Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0009319

Physical Location & Seq

Genomic Coordinates Reverse (-)

970256 .. 977380

Gene Structure 7125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG015900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2727 bp

ATGTCCACTCTCTTCCTCTCCCTCCCTACTTTCCCCTCCAAATTCCACCACCCAAACGACTCCGTTTCCGCTTCCGTAACCCTCCGCCCCTCCGCCGCCGTCTCCGCCCCCGAGAAGCGCACCCGACGCAAGAAGCGGCAGCCGAAGCGCGGCGACGATGACTCCTCCCTGTCCTCCTCGCCCTTATCCTCCTCCTCCGCCGCCGAGAAGAGCCTCCGTTTCACCTTCATGGAGGAGCTCATGTCCCGGGCCCGCAACCGCGACGCCGTCGGCGTCTCCGACGTAATCTACGACATGGTCGCCGCCGGCCTCACCCCTGGCCCTCGCTCCTTCCACGGATTGGTCGTCGCTCACGCCATGAACGGCGACGCCGAGTCCGCGATGCAAACGTTGAGAAGGGAGCTCAGTTCGGGGCTTCGTCCTCTCCACGAAACGTTTATCGCCTTGATTAGGTTGTTTGGCTCAAAAGGTCGAGCTACGAGGGGACTGGAAATCCTTGCAGCCATGGAGAAATTAAATTACGACATTCGCCAAGCTTGGATGCTTCTCGTTGAGGAGCTTGTTCGGACACGCTATTTGGAAGATGCCAACAGGGTGTTCTTGAAGGGTGCCAAAGGTGGGCTGAGAGCTACGGATGAGGTGTATGATCTTCTTATAGTGGAGGACTGTAAAGTCGGGGATCATTCTAATGCATTGGAAATTTCTTATGAGATGGAGGCAGCTGGGCGGATGGCAACAACTTTTCATTTCAATTGCCTTCTTAGTGTGCAGGCTACTTGTGGAATTCCTGAAATAGCTTTTGCTACGTTTGAGAACATGCAGTATGGAGAAGAATACATGAAACCTGATACAGAGACATATAATTGGGTGATTCAAGCATATACCAGAGCTGAATCTTATGATAGAGTGCAAGATGTTGCTGAGTTACTTGGCCTGATGGTTGAAGACCACAAGCGTTTGCAGCCTAATGTGAAAACCTATGCGTTGCTGATTGAGTGCTTTACCAAGTATTGTGTAGTGCGAGAGGCAATACGGCATTTTCGTGCTCTCAAATTTTTTGAAGGAGGGACAAAAGTTTTACATAATGAAGGAAACTTTGGGGACCCCTTATCTTTGTATCTTCGAGCTTTATGTCGAGAAGGAAGAGTGATTGACTTGCTAGAAGCTTTAGAAGCCATGGCCCAAGACAACCAGCCAATTCCACCGCGAGCCATGATATTGAGCAGAAAGTATCGAACCCTGGTGAGCTCATGGATTGAACCTTTGCAAGAGGAAGCTGAACTTGGATATGAGATTGATTACATGGCCAGGTACATTGCAGAGGGAGGGCTTACTGGTGAACGCAAGCGATGGGTGCCTCGAAGAGGGAAAACTCCACTAGATCCTGACGCTGATGGTTTTATATATTCTAACCCTATGGAAACCTCATTCAAACAACGGTGTCTTGAGGATTGGAAGACACACCACAGAAAGCTCTTGAGAACTTTACAGAATGAAGGACTTGCAGCTTTAGGGGATGCATCTGAATCAGATTATATTAGAGTAGAGAATAGGTTAAGGAAGATCATAAAGGGTCCTGACCAGAGTGTTTTAAAGCCCAAAGCTGCTAGTAAGATGGTAGTATCTGAACTGAAGGAAGAACTAGAAGCTCAGGATCTGCCAACTGATGGAACTAGAAATGTGCTTTACCAGCGAGTCCAAAAAGCAAGGAGAATAAATCGCTCTCGTGGTCGACCCCTCTGGGTTCCTCCTGTGGAGGAGGAGGAAGAAGAGGTTGATGAAGAGCTGGATGAACTAATCTCAAGGATCAAGCTGGAAGAAGGGAATACAGAGTTCTGGAAATGCCGTTTCCTTGGAGAAGGCTTCAGCAGCGATCAGGAAAAGCAATTAGATAGTGGCAAACTTGAACCTCTAGATGTCACAGATAGTGTCAATGTTGTAGATGTGGCGAAAGAGGTTGAAGATGATGAGGCTGAGGAAGCTGACGATGACGATGAGGATGACAATAATGATAATGATGACGATGACGACGACGACGACGAAGAGGAGGAGGAGGAAGTAGAGGTGGAGGTAGAAGTAGAACAAGCTGAGAGACAAGATGTAGAAAGGGTGAAGCAAAAGGAAAATGAAGCTAAGAAGCCTCTTCAAATGATTGGAGTACAGTTGTTAAAAGATTCTGACCAGACGAGTACGTCATCTAAAAAGTCAAGGAGAAGAGCTTCTCGAAGAATATCAGCTGAGGATGATGCTGATGATGACTGGTTTCCTGAGGATATCTTTGAGGCATTTAAGGAGCTGAGGAAAAGGAGGATCTTTGATGAATCTGACATGTATACAATCGCTGATGCTTGGGGTTGGACATGGGAGAGAGAATACAAGAATAGACCTCCAAGAAGATGGTCACAAGAATGGGAAGTTGAGTTGGCAATTAAAGTTATGCTCAAGGTGATGGAATTGGGGGGAACACCCACAATTGGGGATTGTGCCATGATTTTGCGTCAAGCCATAAAGGCTCCTCTCCCTTCAGCTTTCTTGAAGATCTTACAGACTACACATAGTCTTGGCTATGTATTTGGCAGTCCACTCTATGATGAAATTATCTCGCTATGCCTTGATCTTGGAGAGCTGGATGCAGCCGTTGCCATTGTTGCAGACTTGGAGACCACTGGGATCACAGTCCCAGATGAGACCTTGGACAGGGTAATTTCTGCTAAACGGACATCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAP

Protein Analysis

908

Amino Acids

103.33

Weight (kDa)

4.85

Isoelectric Point (pI)

50.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAP	PF02037	537 - 570	3.3e-08	SAP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009319)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04260
fragaria_vesca	FvH4_6g01350 FvH4_6g01350 FvH4_6g01350 FvH4_6g01352
malus_domestica	MD04G1234900.v1.1
prunus_persica	Prupe.6G354700_v2.0.a1 Prupe.6G354700_v2.0.a1
pyrus_communis	pycom04g20830 pycom04g20860
rosa_chinensis	RchiOBHm_Chr3g0448921
rosa_laevigata	RLG00000025866
rosa_multiflora	Rmu_sc0003116.1_g000017
rosa_roxburghii	Rroxscaffold_6G00427100
rosa_rugosa	Rorug02G0617100
rosa_samantha	Rh3AG015500 Rh3BG015500 Rh3BG015600 Rh3CG014400 Rh3CG014600 Rh3DG015900
rosa_wichuraiana	Rw3G001150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	671, 2191
AccB1I	GGYRCC	2 cut(s)	608, 1354
AccB7I	CCANNNNNTGG	2 cut(s)	340, 1667
AccI	GTMKAC	2 cut(s)	1732, 2333
AccII	CGCG	4 cut(s)	150, 261, 380, 1207
AclI	AACGTT	2 cut(s)	389, 434
AclWI	GGATC	6 cut(s)	687, 1376, 1662, 1814, 2318, 2678
AcoI	YGGCCR	1 cut(s)	1305
AcsI	RAATTY	4 cut(s)	41, 699, 783, 1052
AcuI	CTGAAG	3 cut(s)	1652, 1849, 2508
AcyI	GRCGYC	3 cut(s)	264, 273, 369
AfaI	GTAC	3 cut(s)	1313, 2160, 2191
