Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0009319

Physical Location & Seq

Genomic Coordinates Reverse (-)

975964 .. 977272

Gene Structure 1309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG014600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGTCCACTCTCTTCCTCTCCCTCCCTACTTTCCCCTCCAAATTCCACCACCCAAACGACTCCGTTTCCGCTTCCGTAACCCTCCGCCCCTCCGCCGCCGTCTCCGCCCCCGAGAAGCGCACCCGACGCAAGAAGCGGCAGCCGAAGCGCGGCGACGATGACTCCTCCCTGTCCTCCTCGCCCTTATCCTCCTCCTCCGCCGCCGAGAAGAGCCTCCGTTTCACCTTCATGGAGGAGCTCATGTCCCGGGCCCGCAACCGCGACGCCGTCGGCGTCTCCGACGTAATCTACGACATGGTCGCCGCCGGCCTCACCCCTGGCCCTCGCTCCTTCCACGGATTGGTCGTCGCTCACGCCATGAACGGCGACGCCGAGTCCGCGATGCAAACGTTGAGAAGGGAGCTCAGTTCGGGGCTTCGTCCTCTCCACGAAACGTTTATCGCCTTGATTAGGTTGTTTGGCTCAAAAGGTCGAGCTACGAGGGGACTGGAAATCCTTGCAGCCATGGAGAAATTAAATTACGACATTCGCCAAGCTTGGATGCTTCTCGTTGAGGAGCTTGTTCGGACACGCTATTTGGAAGATGCCAACAGGGTGTTCTTGAAGGGTGCCAAAGGTGGGCTGAGAGCTACGGATGAGGTGTATGATCTTCTTATAGTGGAGGACTGTAAAGTCGGGGATCATTCTAATGCATTGGAAATTTCTTATGAGATGGAGGCAGCTGGGCGGATGGCAACAACTTTTCATTTCAATTGCCTTCTTAGTGTGCAGGCTACTTGTGGAATTCCTGAAATAGCTTTTGCTACGTTTGAGAACATGCAGTATGGAGAAGGTTTGTTTTTATTTTGTTTTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAP

Protein Analysis

285

Amino Acids

31.55

Weight (kDa)

7.06

Isoelectric Point (pI)

47.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04260
fragaria_vesca	FvH4_6g01350 FvH4_6g01350 FvH4_6g01350 FvH4_6g01352
malus_domestica	MD04G1234900.v1.1
prunus_persica	Prupe.6G354700_v2.0.a1 Prupe.6G354700_v2.0.a1
pyrus_communis	pycom04g20830 pycom04g20860
rosa_chinensis	RchiOBHm_Chr3g0448921
rosa_laevigata	RLG00000025866
rosa_multiflora	Rmu_sc0003116.1_g000017
rosa_roxburghii	Rroxscaffold_6G00427100
rosa_rugosa	Rorug02G0617100
rosa_samantha	Rh3AG015500 Rh3BG015500 Rh3BG015600 Rh3CG014400 Rh3CG014600 Rh3DG015900
rosa_wichuraiana	Rw3G001150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	671
AccB1I	GGYRCC	1 cut(s)	608
AccB7I	CCANNNNNTGG	1 cut(s)	340
AccII	CGCG	3 cut(s)	150, 261, 380
AclI	AACGTT	2 cut(s)	389, 434
AclWI	GGATC	1 cut(s)	687
AcsI	RAATTY	3 cut(s)	41, 699, 783
AcyI	GRCGYC	3 cut(s)	264, 273, 369
AfiI	CCNNNNNNNGG	4 cut(s)	149, 340, 450, 618
AgsI	TTSAA	2 cut(s)	604, 751
AhdI	GACNNNNNGTC	1 cut(s)	373
AjnI	CCWGG	1 cut(s)	316
AjuI	GAANNNNNNNTTGG	2 cut(s)	581, 613
AluBI	AGCT	8 cut(s)	238, 403, 476, 536, 559, 629, 722, 797
AluI	AGCT	8 cut(s)	238, 403, 476, 536, 559, 629, 722, 797
Alw21I	GWGCWC	2 cut(s)	240, 405
Alw26I	GTCTC	2 cut(s)	106, 280
AlwI	GGATC	1 cut(s)	687
Ama87I	CYCGRG	2 cut(s)	110, 246
AoxI	GGCC	3 cut(s)	249, 307, 319
ApaI	GGGCCC	1 cut(s)	253
ApeKI	GCWGC	3 cut(s)	139, 500, 719
ApoI	RAATTY	3 cut(s)	41, 699, 783
ArsI	GACNNNNNNTTYG	2 cut(s)	559, 591
AspLEI	GCGC	2 cut(s)	120, 150
AspS9I	GGNCC	3 cut(s)	249, 250, 320
AsuC2I	CCSGG	2 cut(s)	247, 248
AsuHPI	GGTGA	2 cut(s)	214, 304
AvaI	CYCGRG	2 cut(s)	110, 246
BaeGI	GKGCMC	1 cut(s)	253
BanI	GGYRCC	1 cut(s)	608
BanII	GRGCYC	3 cut(s)	240, 253, 405
Bbv12I	GWGCWC	2 cut(s)	240, 405
BbvI	GCAGC	3 cut(s)	151, 512, 731
BccI	CCATC	2 cut(s)	706, 724
BceAI	ACGGC	3 cut(s)	83, 251, 379
BciT130I	CCWGG	1 cut(s)	318
BcnI	CCSGG	2 cut(s)	247, 248
BcoDI	GTCTC	2 cut(s)	106, 280
BisI	GCNGC	8 cut(s)	96, 137, 140, 151, 201, 303, 501, 720
BlsI	GCNGC	8 cut(s)	97, 138, 141, 152, 202, 304, 502, 721
Bme1390I	CCNGG	3 cut(s)	247, 248, 318
BmeRI	GACNNNNNGTC	1 cut(s)	373
BmeT110I	CYCGRG	2 cut(s)	110, 246
BmgT120I	GGNCC	3 cut(s)	249, 250, 320
BmiI	GGNNCC	2 cut(s)	251, 610
BmrFI	CCNGG	3 cut(s)	247, 248, 318
BmsI	GCATC	3 cut(s)	372, 531, 574
BpuMI	CCSGG	2 cut(s)	247, 248
BsaHI	GRCGYC	3 cut(s)	264, 273, 369
BsaJI	CCNNGG	4 cut(s)	246, 316, 334, 504
BsaXI	ACNNNNNCTCC	4 cut(s)	146, 176, 227, 257
Bsc4I	CCNNNNNNNGG	4 cut(s)	149, 340, 450, 618
Bse118I	RCCGGY	1 cut(s)	305
Bse1I	ACTGG	1 cut(s)	492
BseBI	CCWGG	1 cut(s)	318
BseDI	CCNNGG	4 cut(s)	246, 316, 334, 504
