Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003116.1

Orthogroup ID

OG0009319

Physical Location & Seq

Genomic Coordinates Forward (+)

86480 .. 93113

Gene Structure 6634 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003116.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2721 bp

atgtccactctcttcctctccctccctactttcccctccaaattccaccacccaaacgacgccgtttccgcttccgtaactctccgcgcctccgccgccgtctccgcccccgagaagcgcacccgacgcaagaagcggcagccgaagcgcggtgacgatgactcctccccgtcctcctcgcccttatcctcctcctccgccgccgagaagagcctccgcttcaccttcatggaggagctcatgtcccgggcccgcaaccgcgacgccgtcggcgtctccgacgtcatctacgacatggtcgccgccggcctcacccccggcccccgctccttccacggattggtcgtcgctcacgccatgaacggcgacgccgagtccgcgatgcaaacgttgagaagggagctcagttcggggcttcgtcctctccacgaaacgtttatcgccttgattaggttgtttggctcaaaaggtcgagctacgaggggactggaaatccttgcagccatggagaaattaaattacgacattcgccaagcttggatgcttctcgttgaggagcttgttcggacacactatttggaagatgccaacagggtgttcttgaagggtgccaaaggtgggctgagagctacggatgaggtgtatgatcttcttatagtggaggactgtaaagtcggggatcattctaatgcattggaaatttcttatgagatggaggcagctgggcggatggcaacaacttttcatttcaattgccttcttagtgtgcaggctacttgtggaattcctgaaatagcttttgctacgtttgagaacatgcagtatggagaagaatacatgaaacctgatacagagacatataattgggtgattcaagcatataccagagctgaatcttatgatagagtgcaagatgttgctgagttacttggcctgatggttgaagaccacaagcgtttgcagcctaatgtgaaaacctatgcgttgctgattgagtgctttaccaagtattgtgtggtgcgagaagcaatacggcattttcgtgctctcaaattttttgaaggagggacaaaagttttacataatgaaggaaactttggggaccccttatctttgtatcttcgagctttatgtcgagaaggaagagtggttgagttgctagaagctttagaagccatggcccaagacaaccagccaattccaccgcgagccatgatattgagcagaaagtatcgaaccctggtgagctcatggattgaacctttgcaagaggaagctgaacttggatatgagattgattacatggccaggtacattgcagagggagggcttactggtgaacgcaagcgatgggtgcctcgaagagggaaaactccactagatcctgacgctgatggttttatatattctaaccctatggaaacctcattcaaacaacggtgtcttgaggattggaagacacacaacagaaagctcttgagaactttacagaatgaaggacttgcagctttaggggatgcatctgaatcagattatattagagtagagaataggttaaggaagatcataaagggtcctgaccagagtgttttaaagcccaaagctgctagtaagatggtagtatctgaactgaaggaagaactagaagctcaggatctgccaactgatggaactagaaatgtgctttaccagcgagtccaaaaagcaaggagaataaatcgctctcgtggtcgacccctctgggttcctcctgtggaggaggaggaagaagaggttgatgaagagctggatgaactaatctcaaggatcaagctggaagaagggaatacagagttctggaaacgccgtttccttggagaaggcttcagcagcgatcaggaaaagcaattagatagtggcaaatttgaacctctagatgtcacagatagtgtcaatgttgtagatgtggcgaaagaggttgacgatgatgaggctgaggaagctgacgatgaggatgaggatgacaataatgataatgatgacgatgacgacgatgaagaggaggaggaggaagtagaggtgggggtagaagtagaacaagctgagagacaagatgtagaaagggtgaagcaaaaggaaaatgaagctaagaagcctcttcaaatgattggagtacaattgttaaaagattctgaccagacgagtacatcatctaaaaagtcaaggagaagagcttctcgaagaatatcagctgaggatgatgctgatgatgactggtttcctgaggatatctttgaggcatttaaggagctgaggaaaaggagtatctttgatgaatctgacatgtatacaatcgctgatgcttggggttggacatgggagagagaatacaagaatagacctccaagaagatggtcacaagaatgggaagttgagttggcaattaaagttatgctcaaggttatggaattggggggaacacccacaattggggattgtgccatgattttgcgtgcagccataaaggctcctctcccttcagctttcttgaagatcttacagactacacatagtcttggctatgtatttggcagtccactctatgatgaaattatctcgctatgccttgatcttggagagctggatgcagccgttgccattgttgcagacttggagaccactgggatcaaagtcccagacgagaccttggacagggtaatttctgctaaacagacatcgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAP

Protein Analysis

906

Amino Acids

102.89

Weight (kDa)

4.88

Isoelectric Point (pI)

51.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04260
fragaria_vesca	FvH4_6g01350 FvH4_6g01350 FvH4_6g01350 FvH4_6g01352
malus_domestica	MD04G1234900.v1.1
prunus_persica	Prupe.6G354700_v2.0.a1 Prupe.6G354700_v2.0.a1
pyrus_communis	pycom04g20830 pycom04g20860
rosa_chinensis	RchiOBHm_Chr3g0448921
rosa_laevigata	RLG00000025866
rosa_multiflora	Rmu_sc0003116.1_g000017
rosa_roxburghii	Rroxscaffold_6G00427100
rosa_rugosa	Rorug02G0617100
rosa_samantha	Rh3AG015500 Rh3BG015500 Rh3BG015600 Rh3CG014400 Rh3CG014600 Rh3DG015900
rosa_wichuraiana	Rw3G001150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	671
AatII	GACGTC	1 cut(s)	285
AccB1I	GGYRCC	2 cut(s)	608, 1354
AccB7I	CCANNNNNTGG	2 cut(s)	340, 1667
AccBSI	CCGCTC	1 cut(s)	327
AccI	GTMKAC	2 cut(s)	1732, 2327
AccII	CGCG	5 cut(s)	87, 150, 261, 380, 1207
AclI	AACGTT	2 cut(s)	389, 434
AclWI	GGATC	5 cut(s)	687, 1376, 1662, 1814, 2672
AcoI	YGGCCR	1 cut(s)	1305
AcsI	RAATTY	5 cut(s)	41, 699, 783, 1052, 1901
AcuI	CTGAAG	3 cut(s)	1652, 1849, 2502
AcyI	GRCGYC	5 cut(s)	60, 264, 273, 282, 369
AfaI	GTAC	3 cut(s)	1313, 2154, 2185
AfiI	CCNNNNNNNGG	9 cut(s)	149, 340, 450, 618, 1364, 1667, 2468, 2469, 2691
AflIII	ACRYGT	1 cut(s)	2322
AhdI	GACNNNNNGTC	1 cut(s)	373
AjnI	CCWGG	2 cut(s)	1239, 1307
AjuI	GAANNNNNNNTTGG	6 cut(s)	581, 613, 1080, 1112, 1266, 1298
Alw21I	GWGCWC	4 cut(s)	240, 405, 1048, 1250
Alw26I	GTCTC	6 cut(s)	106, 280, 848, 2080, 2648, 2675
AlwI	GGATC	5 cut(s)	687, 1376, 1662, 1814, 2672
AlwNI	CAGNNNCTG	1 cut(s)	1657
Ama87I	CYCGRG	2 cut(s)	110, 246
AoxI	GGCC	6 cut(s)	249, 307, 319, 931, 1179, 1305
ApaI	GGGCCC	1 cut(s)	253
ApeKI	GCWGC	9 cut(s)	139, 500, 719, 961, 1505, 1604, 1869, 2495, 2627
ApoI	RAATTY	5 cut(s)	41, 699, 783, 1052, 1901
ArsI	GACNNNNNNTTYG	2 cut(s)	559, 591
Asp700I	GAANNNNTTC	1 cut(s)	2212
AspLEI	GCGC	3 cut(s)	89, 120, 150
AspS9I	GGNCC	6 cut(s)	249, 250, 320, 1102, 1180, 1574
AsuC2I	CCSGG	3 cut(s)	247, 248, 318
AsuHPI	GGTGA	7 cut(s)	164, 214, 304, 880, 1255, 1349, 2116
AvaI	CYCGRG	2 cut(s)	110, 246
