Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0009319

Physical Location & Seq

Genomic Coordinates Forward (+)

31401873 .. 31407940

Gene Structure 6068 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1234900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2691 bp

ATGTCCGCCTTCCTCCTCCCCTCCTCCGTCACTTCCTTCCCCGCCTTCTCCCGCAACTTCAAATGCCCCAACGACGCCGTTTCCCTCGTCGTACGCGCCTCGGCGGTCTCCGCCCCCGAGAAGAGAGTTAGAAGGAAGCGGAGGCAGACCAAGGGCGACGACGACTCCTCTTCTCCTTCCCCTTCCTCCTCCGCCGCCGAGAAGAACCTCCGCTTCGCTTTCATGGAGGAGCTCATGGTCCGGGCTCGCAATCGCGACGCCGATGGAGTCTCTGATGTCATTTACGACATGGTCGCCGCCGGCCTCGCCCCCGGCCCTCGCTCCTTCCACGGCTTGATCGTAGCTCACGCTCTCAACGGAGACGCCGAGGGGGCGATGCAATCACTGAGAAGGGAATTGAGTACGGGGCTTCGGCCTCTCCATGAAACGTTCATTGCGCTGATTCGGCTGTTTGGATCAAAAGGTCGAGCTATAAGGGGATTAGAAATTCTTGCTGCCATGGAGAAATTGCAATACGACATTCGCCAAGCTTGGCTTCTTCTTGTTGAGGAGCTCGTTCGGACCCGCCATTTAGAAGATGCCAACAAAGTGTTCTTGAAGGGTGCCAAAGGTGGGCTCAGAGCAACTGATGAGGTCTACGATCTTCTTATTGTGGAGGATTGTAAAGCTGGGGATCATTCTAATGCATTGGATATTGCCTATGAAATGGAGGCTGCAGGGCGGATGGCAACAACCTTTCATTTCAATTGTCTTCTTAGTGTGCAGGCTACTTGCGGAATTCCTGAAATAGCATTTGCTACGTTTGAGAACATGGAGTATGGAGATGAACACATGAAACCTGATACAGAGACATATAATTGGGTGATCCAAGCATATACCAGAGCTGAATCTTATGACAGAGTACAAGATGTTGCTGAGTTACTTGGCATGATGGTTGAAGACCACAAGCGTTTGCAGCCTAATATGAAAACCCATGCGTTGTTAGTTGAGTGCTTTACAAAGTATTGTGTAGTTCGAGAGGCAATACGGCATTTTCGTGCCCTCATAAGATTTGAAGGAGGAACAAAAGCTTTACATAATGAAGGAAACTTTGGGGACCCCCTGTCTTTGTATCTTCGAGCTTTATGTCGAGAAGGAAGAATGGTCGAGTTGCTAGAAGCTTTAGAAGCCATGGCCGCGGACGACCAAACAATTCCACCACGAGCTATGATTTTGAGTAGAAAGTACCGGACACTGGTGAGCTCATGGATTGAACCTTTGCAAGAGGAAGCTGAACTTGGACATGAGATAGATTACATGGCCAGGTACATTGCAGAGGGTGGGCTTACCGGTGAGCGCAAGCGATGGGTGCCTCGAAGAGGGAAAACTCCACTAGATCCTGATGTTGATGGGTTTATATATTCAAACCCTATTGAAACCTCATTCAAGCAAAGATGTCTTGAGGAGTGGAAGATACACCACAGAAAGCTTTTGAGAACGCTACGAAATGAAGGAGTTGCAGCTTTAGGAGATGACGCCTCTGAGTCAGATTATGTTAGAGTTGAGATGAGGTTAAGGAAAATTATAAAGGGCCCTGACACGAATGTTTTAAAGCCCAAGGCTGCTAGTAAGATGGTTGTATCTGAATTGAAAGAAGAACTAGAAGCACAAGGTCTGCCAACTGATGGTACCAGAAATGTTCTCTACCAGCGTGTCCAAAAAGCAAGGAGAATAAACCGCTCTCGTGGTCGACCCCTCTGGGTTCCTCCTGTGGAGGAGGAAGAAGAAGAGGTTGATGAAGAGCTTGATGAACTAATCTCACGTATCAAGCTAGAAGAAGGAAATACAGAGTTCTGGAAGCGCCGTTTCATGGGAGAAGGCTTGGGTACTGATCAAGAAAAGGCTCTAGATGTTTCGGATAGTGCCACTGTTGATGATGTTGCAAAAGATGTGGAGAATGACGAAGCTGACGATGATGATGACGAAGACGATGATAATGAGGATGATGATGATGATGACGACGATGAGGAGGAGGAGGAAGAAGAGGAGGTAGAGGCAGAGGTAGAGGTAGAACAAGCTGAGAGACAGGATGTAGAAAGAGTTAAGGAAAAAGAAATTGAAGCCAAGAAACCTCTTCAAATGATTGGAGTGCAGTTATTGAAAGATTCTGACCAAACAAGTACGACATCTAAAAAAGCAAGGAGAAGATCTCGAATGTCAGCTGAGGATGATAATGACGATGACTGGTTTCCTGAGGACATATTCGAGGCATTTAAGGAGCTGAGGAAAAGGAAAGTTTTTGACGAATCTGACATGTACACGCTAGCTGATGCTTGGGGTTGGACGTGGGAAAAAGAATTGAAGAACAGAGCTCCTAGAAGATGGTCACAGGAATGGGAAGTTGAGCTGGCGATTAAAATTATGATGAAGGTGATGGAATTGGGTGGAACACCCACCATTGGTGATTGTGCCATGATTTTGCGTGCAGCGGTAAGGGCTCCTTTGCCGTCAGCTTTCTTGAAGATCTTACAGACGACGCATAGTCTTGGTTATGTATTCGGCAGTCCTCTTTACGATGAAATCATCTCGCTGTGTCTTGATCTCGGGGAGCTAGATGCAGCCGTTGCAATTGTTGCAGACATGGAGACGACCGGAATCACAGTCCCAGACGAGACATTGGACAGGGTGATTTCTGCTAAGCGGACAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAP

Protein Analysis

897

Amino Acids

101.63

Weight (kDa)

4.83

Isoelectric Point (pI)

48.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAP	PF02037	536 - 569	3e-09	SAP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04260
fragaria_vesca	FvH4_6g01350 FvH4_6g01350 FvH4_6g01350 FvH4_6g01352
malus_domestica	MD04G1234900.v1.1
prunus_persica	Prupe.6G354700_v2.0.a1 Prupe.6G354700_v2.0.a1
pyrus_communis	pycom04g20830 pycom04g20860
rosa_chinensis	RchiOBHm_Chr3g0448921
rosa_laevigata	RLG00000025866
rosa_multiflora	Rmu_sc0003116.1_g000017
rosa_roxburghii	Rroxscaffold_6G00427100
rosa_rugosa	Rorug02G0617100
rosa_samantha	Rh3AG015500 Rh3BG015500 Rh3BG015600 Rh3CG014400 Rh3CG014600 Rh3DG015900
rosa_wichuraiana	Rw3G001150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1565
Acc65I	GGTACC	1 cut(s)	1667
AccB1I	GGYRCC	3 cut(s)	602, 1348, 1667
AccB7I	CCANNNNNTGG	1 cut(s)	1664
AccBSI	CCGCTC	1 cut(s)	1719
AccI	GTMKAC	2 cut(s)	636, 1729
AccII	CGCG	3 cut(s)	96, 255, 1178
AclI	AACGTT	1 cut(s)	428
AclWI	GGATC	4 cut(s)	463, 681, 859, 1370
AcoI	YGGCCR	2 cut(s)	1173, 1299
AcsI	RAATTY	2 cut(s)	486, 777
AcyI	GRCGYC	4 cut(s)	75, 258, 363, 1515
AfaI	GTAC	9 cut(s)	93, 403, 903, 1226, 1307, 1669, 1867, 2161, 2297
AfiI	CCNNNNNNNGG	6 cut(s)	612, 1234, 1358, 1664, 1849, 2438
AflIII	ACRYGT	1 cut(s)	2292
AgeI	ACCGGT	1 cut(s)	1328
AhdI	GACNNNNNGTC	2 cut(s)	1102, 2520
AjiI	CACGTC	1 cut(s)	2325
AjnI	CCWGG	1 cut(s)	1301
AjuI	GAANNNNNNNTTGG	8 cut(s)	519, 551, 575, 607, 1074, 1106, 1260, 1292