BseGI	GGATG	3 cut(s)	546, 640, 735
BseLI	CCNNNNNNNGG	4 cut(s)	149, 340, 450, 618
BseMII	CTCAG	2 cut(s)	418, 614
BseNI	ACTGG	1 cut(s)	492
BseRI	GAGGAG	6 cut(s)	154, 166, 181, 184, 248, 569
BseSI	GKGCMC	1 cut(s)	253
BseXI	GCAGC	3 cut(s)	151, 512, 731
BseYI	CCCAGC	1 cut(s)	722
BsgI	GTGCAG	1 cut(s)	788
Bsh1236I	CGCG	3 cut(s)	150, 261, 380
BshFI	GGCC	3 cut(s)	251, 309, 321
BshNI	GGYRCC	1 cut(s)	608
BsiHKAI	GWGCWC	2 cut(s)	240, 405
BsiHKCI	CYCGRG	2 cut(s)	110, 246
BsiSI	CCGG	2 cut(s)	247, 306
BslFI	GGGAC	2 cut(s)	229, 498
BslI	CCNNNNNNNGG	4 cut(s)	149, 340, 450, 618
BsmAI	GTCTC	2 cut(s)	106, 280
BsmBI	CGTCTC	2 cut(s)	106, 280
BsmFI	GGGAC	2 cut(s)	229, 498
BsnI	GGCC	3 cut(s)	251, 309, 321
BsoBI	CYCGRG	2 cut(s)	110, 246
Bsp120I	GGGCCC	1 cut(s)	249
Bsp1286I	GDGCHC	3 cut(s)	240, 253, 405
Bsp143I	GATC	2 cut(s)	646, 679
Bsp19I	CCATGG	1 cut(s)	504
BspANI	GGCC	3 cut(s)	251, 309, 321
BspCNI	CTCAG	2 cut(s)	417, 615
BspFNI	CGCG	3 cut(s)	150, 261, 380
BspLI	GGNNCC	2 cut(s)	251, 610
BspPI	GGATC	1 cut(s)	687
BspQI	GCTCTTC	1 cut(s)	203
BspT107I	GGYRCC	1 cut(s)	608
BsrFI	RCCGGY	1 cut(s)	305
BsrI	ACTGG	1 cut(s)	492
BssAI	RCCGGY	1 cut(s)	305
BssECI	CCNNGG	4 cut(s)	246, 316, 334, 504
BssMI	GATC	2 cut(s)	646, 679
BssNI	GRCGYC	3 cut(s)	264, 273, 369
BssT1I	CCWWGG	1 cut(s)	504
Bst2UI	CCWGG	1 cut(s)	318
Bst4CI	ACNGT	1 cut(s)	668
Bst6I	CTCTTC	2 cut(s)	17, 203
BstACI	GRCGYC	3 cut(s)	264, 273, 369
BstC8I	GCNNGC	3 cut(s)	253, 307, 771
BstDEI	CTNAG	3 cut(s)	404, 623, 761
BstDSI	CCRYGG	2 cut(s)	334, 504
BstENI	CCTNNNNNAGG	1 cut(s)	448
BstF5I	GGATG	3 cut(s)	546, 640, 735
BstFNI	CGCG	3 cut(s)	150, 261, 380
BstHHI	GCGC	2 cut(s)	120, 150
BstKTI	GATC	2 cut(s)	649, 682
BstMAI	GTCTC	2 cut(s)	106, 280
BstMBI	GATC	2 cut(s)	646, 679
BstMWI	GCNNNNNNNGC	4 cut(s)	104, 126, 145, 377
BstNI	CCWGG	1 cut(s)	318
BstNSI	RCATGY	1 cut(s)	820
BstSCI	CCNGG	3 cut(s)	245, 246, 316
BstSLI	GKGCMC	1 cut(s)	253
BstUI	CGCG	3 cut(s)	150, 261, 380
BstV1I	GCAGC	3 cut(s)	151, 512, 731
BsuRI	GGCC	3 cut(s)	251, 309, 321
BtgI	CCRYGG	2 cut(s)	334, 504
BtgZI	GCGATG	1 cut(s)	395
BtsCI	GGATG	3 cut(s)	546, 640, 735
Cac8I	GCNNGC	3 cut(s)	253, 307, 771
CfoI	GCGC	2 cut(s)	120, 150
Cfr10I	RCCGGY	1 cut(s)	305
Cfr13I	GGNCC	3 cut(s)	249, 250, 320
Cfr9I	CCCGGG	1 cut(s)	246
CseI	GACGC	4 cut(s)	135, 262, 272, 377
CviAII	CATG	6 cut(s)	229, 241, 295, 358, 505, 817
DdeI	CTNAG	3 cut(s)	404, 623, 761
DpnI	GATC	2 cut(s)	648, 681
DpnII	GATC	2 cut(s)	646, 679
DrdI	GACNNNNNNGTC	1 cut(s)	671
DriI	GACNNNNNGTC	1 cut(s)	373
DseDI	GACNNNNNNGTC	1 cut(s)	671
