	3 cut(s)	89, 150, 3130
Hin1I	GRCGYC	5 cut(s)	60, 264, 273, 2787, 2979
Hin6I	GCGC	3 cut(s)	87, 148, 3128
HinP1I	GCGC	3 cut(s)	87, 148, 3128
HincII	GTYRAC	1 cut(s)	1733
HindII	GTYRAC	1 cut(s)	1733
HindIII	AAGCTT	2 cut(s)	1164, 3098
HpaII	CCGG	8 cut(s)	247, 306, 318, 2790, 2940, 2945, 3117, 3150
Hpy166II	GTNNAC	6 cut(s)	6, 1340, 1733, 2337, 2585, 2991
Hpy8I	GTNNAC	6 cut(s)	6, 1340, 1733, 2337, 2585, 2991
HpyCH4III	ACNGT	4 cut(s)	668, 1440, 2166, 2899
HpyCH4IV	ACGT	4 cut(s)	389, 434, 806, 2979
HpySE526I	ACGT	4 cut(s)	389, 434, 806, 2979
Hsp92I	GRCGYC	5 cut(s)	60, 264, 273, 2787, 2979
HspAI	GCGC	3 cut(s)	87, 148, 3128
KflI	GGGWCCC	1 cut(s)	1102
KroI	GCCGGC	2 cut(s)	305, 3149
KroNI	GCCGGC	2 cut(s)	307, 3151
LguI	GCTCTTC	3 cut(s)	203, 1776, 2212
LmnI	GCTCC	9 cut(s)	235, 332, 400, 556, 2296, 2521, 2735, 2824, 2942
Lsp1109I	GCAGC	9 cut(s)	151, 512, 731, 973, 1517, 1591, 1881, 2516, 2648
MaeI	CTAG	9 cut(s)	488, 1160, 1379, 1608, 1643, 1674, 1913, 3041, 3068
MaeII	ACGT	4 cut(s)	389, 434, 806, 2979
MaeIII	GTNAC	7 cut(s)	76, 924, 1918, 2403, 2868, 2914, 2924
MbiI	CCGCTC	2 cut(s)	2738, 2937
MfeI	CAATTG	2 cut(s)	751, 2475
MflI	RGATCY	7 cut(s)	1381, 1654, 2313, 2387, 2541, 2838, 3037
MhlI	GDGCHC	6 cut(s)	240, 253, 405, 1048, 1250, 2829
MlsI	TGGCCA	1 cut(s)	2568
MluNI	TGGCCA	1 cut(s)	2568
MlyI	GAGTC	3 cut(s)	155, 383, 1704
MmeI	TCCRAC	2 cut(s)	2339, 2713
Mox20I	TGGCCA	1 cut(s)	2568
Mph1103I	ATGCAT	2 cut(s)	694, 1522
MroNI	GCCGGC	2 cut(s)	305, 3149
MroXI	GAANNNNTTC	1 cut(s)	2221
MscI	TGGCCA	1 cut(s)	2568
MseI	TTAA	6 cut(s)	515, 1556, 1592, 2171, 2292, 2433
MslI	CAYNNNNRTG	4 cut(s)	227, 687, 1041, 2410
Msp20I	TGGCCA	1 cut(s)	2568
MspA1I	CMGCKG	2 cut(s)	722, 2240
MspI	CCGG	8 cut(s)	247, 306, 318, 2790, 2940, 2945, 3117, 3150
MspR9I	CCNGG	7 cut(s)	247, 248, 318, 533, 1241, 1309, 2945
MunI	CAATTG	2 cut(s)	751, 2475
MvaI	CCWGG	3 cut(s)	533, 1241, 1309
MvnI	CGCG	6 cut(s)	87, 150, 261, 380, 3128, 3130
NaeI	GCCGGC	2 cut(s)	307, 3151
NciI	CCSGG	4 cut(s)	247, 248, 318, 2945
NcoI	CCATGG	2 cut(s)	504, 1176
NgoMIV	GCCGGC	2 cut(s)	305, 3149
NlaIV	GGNNCC	9 cut(s)	122, 251, 610, 1103, 1104, 1356, 1575, 1746, 2517
NmeAIII	GCCGAG	1 cut(s)	229
NmuCI	GTSAC	4 cut(s)	1918, 2403, 2868, 2924
NsiI	ATGCAT	2 cut(s)	694, 1522
NspI	RCATGY	2 cut(s)	820, 2335
NspV	TTCGAA	1 cut(s)	2745
PaeR7I	CTCGAG	1 cut(s)	1445
PaqCI	CACCTGC	1 cut(s)	2794
PciI	ACATGT	1 cut(s)	2331
PciSI	GCTCTTC	3 cut(s)	203, 1776, 2212
PcsI	WCGNNNNNNNCGW	7 cut(s)	270, 276, 342, 369, 1039, 2034, 2910
PdiI	GCCGGC	2 cut(s)	307, 3151
PdmI	GAANNNNTTC	1 cut(s)	2221
PfeI	GAWTC	7 cut(s)	871, 893, 1526, 2177, 2324, 2950, 3054
PflFI	GACNNNGTC	3 cut(s)	266, 296, 2759
PflMI	CCANNNNNTGG	2 cut(s)	340, 1667
PinAI	ACCGGT	1 cut(s)	3116
PleI	GAGTC	3 cut(s)	155, 382, 1703
PpsI	GAGTC	3 cut(s)	155, 382, 1703
PpuMI	RGGWCCY	2 cut(s)	1102, 1574
PscI	ACATGT	1 cut(s)	2331
PshAI	GACNNNNGTC	1 cut(s)	2900