Alw21I	GWGCWC	4 cut(s)	234, 555, 1244, 2353
Alw26I	GTCTC	7 cut(s)	112, 274, 354, 842, 2056, 2618, 2645
AlwI	GGATC	4 cut(s)	463, 681, 859, 1370
Ama87I	CYCGRG	2 cut(s)	116, 2582
AoxI	GGCC	6 cut(s)	301, 313, 413, 1173, 1299, 1570
ApaI	GGGCCC	1 cut(s)	1574
ApeKI	GCWGC	7 cut(s)	494, 713, 955, 1499, 1601, 2465, 2597
ApoI	RAATTY	2 cut(s)	486, 777
AsiGI	ACCGGT	1 cut(s)	1328
Asp718I	GGTACC	1 cut(s)	1667
AspLEI	GCGC	4 cut(s)	98, 439, 1338, 1842
AspS9I	GGNCC	6 cut(s)	238, 314, 561, 1096, 1570, 1571
AsuC2I	CCSGG	2 cut(s)	242, 312
AsuHPI	GGTGA	6 cut(s)	874, 1249, 1343, 2422, 2453, 2677
AsuNHI	GCTAGC	1 cut(s)	2302
AvaI	CYCGRG	2 cut(s)	116, 2582
AvaII	GGWCC	3 cut(s)	238, 561, 1096
AxyI	CCTNAGG	1 cut(s)	2232
BaeGI	GKGCMC	2 cut(s)	1042, 1574
BalI	TGGCCA	1 cut(s)	1301
BanI	GGYRCC	3 cut(s)	602, 1348, 1667
BanII	GRGCYC	8 cut(s)	234, 247, 555, 618, 1244, 1574, 2353, 2479
BauI	CACGAG	2 cut(s)	1200, 1722
BbsI	GAAGAC	3 cut(s)	743, 945, 1971
Bbv12I	GWGCWC	4 cut(s)	234, 555, 1244, 2353
BbvCI	CCTCAGC	2 cut(s)	2202, 2261
BbvI	GCAGC	7 cut(s)	481, 700, 967, 1511, 1588, 2477, 2609
BccI	CCATC	9 cut(s)	257, 718, 925, 1338, 1382, 1606, 1658, 2355, 2407
BceAI	ACGGC	6 cut(s)	62, 346, 1043, 1827, 2470, 2585
BciT130I	CCWGG	1 cut(s)	1303
BclI	TGATCA	1 cut(s)	1870
BcnI	CCSGG	2 cut(s)	242, 312
BcoDI	GTCTC	7 cut(s)	112, 274, 354, 842, 2056, 2618, 2645
BfaI	CTAG	9 cut(s)	1154, 1373, 1605, 1640, 1811, 1886, 2303, 2355, 2591
BfmI	CTRYAG	1 cut(s)	714
BfoI	RGCGCY	1 cut(s)	1843
BglI	GCCNNNNNGGC	1 cut(s)	371
BglII	AGATCT	2 cut(s)	2186, 2502
BlpI	GCTNAGC	1 cut(s)	2676
Bme1390I	CCNGG	3 cut(s)	242, 312, 1303
Bme18I	GGWCC	3 cut(s)	238, 561, 1096
BmeRI	GACNNNNNGTC	2 cut(s)	1102, 2520
BmeT110I	CYCGRG	2 cut(s)	116, 2582
BmgBI	CACGTC	1 cut(s)	2325
BmgT120I	GGNCC	6 cut(s)	238, 314, 561, 1096, 1570, 1571
BmiI	GGNNCC	9 cut(s)	563, 604, 1097, 1098, 1350, 1572, 1669, 1743, 2478
BmrFI	CCNGG	3 cut(s)	242, 312, 1303
BmsI	GCATC	4 cut(s)	366, 568, 2299, 2584
BmtI	GCTAGC	1 cut(s)	2306
BpiI	GAAGAC	3 cut(s)	743, 945, 1971
BplI	GAGNNNNNCTC	2 cut(s)	2173, 2205
Bpu10I	CCTNAGC	2 cut(s)	2202, 2261
Bpu1102I	GCTNAGC	1 cut(s)	2676
BpuEI	CTTGAG	1 cut(s)	1460
BpuMI	CCSGG	2 cut(s)	242, 312
BsaAI	YACGTR	1 cut(s)	1802
BsaHI	GRCGYC	4 cut(s)	75, 258, 363, 1515
BsaI	GGTCTC	1 cut(s)	112