AvaII	GGWCC	2 cut(s)	1102, 1574
AxyI	CCTNAGG	1 cut(s)	2262
BaeGI	GKGCMC	1 cut(s)	253
BalI	TGGCCA	1 cut(s)	1307
BanI	GGYRCC	2 cut(s)	608, 1354
BanII	GRGCYC	4 cut(s)	240, 253, 405, 1250
BauI	CACGAG	1 cut(s)	1725
BbsI	GAAGAC	2 cut(s)	951, 1463
Bbv12I	GWGCWC	4 cut(s)	240, 405, 1048, 1250
BbvCI	CCTCAGC	3 cut(s)	1974, 2232, 2291
BbvI	GCAGC	9 cut(s)	151, 512, 731, 973, 1517, 1591, 1881, 2507, 2639
BccI	CCATC	8 cut(s)	706, 724, 931, 1344, 1388, 1609, 1661, 2385
BceAI	ACGGC	7 cut(s)	47, 83, 251, 379, 1049, 1830, 2615
BciT130I	CCWGG	2 cut(s)	1241, 1309
BcnI	CCSGG	3 cut(s)	247, 248, 318
BcoDI	GTCTC	6 cut(s)	106, 280, 848, 2080, 2648, 2675
BfaI	CTAG	6 cut(s)	1160, 1379, 1608, 1643, 1674, 1913
BglI	GCCNNNNNGGC	1 cut(s)	2504
BglII	AGATCT	1 cut(s)	2532
Bme1390I	CCNGG	5 cut(s)	247, 248, 318, 1241, 1309
Bme18I	GGWCC	2 cut(s)	1102, 1574
BmeRI	GACNNNNNGTC	1 cut(s)	373
BmeT110I	CYCGRG	2 cut(s)	110, 246
BmgT120I	GGNCC	6 cut(s)	249, 250, 320, 1102, 1180, 1574
BmiI	GGNNCC	9 cut(s)	251, 322, 610, 1103, 1104, 1356, 1575, 1746, 2508
BmrFI	CCNGG	5 cut(s)	247, 248, 318, 1241, 1309
BmrI	ACTGGG	1 cut(s)	2670
BmsI	GCATC	8 cut(s)	372, 531, 574, 1507, 1529, 2230, 2329, 2614
BmuI	ACTGGG	1 cut(s)	2670
BpiI	GAAGAC	2 cut(s)	951, 1463
Bpu10I	CCTNAGC	4 cut(s)	1650, 1974, 2232, 2291
BpuEI	CTTGAG	4 cut(s)	1466, 1498, 1786, 2420
BpuMI	CCSGG	3 cut(s)	247, 248, 318
BsaHI	GRCGYC	5 cut(s)	60, 264, 273, 282, 369
BsaI	GGTCTC	2 cut(s)	2648, 2675
BsaJI	CCNNGG	8 cut(s)	246, 316, 334, 504, 1176, 1239, 1852, 2685
BsaXI	ACNNNNNCTCC	4 cut(s)	146, 176, 227, 257
Bsc4I	CCNNNNNNNGG	9 cut(s)	149, 340, 450, 618, 1364, 1667, 2468, 2469, 2691
Bse118I	RCCGGY	1 cut(s)	305
Bse1I	ACTGG	4 cut(s)	492, 1339, 2258, 2665
Bse21I	CCTNAGG	1 cut(s)	2262
Bse3DI	GCAATG	1 cut(s)	1314
BseBI	CCWGG	2 cut(s)	1241, 1309
BseDI	CCNNGG	8 cut(s)	246, 316, 334, 504, 1176, 1239, 1852, 2685
BseGI	GGATG	9 cut(s)	546, 640, 735, 1522, 1795, 1999, 2005, 2242, 2629
BseLI	CCNNNNNNNGG	9 cut(s)	149, 340, 450, 618, 1364, 1667, 2468, 2469, 2691
BseMI	GCAATG	1 cut(s)	1314
BseMII	CTCAG	9 cut(s)	418, 614, 912, 1664, 1965, 2073, 2223, 2253, 2282