Eam1104I	CTCTTC	2 cut(s)	17, 203
Eam1105I	GACNNNNNGTC	1 cut(s)	373
EarI	CTCTTC	2 cut(s)	17, 203
EciI	GGCGGA	5 cut(s)	74, 82, 94, 187, 742
Ecl136II	GAGCTC	2 cut(s)	238, 403
Eco130I	CCWWGG	1 cut(s)	504
Eco24I	GRGCYC	3 cut(s)	240, 253, 405
Eco53kI	GAGCTC	2 cut(s)	238, 403
Eco88I	CYCGRG	2 cut(s)	110, 246
EcoICRI	GAGCTC	2 cut(s)	238, 403
EcoNI	CCTNNNNNAGG	1 cut(s)	448
EcoRI	GAATTC	1 cut(s)	783
EcoRII	CCWGG	1 cut(s)	316
EcoT14I	CCWWGG	1 cut(s)	504
EcoT22I	ATGCAT	1 cut(s)	694
EcoT38I	GRGCYC	3 cut(s)	240, 253, 405
ErhI	CCWWGG	1 cut(s)	504
Esp3I	CGTCTC	2 cut(s)	106, 280
FaeI	CATG	6 cut(s)	232, 244, 298, 361, 508, 820
FaqI	GGGAC	2 cut(s)	229, 498
FatI	CATG	6 cut(s)	228, 240, 294, 357, 504, 816
FauI	CCCGC	1 cut(s)	260
Fnu4HI	GCNGC	8 cut(s)	96, 137, 140, 151, 201, 303, 501, 720
FokI	GGATG	3 cut(s)	553, 647, 742
FriOI	GRGCYC	3 cut(s)	240, 253, 405
Fsp4HI	GCNGC	8 cut(s)	96, 137, 140, 151, 201, 303, 501, 720
GlaI	GCGC	2 cut(s)	119, 149
GluI	GCNGC	8 cut(s)	96, 137, 140, 151, 201, 303, 501, 720
GsaI	CCCAGC	1 cut(s)	726
HaeIII	GGCC	3 cut(s)	251, 309, 321
HapII	CCGG	2 cut(s)	247, 306
HgaI	GACGC	4 cut(s)	135, 262, 272, 377
HhaI	GCGC	2 cut(s)	120, 150
Hin1I	GRCGYC	3 cut(s)	264, 273, 369
Hin1II	CATG	6 cut(s)	232, 244, 298, 361, 508, 820
Hin6I	GCGC	2 cut(s)	118, 148
HinP1I	GCGC	2 cut(s)	118, 148
HindIII	AAGCTT	1 cut(s)	534
HinfI	GANTC	3 cut(s)	59, 161, 374
HpaII	CCGG	2 cut(s)	247, 306
HphI	GGTGA	2 cut(s)	214, 304
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	2 cut(s)	280, 567
Hpy188III	TCNNGA	2 cut(s)	601, 788
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	7 cut(s)	129, 158, 266, 272, 284, 350, 371
HpyAV	CCTTC	6 cut(s)	235, 340, 390, 598, 767, 824
HpyCH4III	ACNGT	1 cut(s)	668
HpyCH4IV	ACGT	4 cut(s)	282, 389, 434, 806
HpyCH4V	TGCA	5 cut(s)	385, 500, 692, 769, 820
HpyF10VI	GCNNNNNNNGC	4 cut(s)	104, 126, 145, 377
HpyF3I	CTNAG	3 cut(s)	404, 623, 761
HpySE526I	ACGT	4 cut(s)	282, 389, 434, 806
Hsp92I	GRCGYC	3 cut(s)	264, 273, 369
Hsp92II	CATG	6 cut(s)	232, 244, 298, 361, 508, 820
HspAI	GCGC	2 cut(s)	118, 148
KroI	GCCGGC	1 cut(s)	305
KroNI	GCCGGC	1 cut(s)	307
Kzo9I	GATC	2 cut(s)	646, 679
LguI	GCTCTTC	1 cut(s)	203
LmnI	GCTCC	4 cut(s)	235, 332, 400, 556
Lsp1109I	GCAGC	3 cut(s)	151, 512, 731
LweI	GCATC	3 cut(s)	372, 531, 574
MaeII	ACGT	4 cut(s)	282, 389, 434, 806
MaeIII	GTNAC	1 cut(s)	76
MalI	GATC	2 cut(s)	648, 681
MboI	GATC	2 cut(s)	646, 679
MboII	GAAGA	4 cut(s)	4, 220, 593, 641
MfeI	CAATTG	1 cut(s)	751
MhlI	GDGCHC	3 cut(s)	240, 253, 405
MluCI	AATT	6 cut(s)	41, 512, 517, 699, 751, 783