BsaJI	CCNNGG	9 cut(s)	99, 150, 310, 328, 366, 498, 1170, 1176, 1596
BsaWI	WCCGGW	3 cut(s)	1227, 1328, 2630
BsaXI	ACNNNNNCTCC	2 cut(s)	149, 179
Bsc4I	CCNNNNNNNGG	6 cut(s)	612, 1234, 1358, 1664, 1849, 2438
Bse118I	RCCGGY	2 cut(s)	299, 1328
Bse1I	ACTGG	2 cut(s)	1239, 2228
Bse21I	CCTNAGG	1 cut(s)	2232
Bse3DI	GCAATG	2 cut(s)	432, 1308
BseBI	CCWGG	1 cut(s)	1303
BseDI	CCNNGG	9 cut(s)	99, 150, 310, 328, 366, 498, 1170, 1176, 1596
BseGI	GGATG	4 cut(s)	729, 1987, 2074, 2212
BseLI	CCNNNNNNNGG	6 cut(s)	612, 1234, 1358, 1664, 1849, 2438
BseMI	GCAATG	2 cut(s)	432, 1308
BseMII	CTCAG	8 cut(s)	377, 631, 906, 1512, 2049, 2193, 2223, 2252
BseNI	ACTGG	2 cut(s)	1239, 2228
BseSI	GKGCMC	2 cut(s)	1042, 1574
BseXI	GCAGC	7 cut(s)	481, 700, 967, 1511, 1588, 2477, 2609
BseYI	CCCAGC	1 cut(s)	668
BsgI	GTGCAG	3 cut(s)	782, 2150, 2484
Bsh1236I	CGCG	3 cut(s)	96, 255, 1178
Bsh1285I	CGRYCG	1 cut(s)	2631
BshFI	GGCC	6 cut(s)	303, 315, 415, 1175, 1301, 1572
BshNI	GGYRCC	3 cut(s)	602, 1348, 1667
BshTI	ACCGGT	1 cut(s)	1328
BsiEI	CGRYCG	1 cut(s)	2631
BsiHKAI	GWGCWC	4 cut(s)	234, 555, 1244, 2353
BsiHKCI	CYCGRG	2 cut(s)	116, 2582
BsiSI	CCGG	6 cut(s)	241, 300, 312, 1228, 1329, 2631
BsiWI	CGTACG	1 cut(s)	91
BslFI	GGGAC	2 cut(s)	1109, 2627
BslI	CCNNNNNNNGG	6 cut(s)	612, 1234, 1358, 1664, 1849, 2438
BsmAI	GTCTC	7 cut(s)	112, 274, 354, 842, 2056, 2618, 2645
BsmBI	CGTCTC	2 cut(s)	354, 2618
BsmFI	GGGAC	2 cut(s)	1109, 2627
BsnI	GGCC	6 cut(s)	303, 315, 415, 1175, 1301, 1572
Bso31I	GGTCTC	1 cut(s)	112
BsoBI	CYCGRG	2 cut(s)	116, 2582
Bsp120I	GGGCCC	1 cut(s)	1570
Bsp1286I	GDGCHC	9 cut(s)	234, 247, 555, 618, 1042, 1244, 1574, 2353, 2479
Bsp1407I	TGTACA	1 cut(s)	2295
Bsp1720I	GCTNAGC	1 cut(s)	2676
Bsp19I	CCATGG	2 cut(s)	498, 1170
Bsp68I	TCGCGA	1 cut(s)	255
BspANI	GGCC	6 cut(s)	303, 315, 415, 1175, 1301, 1572
BspCNI	CTCAG	8 cut(s)	378, 630, 907, 1513, 2050, 2194, 2224, 2253
BspFNI	CGCG	3 cut(s)	96, 255, 1178
BspLI	GGNNCC	9 cut(s)	563, 604, 1097, 1098, 1350, 1572, 1669, 1743, 2478
BspMAI	CTGCAG	1 cut(s)	718
BspOI	GCTAGC	1 cut(s)	2306
BspPI	GGATC	4 cut(s)	463, 681, 859, 1370
BspQI	GCTCTTC	1 cut(s)	1773
BspT107I	GGYRCC	3 cut(s)	602, 1348, 1667
BspTNI	GGTCTC	1 cut(s)	112
BsrBI	CCGCTC	1 cut(s)	1719
BsrDI	GCAATG	2 cut(s)	432, 1308
BsrFI	RCCGGY	2 cut(s)	299, 1328
BsrGI	TGTACA	1 cut(s)	2295