BseNI	ACTGG	4 cut(s)	492, 1339, 2258, 2665
BseSI	GKGCMC	1 cut(s)	253
BseXI	GCAGC	9 cut(s)	151, 512, 731, 973, 1517, 1591, 1881, 2507, 2639
BseYI	CCCAGC	1 cut(s)	722
BsgI	GTGCAG	2 cut(s)	788, 2514
Bsh1236I	CGCG	5 cut(s)	87, 150, 261, 380, 1207
BshFI	GGCC	6 cut(s)	251, 309, 321, 933, 1181, 1307
BshNI	GGYRCC	2 cut(s)	608, 1354
BsiHKAI	GWGCWC	4 cut(s)	240, 405, 1048, 1250
BsiHKCI	CYCGRG	2 cut(s)	110, 246
BsiSI	CCGG	3 cut(s)	247, 306, 318
BslFI	GGGAC	5 cut(s)	229, 498, 1081, 1115, 2657
BslI	CCNNNNNNNGG	9 cut(s)	149, 340, 450, 618, 1364, 1667, 2468, 2469, 2691
BsmAI	GTCTC	6 cut(s)	106, 280, 848, 2080, 2648, 2675
BsmBI	CGTCTC	2 cut(s)	106, 280
BsmFI	GGGAC	5 cut(s)	229, 498, 1081, 1115, 2657
BsnI	GGCC	6 cut(s)	251, 309, 321, 933, 1181, 1307
Bso31I	GGTCTC	2 cut(s)	2648, 2675
BsoBI	CYCGRG	2 cut(s)	110, 246
Bsp120I	GGGCCC	1 cut(s)	249
Bsp1286I	GDGCHC	5 cut(s)	240, 253, 405, 1048, 1250
Bsp19I	CCATGG	2 cut(s)	504, 1176
BspANI	GGCC	6 cut(s)	251, 309, 321, 933, 1181, 1307
BspCNI	CTCAG	9 cut(s)	417, 615, 913, 1663, 1966, 2074, 2224, 2254, 2283
BspFNI	CGCG	5 cut(s)	87, 150, 261, 380, 1207
BspLI	GGNNCC	9 cut(s)	251, 322, 610, 1103, 1104, 1356, 1575, 1746, 2508
BspPI	GGATC	5 cut(s)	687, 1376, 1662, 1814, 2672
BspQI	GCTCTTC	3 cut(s)	203, 1776, 2203
BspT107I	GGYRCC	2 cut(s)	608, 1354
BspTNI	GGTCTC	2 cut(s)	2648, 2675
BsrBI	CCGCTC	1 cut(s)	327
BsrDI	GCAATG	1 cut(s)	1314
BsrFI	RCCGGY	1 cut(s)	305
BsrI	ACTGG	4 cut(s)	492, 1339, 2258, 2665
BssAI	RCCGGY	1 cut(s)	305
BssECI	CCNNGG	8 cut(s)	246, 316, 334, 504, 1176, 1239, 1852, 2685
BssNAI	GTATAC	1 cut(s)	2328
BssNI	GRCGYC	5 cut(s)	60, 264, 273, 282, 369
BssSI	CACGAG	1 cut(s)	1725
BssT1I	CCWWGG	4 cut(s)	504, 1176, 1852, 2685
Bst1107I	GTATAC	1 cut(s)	2328
Bst2BI	CACGAG	1 cut(s)	1725
Bst2UI	CCWGG	2 cut(s)	1241, 1309
Bst4CI	ACNGT	2 cut(s)	668, 1440
Bst6I	CTCTTC	9 cut(s)	17, 203, 1138, 1357, 1764, 1776, 2031, 2142, 2203
BstACI	GRCGYC	5 cut(s)	60, 264, 273, 282, 369
BstAPI	GCANNNNNTGC	1 cut(s)	2633
BstC8I	GCNNGC	6 cut(s)	253, 307, 771, 1209, 1346, 2493
BstDSI	CCRYGG	3 cut(s)	334, 504, 1176
