Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0009319

Physical Location & Seq

Genomic Coordinates Reverse (-)

760347 .. 760898

Gene Structure 552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g01352.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGTCCACTCTCTTCCTCTCCCTCCCAACCTTCCCTTCCAAATTCCACCACCAAAACGACGCCGTTTCCCTAAATGTCCATGCCTCCGCCCCCGAGAAGCGGACCCGCCGCAAGAAGCGCCACCCCAAGCGCGGCGACGATGACTCATCCACTTCCTCCTCCTCCGCTGTCAAGAAGAGCCTCCGCTTCACCTTCATGGAAAAGCTCATGTCCCGCGCCCGCAACCGCGACGCCGTCGGTGTGTCCGACCTCATCTATGACATGGTCGCCGCCGGGCCCCGGCCCTCACTTCTTTCACGGATTGGTCGTTGCTCACGCCTTAAAAGGCTATTCGCCTTGAAAGGTCGAGCTACAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAP

Protein Analysis

120

Amino Acids

13.4

Weight (kDa)

11.56

Isoelectric Point (pI)

60.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04260
fragaria_vesca	FvH4_6g01350 FvH4_6g01350 FvH4_6g01350 FvH4_6g01352
malus_domestica	MD04G1234900.v1.1
prunus_persica	Prupe.6G354700_v2.0.a1 Prupe.6G354700_v2.0.a1
pyrus_communis	pycom04g20830 pycom04g20860
rosa_chinensis	RchiOBHm_Chr3g0448921
rosa_laevigata	RLG00000025866
rosa_multiflora	Rmu_sc0003116.1_g000017
rosa_roxburghii	Rroxscaffold_6G00427100
rosa_rugosa	Rorug02G0617100
rosa_samantha	Rh3AG015500 Rh3BG015500 Rh3BG015600 Rh3CG014400 Rh3CG014600 Rh3DG015900
rosa_wichuraiana	Rw3G001150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	132, 216, 228
AcsI	RAATTY	1 cut(s)	41
AcyI	GRCGYC	2 cut(s)	60, 231
AfiI	CCNNNNNNNGG	3 cut(s)	99, 131, 279
AgsI	TTSAA	1 cut(s)	340
AjuI	GAANNNNNNNTTGG	2 cut(s)	19, 51
AluBI	AGCT	2 cut(s)	205, 350
AluI	AGCT	2 cut(s)	205, 350
Ama87I	CYCGRG	1 cut(s)	92
AoxI	GGCC	2 cut(s)	275, 281
ApaI	GGGCCC	1 cut(s)	279
ApoI	RAATTY	1 cut(s)	41
AspLEI	GCGC	3 cut(s)	120, 132, 218
AspS9I	GGNCC	4 cut(s)	102, 275, 276, 282
AsuC2I	CCSGG	2 cut(s)	274, 280
AsuHPI	GGTGA	1 cut(s)	181
AvaI	CYCGRG	1 cut(s)	92
AvaII	GGWCC	1 cut(s)	102
BaeGI	GKGCMC	1 cut(s)	279
BanII	GRGCYC	1 cut(s)	279
BceAI	ACGGC	2 cut(s)	47, 218
BcnI	CCSGG	2 cut(s)	274, 280
BfoI	RGCGCY	1 cut(s)	121
BisI	GCNGC	3 cut(s)	109, 133, 270
BlsI	GCNGC	3 cut(s)	110, 134, 271
Bme1390I	CCNGG	2 cut(s)	274, 280
Bme18I	GGWCC	1 cut(s)	102
BmeT110I	CYCGRG	1 cut(s)	92
