Rh3BG015600

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0009319
Physical Location & Seq
Reverse (-)
974556 .. 977272
2717 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG015600.1

Sequence Viewer

Length: 783 bp
ATGTCCACTCTCTTCCTCTCCCTCCCTACTTTCCCCTCCAAATTCCACCACCCAAACGACTCCGTTTCCGCTTCCGTAACCCTCCGCCCCTCCGCCGCCGTCTCCGCCCCCGAGAAGCGCACCCGACGCAAGAAGCGGCAGCCGAAGCGCGGCGACGATGACTCCTCCCTGTCCTCCTCGCCCTTATCCTCCTCCTCCGCCGCCGAGAAGAGCCTCCGTTTCACCTTCATGGAGGAGCTCATGTCCCGGGCCCGCAACCGCGACGCCGTCGGCGTCTCCGACGTAATCTACGACATGGTCGCCGCCGGCCTCACCCCTGGCCCTCGCTCCTTCCACGGATTGGTCGTCGCTCACGCCATGAACGGCGACGCCGAGTCCGCGATGCAAACGTTGAGAAGGGAGCTCAGTTCGGGGCTTCGTCCTCTCCACGAAACGTTTATCGCCTTGATTAGGTTGTTTGGCTCAAAAGGTCGAGCTACGAGGGGACTGGAAATCCTTGCAGCCATGGAGAAATTAAATTACGACATTCGCCAAGCTTGGATGCTTCTCGTTGAGGAGCTTGTTCGGACACGCTATTTGGAAGATGCCAACAGGGTGTTCTTGAAGGGTGCCAAAGGTGGGCTGAGAGCTACGGATGAGGTGTATGATCTTCTTATAGTGGAGGACTGTAAAGTCGGGGATCATTCTAATGCATTGGAAATTTCTTATGAGATGGAGGCAGCTGGGCGGATGGCAACAACTTTTCATTTCAATTGCCTTCTTAGTGTGCAGGTTGCTGATTGA

Protein Analysis

260

Amino Acids

28.72

Weight (kDa)

8.54

Isoelectric Point (pI)