BstENI	CCTNNNNNAGG	3 cut(s)	448, 1362, 2689
BstF5I	GGATG	9 cut(s)	546, 640, 735, 1522, 1795, 1999, 2005, 2242, 2629
BstFNI	CGCG	5 cut(s)	87, 150, 261, 380, 1207
BstHHI	GCGC	3 cut(s)	89, 120, 150
BstMAI	GTCTC	6 cut(s)	106, 280, 848, 2080, 2648, 2675
BstNI	CCWGG	2 cut(s)	1241, 1309
BstNSI	RCATGY	2 cut(s)	820, 2326
BstSCI	CCNGG	5 cut(s)	245, 246, 316, 1239, 1307
BstSLI	GKGCMC	1 cut(s)	253
BstUI	CGCG	5 cut(s)	87, 150, 261, 380, 1207
BstV1I	GCAGC	9 cut(s)	151, 512, 731, 973, 1517, 1591, 1881, 2507, 2639
BstV2I	GAAGAC	2 cut(s)	951, 1463
BstX2I	RGATCY	3 cut(s)	1381, 1654, 2532
BstXI	CCANNNNNNTGG	1 cut(s)	2391
BstYI	RGATCY	3 cut(s)	1381, 1654, 2532
BstZ17I	GTATAC	1 cut(s)	2328
Bsu36I	CCTNAGG	1 cut(s)	2262
BsuRI	GGCC	6 cut(s)	251, 309, 321, 933, 1181, 1307
BtgI	CCRYGG	3 cut(s)	334, 504, 1176
BtgZI	GCGATG	2 cut(s)	395, 1363
BtsCI	GGATG	9 cut(s)	546, 640, 735, 1522, 1795, 1999, 2005, 2242, 2629
BtsIMutI	CAGTG	1 cut(s)	2658
Cac8I	GCNNGC	6 cut(s)	253, 307, 771, 1209, 1346, 2493
CaiI	CAGNNNCTG	1 cut(s)	1657
CfoI	GCGC	3 cut(s)	89, 120, 150
Cfr10I	RCCGGY	1 cut(s)	305
Cfr13I	GGNCC	6 cut(s)	249, 250, 320, 1102, 1180, 1574
Cfr9I	CCCGGG	1 cut(s)	246
CseI	GACGC	6 cut(s)	68, 135, 262, 272, 377, 1397
Csp6I	GTAC	3 cut(s)	1312, 2153, 2184
CviQI	GTAC	3 cut(s)	1312, 2153, 2184
DraI	TTTAAA	1 cut(s)	1593
DrdI	GACNNNNNNGTC	1 cut(s)	671
DriI	GACNNNNNGTC	1 cut(s)	373
DseDI	GACNNNNNNGTC	1 cut(s)	671
EaeI	YGGCCR	1 cut(s)	1305
Eam1104I	CTCTTC	9 cut(s)	17, 203, 1138, 1357, 1764, 1776, 2031, 2142, 2203
Eam1105I	GACNNNNNGTC	1 cut(s)	373
EarI	CTCTTC	9 cut(s)	17, 203, 1138, 1357, 1764, 1776, 2031, 2142, 2203
EciI	GGCGGA	4 cut(s)	82, 94, 187, 742
Ecl136II	GAGCTC	3 cut(s)	238, 403, 1248
Eco130I	CCWWGG	4 cut(s)	504, 1176, 1852, 2685
Eco24I	GRGCYC	4 cut(s)	240, 253, 405, 1250
Eco31I	GGTCTC	2 cut(s)	2648, 2675
Eco32I	GATATC	1 cut(s)	2269
Eco47I	GGWCC	2 cut(s)	1102, 1574
Eco53kI	GAGCTC	3 cut(s)	238, 403, 1248
Eco57I	CTGAAG	3 cut(s)	1652, 1849, 2502
Eco81I	CCTNAGG	1 cut(s)	2262
Eco88I	CYCGRG	2 cut(s)	110, 246
EcoICRI	GAGCTC	3 cut(s)	238, 403, 1248
EcoNI	CCTNNNNNAGG	3 cut(s)	448, 1362, 2689