BsrI	ACTGG	2 cut(s)	1239, 2228
BssAI	RCCGGY	2 cut(s)	299, 1328
BssECI	CCNNGG	9 cut(s)	99, 150, 310, 328, 366, 498, 1170, 1176, 1596
BssNI	GRCGYC	4 cut(s)	75, 258, 363, 1515
BssSI	CACGAG	2 cut(s)	1200, 1722
BssT1I	CCWWGG	4 cut(s)	150, 498, 1170, 1596
Bst2BI	CACGAG	2 cut(s)	1200, 1722
Bst2UI	CCWGG	1 cut(s)	1303
Bst4CI	ACNGT	2 cut(s)	1909, 2641
Bst6I	CTCTTC	7 cut(s)	116, 175, 1351, 1761, 1773, 2016, 2118
BstACI	GRCGYC	4 cut(s)	75, 258, 363, 1515
BstAPI	GCANNNNNTGC	2 cut(s)	2603, 2612
BstAUI	TGTACA	1 cut(s)	2295
BstBAI	YACGTR	1 cut(s)	1802
BstC8I	GCNNGC	7 cut(s)	247, 301, 765, 1340, 2304, 2388, 2463
BstDSI	CCRYGG	4 cut(s)	328, 498, 1170, 1176
BstENI	CCTNNNNNAGG	1 cut(s)	1356
BstF5I	GGATG	4 cut(s)	729, 1987, 2074, 2212
BstFNI	CGCG	3 cut(s)	96, 255, 1178
BstH2I	RGCGCY	1 cut(s)	1843
BstHHI	GCGC	4 cut(s)	98, 439, 1338, 1842
BstMAI	GTCTC	7 cut(s)	112, 274, 354, 842, 2056, 2618, 2645
BstMCI	CGRYCG	1 cut(s)	2631
BstNI	CCWGG	1 cut(s)	1303
BstNSI	RCATGY	1 cut(s)	2296
BstSCI	CCNGG	3 cut(s)	240, 310, 1301
BstSFI	CTRYAG	1 cut(s)	714
BstSLI	GKGCMC	2 cut(s)	1042, 1574
BstUI	CGCG	3 cut(s)	96, 255, 1178
BstV1I	GCAGC	7 cut(s)	481, 700, 967, 1511, 1588, 2477, 2609
BstV2I	GAAGAC	3 cut(s)	743, 945, 1971
BstX2I	RGATCY	3 cut(s)	1375, 2186, 2502
BstYI	RGATCY	3 cut(s)	1375, 2186, 2502
Bsu36I	CCTNAGG	1 cut(s)	2232
BsuRI	GGCC	6 cut(s)	303, 315, 415, 1175, 1301, 1572
BtgI	CCRYGG	4 cut(s)	328, 498, 1170, 1176
BtgZI	GCGATG	2 cut(s)	389, 1357
BtrI	CACGTC	1 cut(s)	2325
BtsCI	GGATG	4 cut(s)	729, 1987, 2074, 2212
BtsIMutI	CAGTG	3 cut(s)	383, 1232, 1905
BtuMI	TCGCGA	1 cut(s)	255
Cac8I	GCNNGC	7 cut(s)	247, 301, 765, 1340, 2304, 2388, 2463
CfoI	GCGC	4 cut(s)	98, 439, 1338, 1842
Cfr10I	RCCGGY	2 cut(s)	299, 1328
Cfr13I	GGNCC	6 cut(s)	238, 314, 561, 1096, 1570, 1571
Cfr42I	CCGCGG	1 cut(s)	1179
CseI	GACGC	5 cut(s)	83, 266, 371, 1523, 2524
Csp6I	GTAC	9 cut(s)	92, 402, 902, 1225, 1306, 1668, 1866, 2160, 2296
CspAI	ACCGGT	1 cut(s)	1328
CspCI	CAANNNNNGTGG	2 cut(s)	1911, 1946
CviQI	GTAC	9 cut(s)	92, 402, 902, 1225, 1306, 1668, 1866, 2160, 2296
DraI	TTTAAA	1 cut(s)	1590
DriI	GACNNNNNGTC	2 cut(s)	1102, 2520
EaeI	YGGCCR	2 cut(s)	1173, 1299
Eam1104I	CTCTTC	7 cut(s)	116, 175, 1351, 1761, 1773, 2016, 2118
Eam1105I	GACNNNNNGTC	2 cut(s)	1102, 2520