BmgT120I	GGNCC	4 cut(s)	102, 275, 276, 282
BmiI	GGNNCC	3 cut(s)	104, 277, 278
BmrFI	CCNGG	2 cut(s)	274, 280
BpuMI	CCSGG	2 cut(s)	274, 280
BsaHI	GRCGYC	2 cut(s)	60, 231
BsaJI	CCNNGG	1 cut(s)	278
Bsc4I	CCNNNNNNNGG	3 cut(s)	99, 131, 279
BseDI	CCNNGG	1 cut(s)	278
BseGI	GGATG	1 cut(s)	146
BseLI	CCNNNNNNNGG	3 cut(s)	99, 131, 279
BseRI	GAGGAG	2 cut(s)	148, 151
BseSI	GKGCMC	1 cut(s)	279
Bsh1236I	CGCG	3 cut(s)	132, 216, 228
BshFI	GGCC	2 cut(s)	277, 283
BsiHKCI	CYCGRG	1 cut(s)	92
BsiSI	CCGG	2 cut(s)	273, 280
BslFI	GGGAC	1 cut(s)	196
BslI	CCNNNNNNNGG	3 cut(s)	99, 131, 279
BsmFI	GGGAC	1 cut(s)	196
BsnI	GGCC	2 cut(s)	277, 283
BsoBI	CYCGRG	1 cut(s)	92
Bsp120I	GGGCCC	1 cut(s)	275
Bsp1286I	GDGCHC	1 cut(s)	279
BspANI	GGCC	2 cut(s)	277, 283
BspFNI	CGCG	3 cut(s)	132, 216, 228
BspLI	GGNNCC	3 cut(s)	104, 277, 278
BspQI	GCTCTTC	1 cut(s)	170
BssECI	CCNNGG	1 cut(s)	278
BssNI	GRCGYC	2 cut(s)	60, 231
Bst6I	CTCTTC	2 cut(s)	17, 170
BstACI	GRCGYC	2 cut(s)	60, 231
BstC8I	GCNNGC	1 cut(s)	220
BstF5I	GGATG	1 cut(s)	146
BstFNI	CGCG	3 cut(s)	132, 216, 228
BstH2I	RGCGCY	1 cut(s)	121
BstHHI	GCGC	3 cut(s)	120, 132, 218
BstMWI	GCNNNNNNNGC	1 cut(s)	117
BstSCI	CCNGG	2 cut(s)	272, 278
BstSLI	GKGCMC	1 cut(s)	279
BstUI	CGCG	3 cut(s)	132, 216, 228
BsuRI	GGCC	2 cut(s)	277, 283
BtsCI	GGATG	1 cut(s)	146
Cac8I	GCNNGC	1 cut(s)	220
CfoI	GCGC	3 cut(s)	120, 132, 218
Cfr13I	GGNCC	4 cut(s)	102, 275, 276, 282
CseI	GACGC	2 cut(s)	68, 239
CviAII	CATG	4 cut(s)	80, 196, 208, 262
CviJI	RGCY	6 cut(s)	180, 205, 277, 283, 328, 350
CviKI_1	RGCY	6 cut(s)	180, 205, 277, 283, 328, 350
Eam1104I	CTCTTC	2 cut(s)	17, 170
EarI	CTCTTC	2 cut(s)	17, 170
EciI	GGCGGA	1 cut(s)	76
Eco24I	GRGCYC	1 cut(s)	279
Eco47I	GGWCC	1 cut(s)	102
Eco88I	CYCGRG	1 cut(s)	92
EcoO109I	RGGNCCY	1 cut(s)	276
EcoT38I	GRGCYC	1 cut(s)	279
FaeI	CATG	4 cut(s)	83, 199, 211, 265
FaiI	YATR	5 cut(s)	81, 197, 209, 258, 263
FaqI	GGGAC	1 cut(s)	196
FatI	CATG	4 cut(s)	79, 195, 207, 261
FauI	CCCGC	3 cut(s)	113, 221, 227
Fnu4HI	GCNGC	3 cut(s)	109, 133, 270
FokI	GGATG	1 cut(s)	133
FriOI	GRGCYC	1 cut(s)	279
Fsp4HI	GCNGC	3 cut(s)	109, 133, 270
GlaI	GCGC	3 cut(s)	119, 131, 217
GluI	GCNGC	3 cut(s)	109, 133, 270
HaeII	RGCGCY	1 cut(s)	121
HaeIII	GGCC	2 cut(s)	277, 283