AfiI	CCNNNNNNNGG	9 cut(s)	149, 340, 450, 618, 1364, 1667, 2474, 2475, 2697
AflIII	ACRYGT	1 cut(s)	2328
AhdI	GACNNNNNGTC	1 cut(s)	373
AjnI	CCWGG	3 cut(s)	316, 1239, 1307
AjuI	GAANNNNNNNTTGG	6 cut(s)	581, 613, 1080, 1112, 1266, 1298
Alw21I	GWGCWC	4 cut(s)	240, 405, 1048, 1250
Alw26I	GTCTC	6 cut(s)	106, 280, 848, 2086, 2654, 2681
AlwI	GGATC	6 cut(s)	687, 1376, 1662, 1814, 2318, 2678
AlwNI	CAGNNNCTG	1 cut(s)	1657
Ama87I	CYCGRG	2 cut(s)	110, 246
AoxI	GGCC	6 cut(s)	249, 307, 319, 931, 1179, 1305
ApaI	GGGCCC	1 cut(s)	253
ApeKI	GCWGC	8 cut(s)	139, 500, 719, 961, 1505, 1604, 1869, 2633
ApoI	RAATTY	4 cut(s)	41, 699, 783, 1052
ArsI	GACNNNNNNTTYG	2 cut(s)	559, 591
Asp700I	GAANNNNTTC	1 cut(s)	2218
AspLEI	GCGC	2 cut(s)	120, 150
AspS9I	GGNCC	6 cut(s)	249, 250, 320, 1102, 1180, 1574
AsuC2I	CCSGG	2 cut(s)	247, 248
AsuHPI	GGTGA	7 cut(s)	214, 304, 880, 1255, 1349, 2122, 2458
AvaI	CYCGRG	2 cut(s)	110, 246
AvaII	GGWCC	2 cut(s)	1102, 1574
AxyI	CCTNAGG	1 cut(s)	2268
BaeGI	GKGCMC	1 cut(s)	253
BalI	TGGCCA	1 cut(s)	1307
BanI	GGYRCC	2 cut(s)	608, 1354
BanII	GRGCYC	4 cut(s)	240, 253, 405, 1250
BauI	CACGAG	1 cut(s)	1725
BbsI	GAAGAC	2 cut(s)	951, 1463
Bbv12I	GWGCWC	4 cut(s)	240, 405, 1048, 1250
BbvCI	CCTCAGC	3 cut(s)	1974, 2238, 2297
BbvI	GCAGC	8 cut(s)	151, 512, 731, 973, 1517, 1591, 1881, 2645
BccI	CCATC	9 cut(s)	706, 724, 931, 1344, 1388, 1609, 1661, 2391, 2443
BceAI	ACGGC	6 cut(s)	83, 251, 379, 1049, 1830, 2621
BciT130I	CCWGG	3 cut(s)	318, 1241, 1309
BcnI	CCSGG	2 cut(s)	247, 248
BcoDI	GTCTC	6 cut(s)	106, 280, 848, 2086, 2654, 2681
BfaI	CTAG	6 cut(s)	1160, 1379, 1608, 1643, 1674, 1913
BglI	GCCNNNNNGGC	1 cut(s)	2510
BglII	AGATCT	1 cut(s)	2538
Bme1390I	CCNGG	5 cut(s)	247, 248, 318, 1241, 1309
Bme18I	GGWCC	2 cut(s)	1102, 1574
BmeRI	GACNNNNNGTC	1 cut(s)	373
BmeT110I	CYCGRG	2 cut(s)	110, 246
BmgT120I	GGNCC	6 cut(s)	249, 250, 320, 1102, 1180, 1574
BmiI	GGNNCC	8 cut(s)	251, 610, 1103, 1104, 1356, 1575, 1746, 2514
BmrFI	CCNGG	5 cut(s)	247, 248, 318, 1241, 1309
BmrI	ACTGGG	1 cut(s)	2676
BmsI	GCATC	8 cut(s)	372, 531, 574, 1507, 1529, 2236, 2335, 2620
BmuI	ACTGGG	1 cut(s)	2676
BpiI	GAAGAC	2 cut(s)	951, 1463
Bpu10I	CCTNAGC	4 cut(s)	1650, 1974, 2238, 2297
BpuEI	CTTGAG	4 cut(s)	1466, 1498, 1786, 2426
