Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0009319

Physical Location & Seq

Genomic Coordinates Reverse (-)

971353 .. 971655

Gene Structure 303 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG015500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGCAGGATGATGCTGATGATGACTGGTTTCCTGAGGATATCTTTGAGGCATTTAAGGAGCTGAGGAAAAGGAGGATCTTTGATGAATCTGACATGTATACAATCGCTGATGCTTGGGGTTGGACATGGGAGAGAGAATACAAGAATAGACCTCCAAGAAGATGGTCACAAGAATGGGAAGTTGAGTTGGCAATTAAAGTTATGCTCAAGGCAAGTTCTAATATTTGTACTCTTCCACCTGCAATGCTAGGTTTCCTTTCCTCATTAGCTGTTTCACATTACCTATGCTTCACAAAGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAP

Protein Analysis

100

Amino Acids

12.02

Weight (kDa)

4.82

Isoelectric Point (pI)

62.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04260
fragaria_vesca	FvH4_6g01350 FvH4_6g01350 FvH4_6g01350 FvH4_6g01352
malus_domestica	MD04G1234900.v1.1
prunus_persica	Prupe.6G354700_v2.0.a1 Prupe.6G354700_v2.0.a1
pyrus_communis	pycom04g20830 pycom04g20860
rosa_chinensis	RchiOBHm_Chr3g0448921
rosa_laevigata	RLG00000025866
rosa_multiflora	Rmu_sc0003116.1_g000017
rosa_roxburghii	Rroxscaffold_6G00427100
rosa_rugosa	Rorug02G0617100
rosa_samantha	Rh3AG015500 Rh3BG015500 Rh3BG015600 Rh3CG014400 Rh3CG014600 Rh3DG015900
rosa_wichuraiana	Rw3G001150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	247
Acc36I	ACCTGC	1 cut(s)	247
AccI	GTMKAC	1 cut(s)	98
AclWI	GGATC	1 cut(s)	83
AfaI	GTAC	1 cut(s)	229
AflIII	ACRYGT	1 cut(s)	93
AluBI	AGCT	2 cut(s)	61, 269
AluI	AGCT	2 cut(s)	61, 269
AlwI	GGATC	1 cut(s)	83
AxyI	CCTNAGG	1 cut(s)	33
BbvCI	CCTCAGC	1 cut(s)	62
BccI	CCATC	1 cut(s)	156
BfaI	CTAG	1 cut(s)	248
BfuAI	ACCTGC	1 cut(s)	247
BmsI	GCATC	1 cut(s)	100
Bpu10I	CCTNAGC	1 cut(s)	62
BpuEI	CTTGAG	1 cut(s)	191
Bse1I	ACTGG	1 cut(s)	29
Bse21I	CCTNAGG	1 cut(s)	33
Bse3DI	GCAATG	1 cut(s)	249
BseGI	GGATG	1 cut(s)	13
BseMI	GCAATG	1 cut(s)	249
BseMII	CTCAG	2 cut(s)	24, 53
BseNI	ACTGG	1 cut(s)	29
Bsp143I	GATC	1 cut(s)	75
BspCNI	CTCAG	2 cut(s)	25, 54
BspMI	ACCTGC	1 cut(s)	247
BspPI	GGATC	1 cut(s)	83
BsrDI	GCAATG	1 cut(s)	249
BsrI	ACTGG	1 cut(s)	29
BssMI	GATC	1 cut(s)	75
BssNAI	GTATAC	1 cut(s)	99
Bst1107I	GTATAC	1 cut(s)	99
Bst6I	CTCTTC	1 cut(s)	237
BstDEI	CTNAG	2 cut(s)	33, 62
BstF5I	GGATG	1 cut(s)	13
BstKTI	GATC	1 cut(s)	78
BstMBI	GATC	1 cut(s)	75
