Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0009319

Physical Location & Seq

Genomic Coordinates Forward (+)

22263536 .. 22264518

Gene Structure 983 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g20830.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGTACCCATCTCATTCGAATTCTCTTAAACCCCTCCCGCTCAGCCGCTCGTCACTCCCTCACTCACTGTCAGAAACAAAAGCACCCGCCTTTACACCTTATCCACTGCCGTATGCCCTCCAAATGTCCGCCTTCCTCCTCCCCTCATCCGTCACTCCCTTCCACGCCTTACCCCGCAACTTCAAATGCCCCAACGACGCCGTTTCCCTCATCGTACACGCCTCGGCGGTCTCCGCCCCCGAGAAGCGAGATAGAAGGAAGCGGAGGCAGACCAAGGGCGACGACGACGACTCCTCTTCTTCTTCTTCCCCTTCCTCCTCCGCAGCCGAGAAGAACCTCCGCTTCGCTTTCATGGAGGAGCTCATGGTCCGGGCTCGCAATCGCGACGCCAATGGAGTCTCTGATGTCATTTACGACATGGTCGCCACCGGCCTCTTCCCCGGCCCTCGCTCCTTCCACGGCTTGATCGTAGCTCACGCTCTCAACGGAGACGCCGAGGGGGCGATGCAATCACTGAGAAGGGAATTGAGTACGGGGCTTCGGCCTCTCCACGAAACGTTCATTGCGCTGATTCGGCTGTTTGGATCAAAAGGTCGAGCTATAAGGGGATTAGAAATTCTTACTGCCATGGAGAAATTGCAATACGACATTCGCCAAGCTTGGCTTCTTCTTGTTGGTAAACTAATGAATTGCACATTATTTAGGGGTTGGGATTGCTTCTGGAAGGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAP

Protein Analysis

244

Amino Acids

26.96

Weight (kDa)

9.71

Isoelectric Point (pI)