Psp124BI	GAGCTC	4 cut(s)	240, 405, 1250, 2829
Psp1406I	AACGTT	2 cut(s)	389, 434
Psp5II	RGGWCCY	2 cut(s)	1102, 1574
Psp6I	CCWGG	3 cut(s)	531, 1239, 1307
PspFI	CCCAGC	1 cut(s)	722
PspGI	CCWGG	3 cut(s)	531, 1239, 1307
PspN4I	GGNNCC	9 cut(s)	122, 251, 610, 1103, 1104, 1356, 1575, 1746, 2517
PspOMI	GGGCCC	1 cut(s)	249
PspPI	GGNCC	9 cut(s)	120, 249, 250, 320, 1102, 1180, 1574, 2780, 2942
PspPPI	RGGWCCY	2 cut(s)	1102, 1574
PstNI	CAGNNNCTG	2 cut(s)	1657, 3057
PsuI	RGATCY	7 cut(s)	1381, 1654, 2313, 2387, 2541, 2838, 3037
PsyI	GACNNNGTC	3 cut(s)	266, 296, 2759
PvuII	CAGCTG	2 cut(s)	722, 2240
RsaI	GTAC	3 cut(s)	1313, 2163, 2194
RsaNI	GTAC	3 cut(s)	1312, 2162, 2193
RseI	CAYNNNNRTG	4 cut(s)	227, 687, 1041, 2410
SacI	GAGCTC	4 cut(s)	240, 405, 1250, 2829
SalI	GTCGAC	1 cut(s)	1731
SapI	GCTCTTC	3 cut(s)	203, 1776, 2212
SaqAI	TTAA	6 cut(s)	515, 1556, 1592, 2171, 2292, 2433
Sau96I	GGNCC	9 cut(s)	120, 249, 250, 320, 1102, 1180, 1574, 2780, 2942
SchI	GAGTC	3 cut(s)	155, 383, 1704
ScrFI	CCNGG	7 cut(s)	247, 248, 318, 533, 1241, 1309, 2945
SduI	GDGCHC	6 cut(s)	240, 253, 405, 1048, 1250, 2829
Sfr274I	CTCGAG	1 cut(s)	1445
SfuI	TTCGAA	1 cut(s)	2745
SgrAI	CRCCGGYG	1 cut(s)	3116
SinI	GGWCC	4 cut(s)	120, 1102, 1574, 2780
SlaI	CTCGAG	1 cut(s)	1445
SmaI	CCCGGG	1 cut(s)	248
SmiMI	CAYNNNNRTG	4 cut(s)	227, 687, 1041, 2410
SmlI	CTYRAG	3 cut(s)	1445, 1477, 1801
SmoI	CTYRAG	3 cut(s)	1445, 1477, 1801
SspMI	CTAG	9 cut(s)	488, 1160, 1379, 1608, 1643, 1674, 1913, 3041, 3068
SstI	GAGCTC	4 cut(s)	240, 405, 1250, 2829
StyD4I	CCNGG	7 cut(s)	245, 246, 316, 531, 1239, 1307, 2943
StyI	CCWWGG	4 cut(s)	504, 1176, 1852, 2694
TaaI	ACNGT	4 cut(s)	668, 1440, 2166, 2899
TaiI	ACGT	4 cut(s)	392, 437, 809, 2982
TatI	WGTACW	2 cut(s)	2161, 2192
TauI	GCSGC	7 cut(s)	98, 139, 153, 203, 305, 2721, 2741
TfiI	GAWTC	7 cut(s)	871, 893, 1526, 2177, 2324, 2950, 3054
Tru1I	TTAA	6 cut(s)	515, 1556, 1592, 2171, 2292, 2433
Tru9I	TTAA	6 cut(s)	515, 1556, 1592, 2171, 2292, 2433
TscAI	CASTG	3 cut(s)	1209, 2674, 2826
TseFI	GTSAC	4 cut(s)	1918, 2403, 2868, 2924
TseI	GCWGC	9 cut(s)	139, 500, 719, 961, 1505, 1604, 1869, 2504, 2636
Tsp45I	GTSAC	4 cut(s)	1918, 2403, 2868, 2924
TspGWI	ACGGA	4 cut(s)	64, 351, 647, 2887
TspMI	CCCGGG	1 cut(s)	246
TspRI	CASTG	3 cut(s)	1209, 2674, 2826
Tth111I	GACNNNGTC	3 cut(s)	266, 296, 2759
Van91I	CCANNNNNTGG	2 cut(s)	340, 1667
VpaK11BI	GGWCC	4 cut(s)	120, 1102, 1574, 2780
XagI	CCTNNNNNAGG	3 cut(s)	448, 1362, 2698
XapI	RAATTY	4 cut(s)	41, 783, 1052, 3047
XbaI	TCTAGA	1 cut(s)	1912
XceI	RCATGY	2 cut(s)	820, 2335
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2729
XhoI	CTCGAG	1 cut(s)	1445
XmaI	CCCGGG	1 cut(s)	246
XmiI	GTMKAC	2 cut(s)	1732, 2336
XmnI	GAANNNNTTC	1 cut(s)	2221
XspI	CTAG	9 cut(s)	488, 1160, 1379, 1608, 1643, 1674, 1913, 3041, 3068
ZraI	GACGTC	1 cut(s)	2980
Zsp2I	ATGCAT	2 cut(s)	694, 1522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.