BstNSI	RCATGY	1 cut(s)	97
BstX2I	RGATCY	1 cut(s)	75
BstXI	CCANNNNNNTGG	1 cut(s)	162
BstYI	RGATCY	1 cut(s)	75
BstZ17I	GTATAC	1 cut(s)	99
Bsu36I	CCTNAGG	1 cut(s)	33
BtsCI	GGATG	1 cut(s)	13
BveI	ACCTGC	1 cut(s)	247
Csp6I	GTAC	1 cut(s)	228
CviAII	CATG	2 cut(s)	94, 126
CviJI	RGCY	2 cut(s)	61, 269
CviKI_1	RGCY	2 cut(s)	61, 269
CviQI	GTAC	1 cut(s)	228
DdeI	CTNAG	2 cut(s)	33, 62
DpnI	GATC	1 cut(s)	77
DpnII	GATC	1 cut(s)	75
Eam1104I	CTCTTC	1 cut(s)	237
EarI	CTCTTC	1 cut(s)	237
Eco32I	GATATC	1 cut(s)	40
Eco81I	CCTNAGG	1 cut(s)	33
EcoRV	GATATC	1 cut(s)	40
FaeI	CATG	2 cut(s)	97, 129
FaiI	YATR	5 cut(s)	95, 99, 127, 203, 286
FatI	CATG	2 cut(s)	93, 125
FblI	GTMKAC	1 cut(s)	98
FokI	GGATG	1 cut(s)	20
FspBI	CTAG	1 cut(s)	248
Hin1II	CATG	2 cut(s)	97, 129
HinfI	GANTC	1 cut(s)	86
Hpy166II	GTNNAC	1 cut(s)	99
Hpy188I	TCNGA	2 cut(s)	91, 302
Hpy188III	TCNNGA	1 cut(s)	32
Hpy8I	GTNNAC	1 cut(s)	99
HpyCH4V	TGCA	2 cut(s)	4, 242
HpyF3I	CTNAG	2 cut(s)	33, 62
Hsp92II	CATG	2 cut(s)	97, 129
Kzo9I	GATC	1 cut(s)	75
LmnI	GCTCC	1 cut(s)	58
LpnPI	CCDG	3 cut(s)	10, 45, 252
LweI	GCATC	1 cut(s)	100
MaeI	CTAG	1 cut(s)	248
MaeIII	GTNAC	1 cut(s)	165
MalI	GATC	1 cut(s)	77
MboI	GATC	1 cut(s)	75
MboII	GAAGA	2 cut(s)	171, 224
MflI	RGATCY	1 cut(s)	75
MluCI	AATT	1 cut(s)	192
MmeI	TCCRAC	1 cut(s)	101
MnlI	CCTC	6 cut(s)	28, 40, 57, 66, 162, 271
MseI	TTAA	2 cut(s)	54, 195
MslI	CAYNNNNRTG	1 cut(s)	172
NdeII	GATC	1 cut(s)	75
NlaIII	CATG	2 cut(s)	97, 129
NmuCI	GTSAC	1 cut(s)	165
NspI	RCATGY	1 cut(s)	97
PaqCI	CACCTGC	1 cut(s)	247
PciI	ACATGT	1 cut(s)	93
PfeI	GAWTC	1 cut(s)	86
PscI	ACATGT	1 cut(s)	93
PsuI	RGATCY	1 cut(s)	75
RsaI	GTAC	1 cut(s)	229
RsaNI	GTAC	1 cut(s)	228
RseI	CAYNNNNRTG	1 cut(s)	172
SaqAI	TTAA	2 cut(s)	54, 195
Sau3AI	GATC	1 cut(s)	75
SetI	ASST	6 cut(s)	63, 154, 241, 253, 271, 285
SfaNI	GCATC	1 cut(s)	100
SmiMI	CAYNNNNRTG	1 cut(s)	172
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
Sse9I	AATT	1 cut(s)	192
SspI	AATATT	1 cut(s)	223
SspMI	CTAG	1 cut(s)	248
TasI	AATT	1 cut(s)	192
TatI	WGTACW	1 cut(s)	227
TfiI	GAWTC	1 cut(s)	86
Tru1I	TTAA	2 cut(s)	54, 195
Tru9I	TTAA	2 cut(s)	54, 195
TseFI	GTSAC	1 cut(s)	165
Tsp45I	GTSAC	1 cut(s)	165
TspDTI	ATGAA	1 cut(s)	99
XceI	RCATGY	1 cut(s)	97
XmiI	GTMKAC	1 cut(s)	98
XspI	CTAG	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.