BpuMI	CCSGG	2 cut(s)	247, 248
BsaHI	GRCGYC	3 cut(s)	264, 273, 369
BsaI	GGTCTC	2 cut(s)	2654, 2681
BsaJI	CCNNGG	8 cut(s)	246, 316, 334, 504, 1176, 1239, 1852, 2691
BsaXI	ACNNNNNCTCC	4 cut(s)	146, 176, 227, 257
Bsc4I	CCNNNNNNNGG	9 cut(s)	149, 340, 450, 618, 1364, 1667, 2474, 2475, 2697
Bse118I	RCCGGY	1 cut(s)	305
Bse1I	ACTGG	4 cut(s)	492, 1339, 2264, 2671
Bse21I	CCTNAGG	1 cut(s)	2268
Bse3DI	GCAATG	1 cut(s)	1314
BseBI	CCWGG	3 cut(s)	318, 1241, 1309
BseDI	CCNNGG	8 cut(s)	246, 316, 334, 504, 1176, 1239, 1852, 2691
BseGI	GGATG	8 cut(s)	546, 640, 735, 1522, 1795, 2005, 2248, 2635
BseLI	CCNNNNNNNGG	9 cut(s)	149, 340, 450, 618, 1364, 1667, 2474, 2475, 2697
BseMI	GCAATG	1 cut(s)	1314
BseMII	CTCAG	9 cut(s)	418, 614, 912, 1664, 1965, 2079, 2229, 2259, 2288
BseNI	ACTGG	4 cut(s)	492, 1339, 2264, 2671
BseSI	GKGCMC	1 cut(s)	253
BseXI	GCAGC	8 cut(s)	151, 512, 731, 973, 1517, 1591, 1881, 2645
BseYI	CCCAGC	1 cut(s)	722
BsgI	GTGCAG	1 cut(s)	788
Bsh1236I	CGCG	4 cut(s)	150, 261, 380, 1207
BshFI	GGCC	6 cut(s)	251, 309, 321, 933, 1181, 1307
BshNI	GGYRCC	2 cut(s)	608, 1354
BsiHKAI	GWGCWC	4 cut(s)	240, 405, 1048, 1250
BsiHKCI	CYCGRG	2 cut(s)	110, 246
BsiSI	CCGG	2 cut(s)	247, 306
BslFI	GGGAC	5 cut(s)	229, 498, 1081, 1115, 2663
BslI	CCNNNNNNNGG	9 cut(s)	149, 340, 450, 618, 1364, 1667, 2474, 2475, 2697
BsmAI	GTCTC	6 cut(s)	106, 280, 848, 2086, 2654, 2681
BsmBI	CGTCTC	2 cut(s)	106, 280
BsmFI	GGGAC	5 cut(s)	229, 498, 1081, 1115, 2663
BsnI	GGCC	6 cut(s)	251, 309, 321, 933, 1181, 1307
Bso31I	GGTCTC	2 cut(s)	2654, 2681
BsoBI	CYCGRG	2 cut(s)	110, 246
Bsp120I	GGGCCC	1 cut(s)	249
Bsp1286I	GDGCHC	5 cut(s)	240, 253, 405, 1048, 1250
Bsp19I	CCATGG	2 cut(s)	504, 1176
BspANI	GGCC	6 cut(s)	251, 309, 321, 933, 1181, 1307
BspCNI	CTCAG	9 cut(s)	417, 615, 913, 1663, 1966, 2080, 2230, 2260, 2289
BspFNI	CGCG	4 cut(s)	150, 261, 380, 1207
BspLI	GGNNCC	8 cut(s)	251, 610, 1103, 1104, 1356, 1575, 1746, 2514
BspPI	GGATC	6 cut(s)	687, 1376, 1662, 1814, 2318, 2678
BspQI	GCTCTTC	3 cut(s)	203, 1776, 2209
BspT107I	GGYRCC	2 cut(s)	608, 1354
BspTNI	GGTCTC	2 cut(s)	2654, 2681
BsrDI	GCAATG	1 cut(s)	1314
BsrFI	RCCGGY	1 cut(s)	305
BsrI	ACTGG	4 cut(s)	492, 1339, 2264, 2671