58.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04260
fragaria_vesca	FvH4_6g01350 FvH4_6g01350 FvH4_6g01350 FvH4_6g01352
malus_domestica	MD04G1234900.v1.1
prunus_persica	Prupe.6G354700_v2.0.a1 Prupe.6G354700_v2.0.a1
pyrus_communis	pycom04g20830 pycom04g20860
rosa_chinensis	RchiOBHm_Chr3g0448921
rosa_laevigata	RLG00000025866
rosa_multiflora	Rmu_sc0003116.1_g000017
rosa_roxburghii	Rroxscaffold_6G00427100
rosa_rugosa	Rorug02G0617100
rosa_samantha	Rh3AG015500 Rh3BG015500 Rh3BG015600 Rh3CG014400 Rh3CG014600 Rh3DG015900
rosa_wichuraiana	Rw3G001150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	40, 48
AccII	CGCG	1 cut(s)	384
AclI	AACGTT	1 cut(s)	557
AclWI	GGATC	1 cut(s)	592
AcsI	RAATTY	2 cut(s)	19, 615
AcyI	GRCGYC	3 cut(s)	198, 387, 492
AfaI	GTAC	3 cut(s)	5, 216, 532
AgsI	TTSAA	1 cut(s)	184
AjuI	GAANNNNNNNTTGG	2 cut(s)	648, 680
AluBI	AGCT	4 cut(s)	361, 473, 599, 659
AluI	AGCT	4 cut(s)	361, 473, 599, 659
Alw21I	GWGCWC	1 cut(s)	363
Alw26I	GTCTC	3 cut(s)	235, 403, 483
AlwI	GGATC	1 cut(s)	592
Ama87I	CYCGRG	1 cut(s)	239
AoxI	GGCC	3 cut(s)	430, 442, 542
ApeKI	GCWGC	1 cut(s)	323
ApoI	RAATTY	2 cut(s)	19, 615
AspLEI	GCGC	1 cut(s)	568
AspS9I	GGNCC	2 cut(s)	367, 443
AsuC2I	CCSGG	2 cut(s)	371, 441
AsuII	TTCGAA	1 cut(s)	17
AvaI	CYCGRG	1 cut(s)	239
AvaII	GGWCC	1 cut(s)	367
BanII	GRGCYC	2 cut(s)	363, 376
Bbv12I	GWGCWC	1 cut(s)	363
BbvI	GCAGC	1 cut(s)	335
BccI	CCATC	1 cut(s)	16
BceAI	ACGGC	3 cut(s)	94, 185, 475
BcnI	CCSGG	2 cut(s)	371, 441
BcoDI	GTCTC	3 cut(s)	235, 403, 483
BglI	GCCNNNNNGGC	1 cut(s)	500
BisI	GCNGC	2 cut(s)	46, 324
BlpI	GCTNAGC	1 cut(s)	41
BlsI	GCNGC	2 cut(s)	47, 325
Bme1390I	CCNGG	2 cut(s)	371, 441
Bme18I	GGWCC	1 cut(s)	367
BmeT110I	CYCGRG	1 cut(s)	239
BmgT120I	GGNCC	2 cut(s)	367, 443
BmrFI	CCNGG	2 cut(s)	371, 441
BmsI	GCATC	1 cut(s)	495
Bpu1102I	GCTNAGC	1 cut(s)	41
Bpu14I	TTCGAA	1 cut(s)	17
BpuMI	CCSGG	2 cut(s)	371, 441
BsaHI	GRCGYC	3 cut(s)	198, 387, 492
BsaI	GGTCTC	1 cut(s)	235
BsaJI	CCNNGG	6 cut(s)	222, 273, 439, 457, 495, 627
BsaXI	ACNNNNNCTCC	2 cut(s)	275, 305
Bse118I	RCCGGY	1 cut(s)	428
Bse3DI	GCAATG	1 cut(s)	561
BseDI	CCNNGG	6 cut(s)	222, 273, 439, 457, 495, 627
BseGI	GGATG	1 cut(s)	146
BseMI	GCAATG	1 cut(s)	561
BseMII	CTCAG	2 cut(s)	55, 506
BseRI	GAGGAG	4 cut(s)	128, 283, 307, 371
BseXI	GCAGC	1 cut(s)	335
Bsh1236I	CGCG	1 cut(s)	384
BshFI	GGCC	3 cut(s)	432, 444, 544
BsiHKAI	GWGCWC	1 cut(s)	363
BsiHKCI	CYCGRG	1 cut(s)	239
BsiSI	CCGG	3 cut(s)	370, 429, 441
BsmAI	GTCTC	3 cut(s)	235, 403, 483
BsmBI	CGTCTC	1 cut(s)	483
BsnI	GGCC	3 cut(s)	432, 444, 544
Bso31I	GGTCTC	1 cut(s)	235
BsoBI	CYCGRG	1 cut(s)	239
Bsp119I	TTCGAA	1 cut(s)	17
Bsp1286I	GDGCHC	2 cut(s)	363, 376
Bsp143I	GATC	2 cut(s)	465, 584
Bsp1720I	GCTNAGC	1 cut(s)	41
Bsp19I	CCATGG	1 cut(s)	627
Bsp68I	TCGCGA	1 cut(s)	384