MlyI	GAGTC	3 cut(s)	53, 155, 383
MmeI	TCCRAC	1 cut(s)	303
Mph1103I	ATGCAT	1 cut(s)	694
MroNI	GCCGGC	1 cut(s)	305
MseI	TTAA	2 cut(s)	515, 856
MslI	CAYNNNNRTG	2 cut(s)	227, 687
MspA1I	CMGCKG	1 cut(s)	722
MspI	CCGG	2 cut(s)	247, 306
MspR9I	CCNGG	3 cut(s)	247, 248, 318
MunI	CAATTG	1 cut(s)	751
MvaI	CCWGG	1 cut(s)	318
MvnI	CGCG	3 cut(s)	150, 261, 380
MwoI	GCNNNNNNNGC	4 cut(s)	104, 126, 145, 377
NaeI	GCCGGC	1 cut(s)	307
NciI	CCSGG	2 cut(s)	247, 248
NcoI	CCATGG	1 cut(s)	504
NdeII	GATC	2 cut(s)	646, 679
NgoMIV	GCCGGC	1 cut(s)	305
NlaIII	CATG	6 cut(s)	232, 244, 298, 361, 508, 820
NlaIV	GGNNCC	2 cut(s)	251, 610
NmeAIII	GCCGAG	2 cut(s)	229, 397
NsiI	ATGCAT	1 cut(s)	694
NspI	RCATGY	1 cut(s)	820
PciSI	GCTCTTC	1 cut(s)	203
PcsI	WCGNNNNNNNCGW	5 cut(s)	270, 276, 288, 342, 369
PdiI	GCCGGC	1 cut(s)	307
PflFI	GACNNNGTC	2 cut(s)	266, 296
PflMI	CCANNNNNTGG	1 cut(s)	340
PkrI	GCNGC	8 cut(s)	97, 138, 141, 152, 202, 304, 502, 721
PleI	GAGTC	3 cut(s)	53, 155, 382
PpsI	GAGTC	3 cut(s)	53, 155, 382
Psp124BI	GAGCTC	2 cut(s)	240, 405
Psp1406I	AACGTT	2 cut(s)	389, 434
Psp6I	CCWGG	1 cut(s)	316
PspFI	CCCAGC	1 cut(s)	722
PspGI	CCWGG	1 cut(s)	316
PspN4I	GGNNCC	2 cut(s)	251, 610
PspOMI	GGGCCC	1 cut(s)	249
PspPI	GGNCC	3 cut(s)	249, 250, 320
PsyI	GACNNNGTC	2 cut(s)	266, 296
PvuII	CAGCTG	1 cut(s)	722
RseI	CAYNNNNRTG	2 cut(s)	227, 687
SacI	GAGCTC	2 cut(s)	240, 405
SapI	GCTCTTC	1 cut(s)	203
SaqAI	TTAA	2 cut(s)	515, 856
SatI	GCNGC	8 cut(s)	96, 137, 140, 151, 201, 303, 501, 720
Sau3AI	GATC	2 cut(s)	646, 679
Sau96I	GGNCC	3 cut(s)	249, 250, 320
SchI	GAGTC	3 cut(s)	53, 155, 383
ScrFI	CCNGG	3 cut(s)	247, 248, 318
SduI	GDGCHC	3 cut(s)	240, 253, 405
SfaNI	GCATC	3 cut(s)	372, 531, 574
SmaI	CCCGGG	1 cut(s)	248
SmiMI	CAYNNNNRTG	2 cut(s)	227, 687
Sse9I	AATT	6 cut(s)	41, 512, 517, 699, 751, 783
SstI	GAGCTC	2 cut(s)	240, 405
StyD4I	CCNGG	3 cut(s)	245, 246, 316
StyI	CCWWGG	1 cut(s)	504
TaaI	ACNGT	1 cut(s)	668
TaiI	ACGT	4 cut(s)	285, 392, 437, 809
TaqI	TCGA	1 cut(s)	472
TasI	AATT	6 cut(s)	41, 512, 517, 699, 751, 783
TauI	GCSGC	5 cut(s)	98, 139, 153, 203, 305
Tru1I	TTAA	2 cut(s)	515, 856
Tru9I	TTAA	2 cut(s)	515, 856
TseI	GCWGC	3 cut(s)	139, 500, 719
TspDTI	ATGAA	3 cut(s)	217, 374, 734
TspGWI	ACGGA	5 cut(s)	52, 64, 206, 351, 647
TspMI	CCCGGG	1 cut(s)	246
Tth111I	GACNNNGTC	2 cut(s)	266, 296
Van91I	CCANNNNNTGG	1 cut(s)	340
XagI	CCTNNNNNAGG	1 cut(s)	448
XapI	RAATTY	3 cut(s)	41, 699, 783
XceI	RCATGY	1 cut(s)	820
XmaI	CCCGGG	1 cut(s)	246
Zsp2I	ATGCAT	1 cut(s)	694

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.