EarI	CTCTTC	7 cut(s)	116, 175, 1351, 1761, 1773, 2016, 2118
EciI	GGCGGA	3 cut(s)	100, 181, 736
Ecl136II	GAGCTC	4 cut(s)	232, 553, 1242, 2351
Eco130I	CCWWGG	4 cut(s)	150, 498, 1170, 1596
Eco24I	GRGCYC	8 cut(s)	234, 247, 555, 618, 1244, 1574, 2353, 2479
Eco31I	GGTCTC	1 cut(s)	112
Eco47I	GGWCC	3 cut(s)	238, 561, 1096
Eco53kI	GAGCTC	4 cut(s)	232, 553, 1242, 2351
Eco81I	CCTNAGG	1 cut(s)	2232
Eco88I	CYCGRG	2 cut(s)	116, 2582
EcoICRI	GAGCTC	4 cut(s)	232, 553, 1242, 2351
EcoNI	CCTNNNNNAGG	1 cut(s)	1356
EcoO109I	RGGNCCY	3 cut(s)	1096, 1570, 1571
EcoRI	GAATTC	1 cut(s)	777
EcoRII	CCWGG	1 cut(s)	1301
EcoT14I	CCWWGG	4 cut(s)	150, 498, 1170, 1596
EcoT22I	ATGCAT	1 cut(s)	688
EcoT38I	GRGCYC	8 cut(s)	234, 247, 555, 618, 1244, 1574, 2353, 2479
ErhI	CCWWGG	4 cut(s)	150, 498, 1170, 1596
Esp3I	CGTCTC	2 cut(s)	354, 2618
FalI	AAGNNNNNCTT	6 cut(s)	519, 551, 1260, 1292, 2464, 2496
FaqI	GGGAC	2 cut(s)	1109, 2627
FauI	CCCGC	3 cut(s)	49, 59, 572
FbaI	TGATCA	1 cut(s)	1870
FblI	GTMKAC	2 cut(s)	636, 1729
FokI	GGATG	4 cut(s)	736, 1994, 2081, 2219
FriOI	GRGCYC	8 cut(s)	234, 247, 555, 618, 1244, 1574, 2353, 2479
FspBI	CTAG	9 cut(s)	1154, 1373, 1605, 1640, 1811, 1886, 2303, 2355, 2591
GlaI	GCGC	4 cut(s)	97, 438, 1337, 1841
GsaI	CCCAGC	1 cut(s)	672
HaeII	RGCGCY	1 cut(s)	1843
HaeIII	GGCC	6 cut(s)	303, 315, 415, 1175, 1301, 1572
HapII	CCGG	6 cut(s)	241, 300, 312, 1228, 1329, 2631
HgaI	GACGC	5 cut(s)	83, 266, 371, 1523, 2524
HhaI	GCGC	4 cut(s)	98, 439, 1338, 1842
Hin1I	GRCGYC	4 cut(s)	75, 258, 363, 1515
Hin6I	GCGC	4 cut(s)	96, 437, 1336, 1840
HinP1I	GCGC	4 cut(s)	96, 437, 1336, 1840
HincII	GTYRAC	1 cut(s)	1730
HindII	GTYRAC	1 cut(s)	1730
HindIII	AAGCTT	4 cut(s)	528, 1068, 1158, 1466
HinfI	GANTC	8 cut(s)	164, 267, 442, 887, 1523, 2144, 2285, 2634
HpaII	CCGG	6 cut(s)	241, 300, 312, 1228, 1329, 2631
HphI	GGTGA	6 cut(s)	874, 1249, 1343, 2422, 2453, 2677
Hpy166II	GTNNAC	3 cut(s)	637, 1730, 2298
Hpy188I	TCNGA	9 cut(s)	274, 561, 620, 1522, 1528, 1624, 1897, 2149, 2290
Hpy8I	GTNNAC	3 cut(s)	637, 1730, 2298
Hpy99I	CGWCG	7 cut(s)	77, 92, 161, 164, 260, 2003, 2518
HpyCH4III	ACNGT	2 cut(s)	1909, 2641
HpyCH4IV	ACGT	4 cut(s)	428, 800, 1801, 2324
HpySE526I	ACGT	4 cut(s)	428, 800, 1801, 2324
Hsp92I	GRCGYC	4 cut(s)	75, 258, 363, 1515
HspAI	GCGC	4 cut(s)	96, 437, 1336, 1840
KflI	GGGWCCC	1 cut(s)	1096