EcoO109I	RGGNCCY	2 cut(s)	1102, 1574
EcoRI	GAATTC	1 cut(s)	783
EcoRII	CCWGG	2 cut(s)	1239, 1307
EcoRV	GATATC	1 cut(s)	2269
EcoT14I	CCWWGG	4 cut(s)	504, 1176, 1852, 2685
EcoT22I	ATGCAT	2 cut(s)	694, 1522
EcoT38I	GRGCYC	4 cut(s)	240, 253, 405, 1250
ErhI	CCWWGG	4 cut(s)	504, 1176, 1852, 2685
Esp3I	CGTCTC	2 cut(s)	106, 280
FalI	AAGNNNNNCTT	2 cut(s)	1266, 1298
FaqI	GGGAC	5 cut(s)	229, 498, 1081, 1115, 2657
FauI	CCCGC	2 cut(s)	260, 332
FblI	GTMKAC	2 cut(s)	1732, 2327
FokI	GGATG	9 cut(s)	553, 647, 742, 1529, 1802, 2006, 2012, 2249, 2636
FriOI	GRGCYC	4 cut(s)	240, 253, 405, 1250
FspBI	CTAG	6 cut(s)	1160, 1379, 1608, 1643, 1674, 1913
GlaI	GCGC	3 cut(s)	88, 119, 149
GsaI	CCCAGC	1 cut(s)	726
HaeIII	GGCC	6 cut(s)	251, 309, 321, 933, 1181, 1307
HapII	CCGG	3 cut(s)	247, 306, 318
HgaI	GACGC	6 cut(s)	68, 135, 262, 272, 377, 1397
HhaI	GCGC	3 cut(s)	89, 120, 150
Hin1I	GRCGYC	5 cut(s)	60, 264, 273, 282, 369
Hin6I	GCGC	3 cut(s)	87, 118, 148
HinP1I	GCGC	3 cut(s)	87, 118, 148
HincII	GTYRAC	2 cut(s)	1733, 1960
HindII	GTYRAC	2 cut(s)	1733, 1960
HindIII	AAGCTT	2 cut(s)	534, 1164
HinfI	GANTC	8 cut(s)	161, 374, 871, 893, 1526, 1695, 2168, 2315
HpaII	CCGG	3 cut(s)	247, 306, 318
HphI	GGTGA	7 cut(s)	164, 214, 304, 880, 1255, 1349, 2116
Hpy166II	GTNNAC	6 cut(s)	6, 1340, 1733, 1960, 2328, 2576
Hpy188I	TCNGA	7 cut(s)	280, 567, 1525, 1531, 1627, 2173, 2320
Hpy8I	GTNNAC	6 cut(s)	6, 1340, 1733, 1960, 2328, 2576
Hpy99I	CGWCG	8 cut(s)	62, 129, 266, 272, 284, 350, 371, 2033
HpyCH4III	ACNGT	2 cut(s)	668, 1440
HpyCH4IV	ACGT	4 cut(s)	282, 389, 434, 806
HpySE526I	ACGT	4 cut(s)	282, 389, 434, 806
Hsp92I	GRCGYC	5 cut(s)	60, 264, 273, 282, 369
HspAI	GCGC	3 cut(s)	87, 118, 148
KflI	GGGWCCC	1 cut(s)	1102
KroI	GCCGGC	1 cut(s)	305
KroNI	GCCGGC	1 cut(s)	307
LguI	GCTCTTC	3 cut(s)	203, 1776, 2203
LmnI	GCTCC	6 cut(s)	235, 332, 400, 556, 2287, 2512
Lsp1109I	GCAGC	9 cut(s)	151, 512, 731, 973, 1517, 1591, 1881, 2507, 2639
LweI	GCATC	8 cut(s)	372, 531, 574, 1507, 1529, 2230, 2329, 2614
MaeI	CTAG	6 cut(s)	1160, 1379, 1608, 1643, 1674, 1913
MaeII	ACGT	4 cut(s)	282, 389, 434, 806