BspANI	GGCC	3 cut(s)	432, 444, 544
BspCNI	CTCAG	2 cut(s)	54, 507
BspFNI	CGCG	1 cut(s)	384
BspPI	GGATC	1 cut(s)	592
BspT104I	TTCGAA	1 cut(s)	17
BspTNI	GGTCTC	1 cut(s)	235
BsrBI	CCGCTC	2 cut(s)	40, 48
BsrDI	GCAATG	1 cut(s)	561
BsrFI	RCCGGY	1 cut(s)	428
BssAI	RCCGGY	1 cut(s)	428
BssECI	CCNNGG	6 cut(s)	222, 273, 439, 457, 495, 627
BssMI	GATC	2 cut(s)	465, 584
BssNI	GRCGYC	3 cut(s)	198, 387, 492
BssT1I	CCWWGG	2 cut(s)	273, 627
Bst4CI	ACNGT	1 cut(s)	69
Bst6I	CTCTTC	2 cut(s)	301, 440
BstACI	GRCGYC	3 cut(s)	198, 387, 492
BstBI	TTCGAA	1 cut(s)	17
BstC8I	GCNNGC	1 cut(s)	376
BstDEI	CTNAG	2 cut(s)	41, 515
BstDSI	CCRYGG	2 cut(s)	457, 627
BstF5I	GGATG	1 cut(s)	146
BstFNI	CGCG	1 cut(s)	384
BstHHI	GCGC	1 cut(s)	568
BstKTI	GATC	2 cut(s)	468, 587
BstMAI	GTCTC	3 cut(s)	235, 403, 483
BstMBI	GATC	2 cut(s)	465, 584
BstMWI	GCNNNNNNNGC	3 cut(s)	233, 500, 574
BstSCI	CCNGG	2 cut(s)	369, 439
BstUI	CGCG	1 cut(s)	384
BstV1I	GCAGC	1 cut(s)	335
BsuRI	GGCC	3 cut(s)	432, 444, 544
BtgI	CCRYGG	2 cut(s)	457, 627
BtgZI	GCGATG	1 cut(s)	518
BtsCI	GGATG	1 cut(s)	146
BtsI	GCAGTG	1 cut(s)	104
BtsIMutI	CAGTG	3 cut(s)	65, 104, 512
BtuMI	TCGCGA	1 cut(s)	384
Cac8I	GCNNGC	1 cut(s)	376
CfoI	GCGC	1 cut(s)	568
Cfr10I	RCCGGY	1 cut(s)	428
Cfr13I	GGNCC	2 cut(s)	367, 443
CseI	GACGC	3 cut(s)	206, 395, 500
Csp6I	GTAC	3 cut(s)	4, 215, 531
CviAII	CATG	4 cut(s)	352, 364, 418, 628
CviQI	GTAC	3 cut(s)	4, 215, 531
DdeI	CTNAG	2 cut(s)	41, 515
DpnI	GATC	2 cut(s)	467, 586
DpnII	GATC	2 cut(s)	465, 584
Eam1104I	CTCTTC	2 cut(s)	301, 440
EarI	CTCTTC	2 cut(s)	301, 440
EciI	GGCGGA	2 cut(s)	118, 223
Ecl136II	GAGCTC	1 cut(s)	361
Eco130I	CCWWGG	2 cut(s)	273, 627
Eco24I	GRGCYC	2 cut(s)	363, 376
Eco31I	GGTCTC	1 cut(s)	235
Eco47I	GGWCC	1 cut(s)	367
Eco53kI	GAGCTC	1 cut(s)	361
Eco88I	CYCGRG	1 cut(s)	239
EcoICRI	GAGCTC	1 cut(s)	361
EcoRI	GAATTC	1 cut(s)	19
EcoT14I	CCWWGG	2 cut(s)	273, 627
EcoT38I	GRGCYC	2 cut(s)	363, 376
ErhI	CCWWGG	2 cut(s)	273, 627
Esp3I	CGTCTC	1 cut(s)	483
FaeI	CATG	4 cut(s)	355, 367, 421, 631
FaiI	YATR	6 cut(s)	114, 353, 365, 419, 602, 629
FalI	AAGNNNNNCTT	2 cut(s)	648, 680
FatI	CATG	4 cut(s)	351, 363, 417, 627
FauI	CCCGC	3 cut(s)	45, 94, 182
Fnu4HI	GCNGC	2 cut(s)	46, 324
FokI	GGATG	1 cut(s)	133
FriOI	GRGCYC	2 cut(s)	363, 376
Fsp4HI	GCNGC	2 cut(s)	46, 324
GlaI	GCGC	1 cut(s)	567
GluI	GCNGC	2 cut(s)	46, 324
HaeIII	GGCC	3 cut(s)	432, 444, 544
HapII	CCGG	3 cut(s)	370, 429, 441
HgaI	GACGC	3 cut(s)	206, 395, 500
HhaI	GCGC	1 cut(s)	568
Hin1I	GRCGYC	3 cut(s)	198, 387, 492
Hin1II	CATG	4 cut(s)	355, 367, 421, 631
Hin6I	GCGC	1 cut(s)	566
HinP1I	GCGC	1 cut(s)	566
HindIII	AAGCTT	1 cut(s)	657
HinfI	GANTC	3 cut(s)	290, 396, 571
HpaII	CCGG	3 cut(s)	370, 429, 441
Hpy166II	GTNNAC	2 cut(s)	217, 680
Hpy188I	TCNGA	2 cut(s)	73, 403