KpnI	GGTACC	1 cut(s)	1671
KroI	GCCGGC	1 cut(s)	299
KroNI	GCCGGC	1 cut(s)	301
Ksp22I	TGATCA	1 cut(s)	1870
KspI	CCGCGG	1 cut(s)	1179
LguI	GCTCTTC	1 cut(s)	1773
LmnI	GCTCC	7 cut(s)	229, 326, 550, 2257, 2356, 2482, 2587
Lsp1109I	GCAGC	7 cut(s)	481, 700, 967, 1511, 1588, 2477, 2609
LweI	GCATC	4 cut(s)	366, 568, 2299, 2584
MaeI	CTAG	9 cut(s)	1154, 1373, 1605, 1640, 1811, 1886, 2303, 2355, 2591
MaeII	ACGT	4 cut(s)	428, 800, 1801, 2324
MaeIII	GTNAC	3 cut(s)	28, 918, 2364
MbiI	CCGCTC	1 cut(s)	1719
MfeI	CAATTG	2 cut(s)	745, 2607
MflI	RGATCY	3 cut(s)	1375, 2186, 2502
MhlI	GDGCHC	9 cut(s)	234, 247, 555, 618, 1042, 1244, 1574, 2353, 2479
MlsI	TGGCCA	1 cut(s)	1301
MluNI	TGGCCA	1 cut(s)	1301
MlyI	GAGTC	3 cut(s)	158, 276, 1532
MmeI	TCCRAC	1 cut(s)	2300
Mox20I	TGGCCA	1 cut(s)	1301
Mph1103I	ATGCAT	1 cut(s)	688
MroNI	GCCGGC	1 cut(s)	299
MscI	TGGCCA	1 cut(s)	1301
MseI	TTAA	5 cut(s)	1553, 1589, 2082, 2253, 2394
MslI	CAYNNNNRTG	3 cut(s)	681, 1035, 2371
Msp20I	TGGCCA	1 cut(s)	1301
MspA1I	CMGCKG	3 cut(s)	1178, 2201, 2468
MspI	CCGG	6 cut(s)	241, 300, 312, 1228, 1329, 2631
MspR9I	CCNGG	3 cut(s)	242, 312, 1303
MunI	CAATTG	2 cut(s)	745, 2607
MvaI	CCWGG	1 cut(s)	1303
MvnI	CGCG	3 cut(s)	96, 255, 1178
NaeI	GCCGGC	1 cut(s)	301
NciI	CCSGG	2 cut(s)	242, 312
NcoI	CCATGG	2 cut(s)	498, 1170
NgoMIV	GCCGGC	1 cut(s)	299
NheI	GCTAGC	1 cut(s)	2302
NlaIV	GGNNCC	9 cut(s)	563, 604, 1097, 1098, 1350, 1572, 1669, 1743, 2478
NmeAIII	GCCGAG	3 cut(s)	80, 223, 391
NmuCI	GTSAC	2 cut(s)	28, 2364
NruI	TCGCGA	1 cut(s)	255
NsiI	ATGCAT	1 cut(s)	688
NspI	RCATGY	1 cut(s)	2296
PciI	ACATGT	1 cut(s)	2292
PciSI	GCTCTTC	1 cut(s)	1773
PcsI	WCGNNNNNNNCGW	4 cut(s)	336, 363, 1033, 1947
PdiI	GCCGGC	1 cut(s)	301
PfeI	GAWTC	5 cut(s)	442, 887, 2144, 2285, 2634
Pfl23II	CGTACG	1 cut(s)	91
PflFI	GACNNNGTC	1 cut(s)	290
PflMI	CCANNNNNTGG	1 cut(s)	1664
PinAI	ACCGGT	1 cut(s)	1328
PleI	GAGTC	3 cut(s)	158, 275, 1531
PpsI	GAGTC	3 cut(s)	158, 275, 1531
Ppu21I	YACGTR	1 cut(s)	1802
PpuMI	RGGWCCY	1 cut(s)	1096
PscI	ACATGT	1 cut(s)	2292
PsiI	TTATAA	1 cut(s)	1565
Psp124BI	GAGCTC	4 cut(s)	234, 555, 1244, 2353
Psp1406I	AACGTT	1 cut(s)	428
Psp5II	RGGWCCY	1 cut(s)	1096
Psp6I	CCWGG	1 cut(s)	1301
PspFI	CCCAGC	1 cut(s)	668
PspGI	CCWGG	1 cut(s)	1301
PspLI	CGTACG	1 cut(s)	91