HapII	CCGG	2 cut(s)	273, 280
HgaI	GACGC	2 cut(s)	68, 239
HhaI	GCGC	3 cut(s)	120, 132, 218
Hin1I	GRCGYC	2 cut(s)	60, 231
Hin1II	CATG	4 cut(s)	83, 199, 211, 265
Hin6I	GCGC	3 cut(s)	118, 130, 216
HinP1I	GCGC	3 cut(s)	118, 130, 216
HinfI	GANTC	1 cut(s)	143
HpaII	CCGG	2 cut(s)	273, 280
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	1 cut(s)	247
Hpy188III	TCNNGA	1 cut(s)	172
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	4 cut(s)	62, 140, 233, 239
HpyAV	CCTTC	3 cut(s)	40, 45, 202
HpyF10VI	GCNNNNNNNGC	1 cut(s)	117
Hsp92I	GRCGYC	2 cut(s)	60, 231
Hsp92II	CATG	4 cut(s)	83, 199, 211, 265
HspAI	GCGC	3 cut(s)	118, 130, 216
LguI	GCTCTTC	1 cut(s)	170
LpnPI	CCDG	2 cut(s)	286, 293
MboII	GAAGA	2 cut(s)	4, 187
MhlI	GDGCHC	1 cut(s)	279
MluCI	AATT	1 cut(s)	41
MlyI	GAGTC	1 cut(s)	137
MmeI	TCCRAC	1 cut(s)	270
MnlI	CCTC	9 cut(s)	26, 32, 94, 166, 169, 172, 191, 260, 295
MseI	TTAA	1 cut(s)	321
MslI	CAYNNNNRTG	1 cut(s)	194
MspA1I	CMGCKG	1 cut(s)	167
MspI	CCGG	2 cut(s)	273, 280
MspR9I	CCNGG	2 cut(s)	274, 280
MvnI	CGCG	3 cut(s)	132, 216, 228
MwoI	GCNNNNNNNGC	1 cut(s)	117
NciI	CCSGG	2 cut(s)	274, 280
NlaIII	CATG	4 cut(s)	83, 199, 211, 265
NlaIV	GGNNCC	3 cut(s)	104, 277, 278
PciSI	GCTCTTC	1 cut(s)	170
PcsI	WCGNNNNNNNCGW	2 cut(s)	243, 304
PflFI	GACNNNGTC	2 cut(s)	233, 263
PkrI	GCNGC	3 cut(s)	110, 134, 271
PleI	GAGTC	1 cut(s)	137
PpsI	GAGTC	1 cut(s)	137
PspN4I	GGNNCC	3 cut(s)	104, 277, 278
PspOMI	GGGCCC	1 cut(s)	275
PspPI	GGNCC	4 cut(s)	102, 275, 276, 282
PsyI	GACNNNGTC	2 cut(s)	233, 263
RseI	CAYNNNNRTG	1 cut(s)	194
SapI	GCTCTTC	1 cut(s)	170
SaqAI	TTAA	1 cut(s)	321
SatI	GCNGC	3 cut(s)	109, 133, 270
Sau96I	GGNCC	4 cut(s)	102, 275, 276, 282
SchI	GAGTC	1 cut(s)	137
ScrFI	CCNGG	2 cut(s)	274, 280
SduI	GDGCHC	1 cut(s)	279
SetI	ASST	6 cut(s)	32, 194, 207, 252, 346, 352
SinI	GGWCC	1 cut(s)	102
SmiMI	CAYNNNNRTG	1 cut(s)	194
Sse9I	AATT	1 cut(s)	41
StyD4I	CCNGG	2 cut(s)	272, 278
TaqI	TCGA	1 cut(s)	346
TasI	AATT	1 cut(s)	41
TauI	GCSGC	3 cut(s)	111, 135, 272
Tru1I	TTAA	1 cut(s)	321
Tru9I	TTAA	1 cut(s)	321
TspDTI	ATGAA	1 cut(s)	184
TspGWI	ACGGA	1 cut(s)	313
Tth111I	GACNNNGTC	2 cut(s)	233, 263
VpaK11BI	GGWCC	1 cut(s)	102
XapI	RAATTY	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.