BssAI	RCCGGY	1 cut(s)	305
BssECI	CCNNGG	8 cut(s)	246, 316, 334, 504, 1176, 1239, 1852, 2691
BssNAI	GTATAC	1 cut(s)	2334
BssNI	GRCGYC	3 cut(s)	264, 273, 369
BssSI	CACGAG	1 cut(s)	1725
BssT1I	CCWWGG	4 cut(s)	504, 1176, 1852, 2691
Bst1107I	GTATAC	1 cut(s)	2334
Bst2BI	CACGAG	1 cut(s)	1725
Bst2UI	CCWGG	3 cut(s)	318, 1241, 1309
Bst4CI	ACNGT	4 cut(s)	668, 1440, 2163, 2677
Bst6I	CTCTTC	9 cut(s)	17, 203, 1138, 1357, 1764, 1776, 2037, 2148, 2209
BstACI	GRCGYC	3 cut(s)	264, 273, 369
BstAPI	GCANNNNNTGC	1 cut(s)	2639
BstC8I	GCNNGC	5 cut(s)	253, 307, 771, 1209, 1346
BstDSI	CCRYGG	3 cut(s)	334, 504, 1176
BstENI	CCTNNNNNAGG	3 cut(s)	448, 1362, 2695
BstF5I	GGATG	8 cut(s)	546, 640, 735, 1522, 1795, 2005, 2248, 2635
BstFNI	CGCG	4 cut(s)	150, 261, 380, 1207
BstHHI	GCGC	2 cut(s)	120, 150
BstMAI	GTCTC	6 cut(s)	106, 280, 848, 2086, 2654, 2681
BstNI	CCWGG	3 cut(s)	318, 1241, 1309
BstNSI	RCATGY	2 cut(s)	820, 2332
BstSCI	CCNGG	5 cut(s)	245, 246, 316, 1239, 1307
BstSLI	GKGCMC	1 cut(s)	253
BstUI	CGCG	4 cut(s)	150, 261, 380, 1207
BstV1I	GCAGC	8 cut(s)	151, 512, 731, 973, 1517, 1591, 1881, 2645
BstV2I	GAAGAC	2 cut(s)	951, 1463
BstX2I	RGATCY	4 cut(s)	1381, 1654, 2310, 2538
BstXI	CCANNNNNNTGG	1 cut(s)	2397
BstYI	RGATCY	4 cut(s)	1381, 1654, 2310, 2538
BstZ17I	GTATAC	1 cut(s)	2334
Bsu36I	CCTNAGG	1 cut(s)	2268
BsuRI	GGCC	6 cut(s)	251, 309, 321, 933, 1181, 1307
BtgI	CCRYGG	3 cut(s)	334, 504, 1176
BtgZI	GCGATG	2 cut(s)	395, 1363
BtsCI	GGATG	8 cut(s)	546, 640, 735, 1522, 1795, 2005, 2248, 2635
BtsIMutI	CAGTG	1 cut(s)	2664
Cac8I	GCNNGC	5 cut(s)	253, 307, 771, 1209, 1346
CaiI	CAGNNNCTG	1 cut(s)	1657
CfoI	GCGC	2 cut(s)	120, 150
Cfr10I	RCCGGY	1 cut(s)	305
Cfr13I	GGNCC	6 cut(s)	249, 250, 320, 1102, 1180, 1574
Cfr9I	CCCGGG	1 cut(s)	246
CseI	GACGC	6 cut(s)	135, 262, 272, 377, 1397, 2486
Csp6I	GTAC	3 cut(s)	1312, 2159, 2190
CviQI	GTAC	3 cut(s)	1312, 2159, 2190
DraI	TTTAAA	1 cut(s)	1593
DrdI	GACNNNNNNGTC	2 cut(s)	671, 2191
DriI	GACNNNNNGTC	1 cut(s)	373
DseDI	GACNNNNNNGTC	2 cut(s)	671, 2191
EaeI	YGGCCR	1 cut(s)	1305
Eam1104I	CTCTTC	9 cut(s)	17, 203, 1138, 1357, 1764, 1776, 2037, 2148, 2209
Eam1105I	GACNNNNNGTC	1 cut(s)	373
EarI	CTCTTC	9 cut(s)	17, 203, 1138, 1357, 1764, 1776, 2037, 2148, 2209