PspN4I	GGNNCC	9 cut(s)	563, 604, 1097, 1098, 1350, 1572, 1669, 1743, 2478
PspOMI	GGGCCC	1 cut(s)	1570
PspPI	GGNCC	6 cut(s)	238, 314, 561, 1096, 1570, 1571
PspPPI	RGGWCCY	1 cut(s)	1096
PstI	CTGCAG	1 cut(s)	718
PsuI	RGATCY	3 cut(s)	1375, 2186, 2502
PsyI	GACNNNGTC	1 cut(s)	290
PvuII	CAGCTG	1 cut(s)	2201
RruI	TCGCGA	1 cut(s)	255
RsaI	GTAC	9 cut(s)	93, 403, 903, 1226, 1307, 1669, 1867, 2161, 2297
RsaNI	GTAC	9 cut(s)	92, 402, 902, 1225, 1306, 1668, 1866, 2160, 2296
RseI	CAYNNNNRTG	3 cut(s)	681, 1035, 2371
SacI	GAGCTC	4 cut(s)	234, 555, 1244, 2353
SacII	CCGCGG	1 cut(s)	1179
SalI	GTCGAC	1 cut(s)	1728
SapI	GCTCTTC	1 cut(s)	1773
SaqAI	TTAA	5 cut(s)	1553, 1589, 2082, 2253, 2394
Sau96I	GGNCC	6 cut(s)	238, 314, 561, 1096, 1570, 1571
SchI	GAGTC	3 cut(s)	158, 276, 1532
ScrFI	CCNGG	3 cut(s)	242, 312, 1303
SduI	GDGCHC	9 cut(s)	234, 247, 555, 618, 1042, 1244, 1574, 2353, 2479
SfaNI	GCATC	4 cut(s)	366, 568, 2299, 2584
SfcI	CTRYAG	1 cut(s)	714
Sfr303I	CCGCGG	1 cut(s)	1179
SgrBI	CCGCGG	1 cut(s)	1179
SinI	GGWCC	3 cut(s)	238, 561, 1096
SmiMI	CAYNNNNRTG	3 cut(s)	681, 1035, 2371
SmlI	CTYRAG	1 cut(s)	1439
SmoI	CTYRAG	1 cut(s)	1439
SspMI	CTAG	9 cut(s)	1154, 1373, 1605, 1640, 1811, 1886, 2303, 2355, 2591
SstI	GAGCTC	4 cut(s)	234, 555, 1244, 2353
StyD4I	CCNGG	3 cut(s)	240, 310, 1301
StyI	CCWWGG	4 cut(s)	150, 498, 1170, 1596
TaaI	ACNGT	2 cut(s)	1909, 2641
TaiI	ACGT	4 cut(s)	431, 803, 1804, 2327
TaqI	TCGA	9 cut(s)	466, 1015, 1117, 1129, 1146, 1354, 1729, 2191, 2244
TatI	WGTACW	2 cut(s)	901, 2295
TauI	GCSGC	3 cut(s)	197, 299, 1178
TfiI	GAWTC	5 cut(s)	442, 887, 2144, 2285, 2634
Tru1I	TTAA	5 cut(s)	1553, 1589, 2082, 2253, 2394
Tru9I	TTAA	5 cut(s)	1553, 1589, 2082, 2253, 2394
TscAI	CASTG	3 cut(s)	390, 1239, 1912
TseFI	GTSAC	2 cut(s)	28, 2364
TseI	GCWGC	7 cut(s)	494, 713, 955, 1499, 1601, 2465, 2597
Tsp45I	GTSAC	2 cut(s)	28, 2364
TspGWI	ACGGA	2 cut(s)	16, 372
TspRI	CASTG	3 cut(s)	390, 1239, 1912
Tth111I	GACNNNGTC	1 cut(s)	290
Van91I	CCANNNNNTGG	1 cut(s)	1664
VpaK11BI	GGWCC	3 cut(s)	238, 561, 1096
XagI	CCTNNNNNAGG	1 cut(s)	1356
XapI	RAATTY	2 cut(s)	486, 777
XbaI	TCTAGA	1 cut(s)	1885
XceI	RCATGY	1 cut(s)	2296
XmiI	GTMKAC	2 cut(s)	636, 1729
XspI	CTAG	9 cut(s)	1154, 1373, 1605, 1640, 1811, 1886, 2303, 2355, 2591
Zsp2I	ATGCAT	1 cut(s)	688

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.