MaeIII	GTNAC	5 cut(s)	76, 152, 924, 1918, 2394
MbiI	CCGCTC	1 cut(s)	327
MfeI	CAATTG	3 cut(s)	751, 2156, 2466
MflI	RGATCY	3 cut(s)	1381, 1654, 2532
MhlI	GDGCHC	5 cut(s)	240, 253, 405, 1048, 1250
MlsI	TGGCCA	1 cut(s)	1307
MluNI	TGGCCA	1 cut(s)	1307
MlyI	GAGTC	3 cut(s)	155, 383, 1704
MmeI	TCCRAC	2 cut(s)	303, 2330
Mox20I	TGGCCA	1 cut(s)	1307
Mph1103I	ATGCAT	2 cut(s)	694, 1522
MroNI	GCCGGC	1 cut(s)	305
MroXI	GAANNNNTTC	1 cut(s)	2212
MscI	TGGCCA	1 cut(s)	1307
MseI	TTAA	6 cut(s)	515, 1556, 1592, 2162, 2283, 2424
MslI	CAYNNNNRTG	4 cut(s)	227, 687, 1041, 2401
Msp20I	TGGCCA	1 cut(s)	1307
MspA1I	CMGCKG	2 cut(s)	722, 2231
MspI	CCGG	3 cut(s)	247, 306, 318
MspR9I	CCNGG	5 cut(s)	247, 248, 318, 1241, 1309
MunI	CAATTG	3 cut(s)	751, 2156, 2466
MvaI	CCWGG	2 cut(s)	1241, 1309
MvnI	CGCG	5 cut(s)	87, 150, 261, 380, 1207
NaeI	GCCGGC	1 cut(s)	307
NciI	CCSGG	3 cut(s)	247, 248, 318
NcoI	CCATGG	2 cut(s)	504, 1176
NgoMIV	GCCGGC	1 cut(s)	305
NlaIV	GGNNCC	9 cut(s)	251, 322, 610, 1103, 1104, 1356, 1575, 1746, 2508
NmeAIII	GCCGAG	2 cut(s)	229, 397
NmuCI	GTSAC	3 cut(s)	152, 1918, 2394
NsiI	ATGCAT	2 cut(s)	694, 1522
NspI	RCATGY	2 cut(s)	820, 2326
PciI	ACATGT	1 cut(s)	2322
PciSI	GCTCTTC	3 cut(s)	203, 1776, 2203
PcsI	WCGNNNNNNNCGW	7 cut(s)	270, 276, 288, 342, 369, 1039, 2028
PdiI	GCCGGC	1 cut(s)	307
PdmI	GAANNNNTTC	1 cut(s)	2212
PfeI	GAWTC	5 cut(s)	871, 893, 1526, 2168, 2315
PflFI	GACNNNGTC	2 cut(s)	266, 296
PflMI	CCANNNNNTGG	2 cut(s)	340, 1667
PleI	GAGTC	3 cut(s)	155, 382, 1703
PpsI	GAGTC	3 cut(s)	155, 382, 1703
PpuMI	RGGWCCY	2 cut(s)	1102, 1574
PscI	ACATGT	1 cut(s)	2322
Psp124BI	GAGCTC	3 cut(s)	240, 405, 1250
Psp1406I	AACGTT	2 cut(s)	389, 434
Psp5II	RGGWCCY	2 cut(s)	1102, 1574
Psp6I	CCWGG	2 cut(s)	1239, 1307
PspFI	CCCAGC	1 cut(s)	722
PspGI	CCWGG	2 cut(s)	1239, 1307
PspN4I	GGNNCC	9 cut(s)	251, 322, 610, 1103, 1104, 1356, 1575, 1746, 2508
PspOMI	GGGCCC	1 cut(s)	249
PspPI	GGNCC	6 cut(s)	249, 250, 320, 1102, 1180, 1574
PspPPI	RGGWCCY	2 cut(s)	1102, 1574
PstNI	CAGNNNCTG	1 cut(s)	1657
PsuI	RGATCY	3 cut(s)	1381, 1654, 2532
PsyI	GACNNNGTC	2 cut(s)	266, 296
PvuII	CAGCTG	2 cut(s)	722, 2231