EciI	GGCGGA	5 cut(s)	74, 82, 94, 187, 742
Ecl136II	GAGCTC	3 cut(s)	238, 403, 1248
Eco130I	CCWWGG	4 cut(s)	504, 1176, 1852, 2691
Eco24I	GRGCYC	4 cut(s)	240, 253, 405, 1250
Eco31I	GGTCTC	2 cut(s)	2654, 2681
Eco32I	GATATC	1 cut(s)	2275
Eco47I	GGWCC	2 cut(s)	1102, 1574
Eco53kI	GAGCTC	3 cut(s)	238, 403, 1248
Eco57I	CTGAAG	3 cut(s)	1652, 1849, 2508
Eco81I	CCTNAGG	1 cut(s)	2268
Eco88I	CYCGRG	2 cut(s)	110, 246
EcoICRI	GAGCTC	3 cut(s)	238, 403, 1248
EcoNI	CCTNNNNNAGG	3 cut(s)	448, 1362, 2695
EcoO109I	RGGNCCY	2 cut(s)	1102, 1574
EcoRI	GAATTC	1 cut(s)	783
EcoRII	CCWGG	3 cut(s)	316, 1239, 1307
EcoRV	GATATC	1 cut(s)	2275
EcoT14I	CCWWGG	4 cut(s)	504, 1176, 1852, 2691
EcoT22I	ATGCAT	2 cut(s)	694, 1522
EcoT38I	GRGCYC	4 cut(s)	240, 253, 405, 1250
ErhI	CCWWGG	4 cut(s)	504, 1176, 1852, 2691
Esp3I	CGTCTC	2 cut(s)	106, 280
FalI	AAGNNNNNCTT	2 cut(s)	1266, 1298
FaqI	GGGAC	5 cut(s)	229, 498, 1081, 1115, 2663
FauI	CCCGC	1 cut(s)	260
FblI	GTMKAC	2 cut(s)	1732, 2333
FokI	GGATG	8 cut(s)	553, 647, 742, 1529, 1802, 2012, 2255, 2642
FriOI	GRGCYC	4 cut(s)	240, 253, 405, 1250
FspBI	CTAG	6 cut(s)	1160, 1379, 1608, 1643, 1674, 1913
GlaI	GCGC	2 cut(s)	119, 149
GsaI	CCCAGC	1 cut(s)	726
HaeIII	GGCC	6 cut(s)	251, 309, 321, 933, 1181, 1307
HapII	CCGG	2 cut(s)	247, 306
HgaI	GACGC	6 cut(s)	135, 262, 272, 377, 1397, 2486
HhaI	GCGC	2 cut(s)	120, 150
Hin1I	GRCGYC	3 cut(s)	264, 273, 369
Hin6I	GCGC	2 cut(s)	118, 148
HinP1I	GCGC	2 cut(s)	118, 148
HincII	GTYRAC	1 cut(s)	1733
HindII	GTYRAC	1 cut(s)	1733
HindIII	AAGCTT	2 cut(s)	534, 1164
HinfI	GANTC	9 cut(s)	59, 161, 374, 871, 893, 1526, 1695, 2174, 2321
HpaII	CCGG	2 cut(s)	247, 306
HphI	GGTGA	7 cut(s)	214, 304, 880, 1255, 1349, 2122, 2458
Hpy166II	GTNNAC	5 cut(s)	6, 1340, 1733, 2334, 2582
Hpy188I	TCNGA	7 cut(s)	280, 567, 1525, 1531, 1627, 2179, 2326
Hpy8I	GTNNAC	5 cut(s)	6, 1340, 1733, 2334, 2582
HpyCH4III	ACNGT	4 cut(s)	668, 1440, 2163, 2677
HpyCH4IV	ACGT	5 cut(s)	282, 389, 434, 806, 2192
HpySE526I	ACGT	5 cut(s)	282, 389, 434, 806, 2192
Hsp92I	GRCGYC	3 cut(s)	264, 273, 369
HspAI	GCGC	2 cut(s)	118, 148
KflI	GGGWCCC	1 cut(s)	1102
KroI	GCCGGC	1 cut(s)	305
KroNI	GCCGGC	1 cut(s)	307
LguI	GCTCTTC	3 cut(s)	203, 1776, 2209