Hpy188III	TCNNGA	2 cut(s)	383, 721
Hpy8I	GTNNAC	2 cut(s)	217, 680
Hpy99I	CGWCG	5 cut(s)	200, 284, 287, 290, 389
HpyAV	CCTTC	7 cut(s)	142, 169, 249, 321, 463, 513, 718
HpyCH4III	ACNGT	1 cut(s)	69
HpyCH4IV	ACGT	1 cut(s)	557
HpyCH4V	TGCA	3 cut(s)	508, 640, 693
HpyF10VI	GCNNNNNNNGC	3 cut(s)	233, 500, 574
HpyF3I	CTNAG	2 cut(s)	41, 515
HpySE526I	ACGT	1 cut(s)	557
Hsp92I	GRCGYC	3 cut(s)	198, 387, 492
Hsp92II	CATG	4 cut(s)	355, 367, 421, 631
HspAI	GCGC	1 cut(s)	566
Kzo9I	GATC	2 cut(s)	465, 584
LmnI	GCTCC	2 cut(s)	358, 455
LpnPI	CCDG	4 cut(s)	383, 442, 454, 706
Lsp1109I	GCAGC	1 cut(s)	335
LweI	GCATC	1 cut(s)	495
MaeII	ACGT	1 cut(s)	557
MaeIII	GTNAC	2 cut(s)	51, 151
MalI	GATC	2 cut(s)	467, 586
MbiI	CCGCTC	2 cut(s)	40, 48
MboI	GATC	2 cut(s)	465, 584
MboII	GAAGA	7 cut(s)	288, 291, 294, 297, 343, 427, 659
MhlI	GDGCHC	2 cut(s)	363, 376
MluCI	AATT	5 cut(s)	19, 524, 615, 635, 688
MlyI	GAGTC	2 cut(s)	284, 405
MseI	TTAA	1 cut(s)	27
MspI	CCGG	3 cut(s)	370, 429, 441
MspR9I	CCNGG	2 cut(s)	371, 441
MvnI	CGCG	1 cut(s)	384
MwoI	GCNNNNNNNGC	3 cut(s)	233, 500, 574
NciI	CCSGG	2 cut(s)	371, 441
NcoI	CCATGG	1 cut(s)	627
NdeII	GATC	2 cut(s)	465, 584
NlaIII	CATG	4 cut(s)	355, 367, 421, 631
NmeAIII	GCCGAG	3 cut(s)	203, 352, 520
NmuCI	GTSAC	2 cut(s)	51, 151
NruI	TCGCGA	1 cut(s)	384
NspV	TTCGAA	1 cut(s)	17
PcsI	WCGNNNNNNNCGW	2 cut(s)	465, 492
PfeI	GAWTC	1 cut(s)	571
PflFI	GACNNNGTC	1 cut(s)	419
PkrI	GCNGC	2 cut(s)	47, 325
PleI	GAGTC	2 cut(s)	284, 404
PpsI	GAGTC	2 cut(s)	284, 404
Psp124BI	GAGCTC	1 cut(s)	363
Psp1406I	AACGTT	1 cut(s)	557
PspPI	GGNCC	2 cut(s)	367, 443
PsyI	GACNNNGTC	1 cut(s)	419
RruI	TCGCGA	1 cut(s)	384
RsaI	GTAC	3 cut(s)	5, 216, 532
RsaNI	GTAC	3 cut(s)	4, 215, 531
SacI	GAGCTC	1 cut(s)	363
SaqAI	TTAA	1 cut(s)	27
SatI	GCNGC	2 cut(s)	46, 324
Sau3AI	GATC	2 cut(s)	465, 584
Sau96I	GGNCC	2 cut(s)	367, 443
SchI	GAGTC	2 cut(s)	284, 405
ScrFI	CCNGG	2 cut(s)	371, 441
SduI	GDGCHC	2 cut(s)	363, 376
SetI	ASST	8 cut(s)	100, 339, 363, 475, 560, 595, 601, 661
SfaNI	GCATC	1 cut(s)	495
SfuI	TTCGAA	1 cut(s)	17
SinI	GGWCC	1 cut(s)	367
Sse9I	AATT	5 cut(s)	19, 524, 615, 635, 688
SstI	GAGCTC	1 cut(s)	363
StyD4I	CCNGG	2 cut(s)	369, 439
StyI	CCWWGG	2 cut(s)	273, 627
TaaI	ACNGT	1 cut(s)	69
TaiI	ACGT	1 cut(s)	560
TaqI	TCGA	2 cut(s)	17, 595
TasI	AATT	5 cut(s)	19, 524, 615, 635, 688
TauI	GCSGC	1 cut(s)	48
TfiI	GAWTC	1 cut(s)	571
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27
TscAI	CASTG	3 cut(s)	72, 111, 519
TseFI	GTSAC	2 cut(s)	51, 151
TseI	GCWGC	1 cut(s)	323
Tsp45I	GTSAC	2 cut(s)	51, 151
TspDTI	ATGAA	3 cut(s)	340, 550, 701
TspGWI	ACGGA	2 cut(s)	139, 501
TspRI	CASTG	3 cut(s)	72, 111, 519
Tth111I	GACNNNGTC	1 cut(s)	419
VpaK11BI	GGWCC	1 cut(s)	367
XapI	RAATTY	2 cut(s)	19, 615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.