RsaI	GTAC	3 cut(s)	1313, 2154, 2185
RsaNI	GTAC	3 cut(s)	1312, 2153, 2184
RseI	CAYNNNNRTG	4 cut(s)	227, 687, 1041, 2401
SacI	GAGCTC	3 cut(s)	240, 405, 1250
SalI	GTCGAC	1 cut(s)	1731
SapI	GCTCTTC	3 cut(s)	203, 1776, 2203
SaqAI	TTAA	6 cut(s)	515, 1556, 1592, 2162, 2283, 2424
Sau96I	GGNCC	6 cut(s)	249, 250, 320, 1102, 1180, 1574
SchI	GAGTC	3 cut(s)	155, 383, 1704
ScrFI	CCNGG	5 cut(s)	247, 248, 318, 1241, 1309
SduI	GDGCHC	5 cut(s)	240, 253, 405, 1048, 1250
SfaNI	GCATC	8 cut(s)	372, 531, 574, 1507, 1529, 2230, 2329, 2614
SinI	GGWCC	2 cut(s)	1102, 1574
SmaI	CCCGGG	1 cut(s)	248
SmiMI	CAYNNNNRTG	4 cut(s)	227, 687, 1041, 2401
SmlI	CTYRAG	4 cut(s)	1445, 1477, 1801, 2435
SmoI	CTYRAG	4 cut(s)	1445, 1477, 1801, 2435
SspMI	CTAG	6 cut(s)	1160, 1379, 1608, 1643, 1674, 1913
SstI	GAGCTC	3 cut(s)	240, 405, 1250
StyD4I	CCNGG	5 cut(s)	245, 246, 316, 1239, 1307
StyI	CCWWGG	4 cut(s)	504, 1176, 1852, 2685
TaaI	ACNGT	2 cut(s)	668, 1440
TaiI	ACGT	4 cut(s)	285, 392, 437, 809
TaqI	TCGA	7 cut(s)	472, 1123, 1135, 1234, 1360, 1732, 2218
TatI	WGTACW	2 cut(s)	2152, 2183
TauI	GCSGC	4 cut(s)	98, 139, 203, 305
TfiI	GAWTC	5 cut(s)	871, 893, 1526, 2168, 2315
Tru1I	TTAA	6 cut(s)	515, 1556, 1592, 2162, 2283, 2424
Tru9I	TTAA	6 cut(s)	515, 1556, 1592, 2162, 2283, 2424
TscAI	CASTG	1 cut(s)	2665
TseFI	GTSAC	3 cut(s)	152, 1918, 2394
TseI	GCWGC	9 cut(s)	139, 500, 719, 961, 1505, 1604, 1869, 2495, 2627
Tsp45I	GTSAC	3 cut(s)	152, 1918, 2394
TspGWI	ACGGA	3 cut(s)	64, 351, 647
TspMI	CCCGGG	1 cut(s)	246
TspRI	CASTG	1 cut(s)	2665
Tth111I	GACNNNGTC	2 cut(s)	266, 296
Van91I	CCANNNNNTGG	2 cut(s)	340, 1667
VpaK11BI	GGWCC	2 cut(s)	1102, 1574
XagI	CCTNNNNNAGG	3 cut(s)	448, 1362, 2689
XapI	RAATTY	5 cut(s)	41, 699, 783, 1052, 1901
XbaI	TCTAGA	1 cut(s)	1912
XceI	RCATGY	2 cut(s)	820, 2326
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1012
XmaI	CCCGGG	1 cut(s)	246
XmiI	GTMKAC	2 cut(s)	1732, 2327
XmnI	GAANNNNTTC	1 cut(s)	2212
XspI	CTAG	6 cut(s)	1160, 1379, 1608, 1643, 1674, 1913
ZraI	GACGTC	1 cut(s)	283
Zsp2I	ATGCAT	2 cut(s)	694, 1522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.