LmnI	GCTCC	6 cut(s)	235, 332, 400, 556, 2293, 2518
Lsp1109I	GCAGC	8 cut(s)	151, 512, 731, 973, 1517, 1591, 1881, 2645
LweI	GCATC	8 cut(s)	372, 531, 574, 1507, 1529, 2236, 2335, 2620
MaeI	CTAG	6 cut(s)	1160, 1379, 1608, 1643, 1674, 1913
MaeII	ACGT	5 cut(s)	282, 389, 434, 806, 2192
MaeIII	GTNAC	4 cut(s)	76, 924, 1918, 2400
MfeI	CAATTG	2 cut(s)	751, 2472
MflI	RGATCY	4 cut(s)	1381, 1654, 2310, 2538
MhlI	GDGCHC	5 cut(s)	240, 253, 405, 1048, 1250
MlsI	TGGCCA	1 cut(s)	1307
MluNI	TGGCCA	1 cut(s)	1307
MlyI	GAGTC	4 cut(s)	53, 155, 383, 1704
MmeI	TCCRAC	2 cut(s)	303, 2336
Mox20I	TGGCCA	1 cut(s)	1307
Mph1103I	ATGCAT	2 cut(s)	694, 1522
MroNI	GCCGGC	1 cut(s)	305
MroXI	GAANNNNTTC	1 cut(s)	2218
MscI	TGGCCA	1 cut(s)	1307
MseI	TTAA	6 cut(s)	515, 1556, 1592, 2168, 2289, 2430
MslI	CAYNNNNRTG	4 cut(s)	227, 687, 1041, 2407
Msp20I	TGGCCA	1 cut(s)	1307
MspA1I	CMGCKG	2 cut(s)	722, 2237
MspI	CCGG	2 cut(s)	247, 306
MspR9I	CCNGG	5 cut(s)	247, 248, 318, 1241, 1309
MunI	CAATTG	2 cut(s)	751, 2472
MvaI	CCWGG	3 cut(s)	318, 1241, 1309
MvnI	CGCG	4 cut(s)	150, 261, 380, 1207
NaeI	GCCGGC	1 cut(s)	307
NciI	CCSGG	2 cut(s)	247, 248
NcoI	CCATGG	2 cut(s)	504, 1176
NgoMIV	GCCGGC	1 cut(s)	305
NlaIV	GGNNCC	8 cut(s)	251, 610, 1103, 1104, 1356, 1575, 1746, 2514
NmeAIII	GCCGAG	2 cut(s)	229, 397
NmuCI	GTSAC	2 cut(s)	1918, 2400
NsiI	ATGCAT	2 cut(s)	694, 1522
NspI	RCATGY	2 cut(s)	820, 2332
PciI	ACATGT	1 cut(s)	2328
PciSI	GCTCTTC	3 cut(s)	203, 1776, 2209
PcsI	WCGNNNNNNNCGW	9 cut(s)	270, 276, 288, 342, 369, 1039, 2028, 2034, 2037
PdiI	GCCGGC	1 cut(s)	307
PdmI	GAANNNNTTC	1 cut(s)	2218
PfeI	GAWTC	5 cut(s)	871, 893, 1526, 2174, 2321
PflFI	GACNNNGTC	2 cut(s)	266, 296
PflMI	CCANNNNNTGG	2 cut(s)	340, 1667
PleI	GAGTC	4 cut(s)	53, 155, 382, 1703
PpsI	GAGTC	4 cut(s)	53, 155, 382, 1703
PpuMI	RGGWCCY	2 cut(s)	1102, 1574
PscI	ACATGT	1 cut(s)	2328
Psp124BI	GAGCTC	3 cut(s)	240, 405, 1250
Psp1406I	AACGTT	2 cut(s)	389, 434
Psp5II	RGGWCCY	2 cut(s)	1102, 1574
Psp6I	CCWGG	3 cut(s)	316, 1239, 1307
PspFI	CCCAGC	1 cut(s)	722
PspGI	CCWGG	3 cut(s)	316, 1239, 1307
PspN4I	GGNNCC	8 cut(s)	251, 610, 1103, 1104, 1356, 1575, 1746, 2514
PspOMI	GGGCCC	1 cut(s)	249
PspPI	GGNCC	6 cut(s)	249, 250, 320, 1102, 1180, 1574
PspPPI	RGGWCCY	2 cut(s)	1102, 1574
PstNI	CAGNNNCTG	1 cut(s)	1657
PsuI	RGATCY	4 cut(s)	1381, 1654, 2310, 2538
PsyI	GACNNNGTC	2 cut(s)	266, 296
PvuII	CAGCTG	2 cut(s)	722, 2237
RsaI	GTAC	3 cut(s)	1313, 2160, 2191
RsaNI	GTAC	3 cut(s)	1312, 2159, 2190
RseI	CAYNNNNRTG	4 cut(s)	227, 687, 1041, 2407
SacI	GAGCTC	3 cut(s)	240, 405, 1250
SalI	GTCGAC	1 cut(s)	1731
SapI	GCTCTTC	3 cut(s)	203, 1776, 2209
SaqAI	TTAA	6 cut(s)	515, 1556, 1592, 2168, 2289, 2430
Sau96I	GGNCC	6 cut(s)	249, 250, 320, 1102, 1180, 1574
SchI	GAGTC	4 cut(s)	53, 155, 383, 1704
ScrFI	CCNGG	5 cut(s)	247, 248, 318, 1241, 1309
SduI	GDGCHC	5 cut(s)	240, 253, 405, 1048, 1250
SfaNI	GCATC	8 cut(s)	372, 531, 574, 1507, 1529, 2236, 2335, 2620
SinI	GGWCC	2 cut(s)	1102, 1574
SmaI	CCCGGG	1 cut(s)	248
SmiMI	CAYNNNNRTG	4 cut(s)	227, 687, 1041, 2407
SmlI	CTYRAG	4 cut(s)	1445, 1477, 1801, 2441
SmoI	CTYRAG	4 cut(s)	1445, 1477, 1801, 2441
SspMI	CTAG	6 cut(s)	1160, 1379, 1608, 1643, 1674, 1913
SstI	GAGCTC	3 cut(s)	240, 405, 1250
StyD4I	CCNGG	5 cut(s)	245, 246, 316, 1239, 1307
StyI	CCWWGG	4 cut(s)	504, 1176, 1852, 2691
TaaI	ACNGT	4 cut(s)	668, 1440, 2163, 2677
TaiI	ACGT	5 cut(s)	285, 392, 437, 809, 2195
TaqI	TCGA	7 cut(s)	472, 1123, 1135, 1234, 1360, 1732, 2224
TatI	WGTACW	1 cut(s)	2158
TauI	GCSGC	5 cut(s)	98, 139, 153, 203, 305
TfiI	GAWTC	5 cut(s)	871, 893, 1526, 2174, 2321
Tru1I	TTAA	6 cut(s)	515, 1556, 1592, 2168, 2289, 2430
Tru9I	TTAA	6 cut(s)	515, 1556, 1592, 2168, 2289, 2430
TscAI	CASTG	1 cut(s)	2671
TseFI	GTSAC	2 cut(s)	1918, 2400
TseI	GCWGC	8 cut(s)	139, 500, 719, 961, 1505, 1604, 1869, 2633
Tsp45I	GTSAC	2 cut(s)	1918, 2400
TspGWI	ACGGA	5 cut(s)	52, 64, 206, 351, 647
TspMI	CCCGGG	1 cut(s)	246
TspRI	CASTG	1 cut(s)	2671
Tth111I	GACNNNGTC	2 cut(s)	266, 296
Van91I	CCANNNNNTGG	2 cut(s)	340, 1667
VpaK11BI	GGWCC	2 cut(s)	1102, 1574
XagI	CCTNNNNNAGG	3 cut(s)	448, 1362, 2695
XapI	RAATTY	4 cut(s)	41, 699, 783, 1052
XbaI	TCTAGA	1 cut(s)	1912
XceI	RCATGY	2 cut(s)	820, 2332
XmaI	CCCGGG	1 cut(s)	246
XmiI	GTMKAC	2 cut(s)	1732, 2333
XmnI	GAANNNNTTC	1 cut(s)	2218
XspI	CTAG	6 cut(s)	1160, 1379, 1608, 1643, 1674, 1913
Zsp2I	ATGCAT	2 cut(s)	694, 1522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.