50.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 73 - 171 9.7e-06 Pentacotripeptide-repeat region of PRORP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 671
Acc36I ACCTGC 1 cut(s) 760
AccB1I GGYRCC 1 cut(s) 608
AccB7I CCANNNNNTGG 1 cut(s) 340
AccII CGCG 3 cut(s) 150, 261, 380
AclI AACGTT 2 cut(s) 389, 434
AclWI GGATC 1 cut(s) 687
AcsI RAATTY 2 cut(s) 41, 699
AcyI GRCGYC 3 cut(s) 264, 273, 369
AfiI CCNNNNNNNGG 4 cut(s) 149, 340, 450, 618
AgsI TTSAA 2 cut(s) 604, 751
AhdI GACNNNNNGTC 1 cut(s) 373
AjnI CCWGG 1 cut(s) 316
AjuI GAANNNNNNNTTGG 2 cut(s) 581, 613
AluBI AGCT 7 cut(s) 238, 403, 476, 536, 559, 629, 722
AluI AGCT 7 cut(s) 238, 403, 476, 536, 559, 629, 722
Alw21I GWGCWC 2 cut(s) 240, 405
Alw26I GTCTC 2 cut(s) 106, 280
AlwI GGATC 1 cut(s) 687
Ama87I CYCGRG 2 cut(s) 110, 246
AoxI GGCC 3 cut(s) 249, 307, 319
ApaI GGGCCC 1 cut(s) 253
ApeKI GCWGC 3 cut(s) 139, 500, 719
ApoI RAATTY 2 cut(s) 41, 699
ArsI GACNNNNNNTTYG 2 cut(s) 559, 591
AspLEI GCGC 2 cut(s) 120, 150
AspS9I GGNCC 3 cut(s) 249, 250, 320
AsuC2I CCSGG 2 cut(s) 247, 248
AsuHPI GGTGA 2 cut(s) 214, 304
AvaI CYCGRG 2 cut(s) 110, 246
BaeGI GKGCMC 1 cut(s) 253
BanI GGYRCC 1 cut(s) 608
BanII GRGCYC 3 cut(s) 240, 253, 405
Bbv12I GWGCWC 2 cut(s) 240, 405
BbvI GCAGC 3 cut(s) 151, 512, 731
BccI CCATC 2 cut(s) 706, 724
BceAI ACGGC 3 cut(s) 83, 251, 379
BciT130I CCWGG 1 cut(s) 318
BcnI CCSGG 2 cut(s) 247, 248
BcoDI GTCTC 2 cut(s) 106, 280
BfuAI ACCTGC 1 cut(s) 760
BisI GCNGC 8 cut(s) 96, 137, 140, 151, 201, 303, 501, 720
BlsI GCNGC 8 cut(s) 97, 138, 141, 152, 202, 304, 502, 721
Bme1390I CCNGG 3 cut(s) 247, 248, 318
BmeRI GACNNNNNGTC 1 cut(s) 373
BmeT110I CYCGRG 2 cut(s) 110, 246
BmgT120I GGNCC 3 cut(s) 249, 250, 320
BmiI GGNNCC 2 cut(s) 251, 610
BmrFI CCNGG 3 cut(s) 247, 248, 318
BmsI GCATC 3 cut(s) 372, 531, 574
BpuMI CCSGG 2 cut(s) 247, 248
BsaHI GRCGYC 3 cut(s) 264, 273, 369
BsaJI CCNNGG 4 cut(s) 246, 316, 334, 504
BsaXI ACNNNNNCTCC 4 cut(s) 146, 176, 227, 257
Bsc4I CCNNNNNNNGG 4 cut(s) 149, 340, 450, 618
Bse118I RCCGGY 1 cut(s) 305
Bse1I ACTGG 1 cut(s) 492
BseBI CCWGG 1 cut(s) 318
BseDI CCNNGG 4 cut(s) 246, 316, 334, 504
BseGI GGATG 3 cut(s) 546, 640, 735
BseLI CCNNNNNNNGG 4 cut(s) 149, 340, 450, 618
BseMII CTCAG 2 cut(s) 418, 614
BseNI ACTGG 1 cut(s) 492
BseRI GAGGAG 6 cut(s) 154, 166, 181, 184, 248, 569
BseSI GKGCMC 1 cut(s) 253
BseXI GCAGC 3 cut(s) 151, 512, 731
BseYI CCCAGC 1 cut(s) 722
Bsh1236I CGCG 3 cut(s) 150, 261, 380
BshFI GGCC 3 cut(s) 251, 309, 321
BshNI GGYRCC 1 cut(s) 608
BsiHKAI GWGCWC 2 cut(s) 240, 405
BsiHKCI CYCGRG 2 cut(s) 110, 246
BsiSI CCGG 2 cut(s) 247, 306
BslFI GGGAC 2 cut(s) 229, 498
BslI CCNNNNNNNGG 4 cut(s) 149, 340, 450, 618
BsmAI GTCTC 2 cut(s) 106, 280
BsmBI CGTCTC 2 cut(s) 106, 280
BsmFI GGGAC 2 cut(s) 229, 498
BsnI GGCC 3 cut(s) 251, 309, 321
BsoBI CYCGRG 2 cut(s) 110, 246
Bsp120I GGGCCC 1 cut(s) 249
Bsp1286I GDGCHC 3 cut(s) 240, 253, 405
Bsp143I GATC 2 cut(s) 646, 679
Bsp19I CCATGG 1 cut(s) 504
BspANI GGCC 3 cut(s) 251, 309, 321
BspCNI CTCAG 2 cut(s) 417, 615
BspFNI CGCG 3 cut(s) 150, 261, 380
BspLI GGNNCC 2 cut(s) 251, 610
BspMI ACCTGC 1 cut(s) 760
BspPI GGATC 1 cut(s) 687
BspQI GCTCTTC 1 cut(s) 203
BspT107I GGYRCC 1 cut(s) 608
BsrFI RCCGGY 1 cut(s) 305
BsrI ACTGG 1 cut(s) 492
BssAI RCCGGY 1 cut(s) 305
BssECI CCNNGG 4 cut(s) 246, 316, 334, 504
BssMI GATC 2 cut(s) 646, 679
BssNI GRCGYC 3 cut(s) 264, 273, 369
BssT1I CCWWGG 1 cut(s) 504
Bst2UI CCWGG 1 cut(s) 318
Bst4CI ACNGT 1 cut(s) 668
Bst6I CTCTTC 2 cut(s) 17, 203
BstACI GRCGYC 3 cut(s) 264, 273, 369
BstC8I GCNNGC 2 cut(s) 253, 307
BstDEI CTNAG 3 cut(s) 404, 623, 761
BstDSI CCRYGG 2 cut(s) 334, 504
BstENI CCTNNNNNAGG 1 cut(s) 448
BstF5I GGATG 3 cut(s) 546, 640, 735
BstFNI CGCG 3 cut(s) 150, 261, 380
BstHHI GCGC 2 cut(s) 120, 150
BstKTI GATC 2 cut(s) 649, 682
BstMAI GTCTC 2 cut(s) 106, 280
BstMBI GATC 2 cut(s) 646, 679
BstMWI GCNNNNNNNGC 4 cut(s) 104, 126, 145, 377
BstNI CCWGG 1 cut(s) 318
BstSCI CCNGG 3 cut(s) 245, 246, 316
BstSLI GKGCMC 1 cut(s) 253
BstUI CGCG 3 cut(s) 150, 261, 380
BstV1I GCAGC 3 cut(s) 151, 512, 731
BsuRI GGCC 3 cut(s) 251, 309, 321
BtgI CCRYGG 2 cut(s) 334, 504
BtgZI GCGATG 1 cut(s) 395
BtsCI GGATG 3 cut(s) 546, 640, 735
BveI ACCTGC 1 cut(s) 760
Cac8I GCNNGC 2 cut(s) 253, 307
CfoI GCGC 2 cut(s) 120, 150
Cfr10I RCCGGY 1 cut(s) 305
Cfr13I GGNCC 3 cut(s) 249, 250, 320
Cfr9I CCCGGG 1 cut(s) 246
CseI GACGC 4 cut(s) 135, 262, 272, 377
CviAII CATG 5 cut(s) 229, 241, 295, 358, 505
DdeI CTNAG 3 cut(s) 404, 623, 761
DpnI GATC 2 cut(s) 648, 681
DpnII GATC 2 cut(s) 646, 679
DrdI GACNNNNNNGTC 1 cut(s) 671
DriI GACNNNNNGTC 1 cut(s) 373
DseDI GACNNNNNNGTC 1 cut(s) 671
Eam1104I CTCTTC 2 cut(s) 17, 203
Eam1105I GACNNNNNGTC 1 cut(s) 373
EarI CTCTTC 2 cut(s) 17, 203
EciI GGCGGA 5 cut(s) 74, 82, 94, 187, 742
Ecl136II GAGCTC 2 cut(s) 238, 403
Eco130I CCWWGG 1 cut(s) 504
Eco24I GRGCYC 3 cut(s) 240, 253, 405
Eco53kI GAGCTC 2 cut(s) 238, 403
Eco88I CYCGRG 2 cut(s) 110, 246
EcoICRI GAGCTC 2 cut(s) 238, 403
EcoNI CCTNNNNNAGG 1 cut(s) 448
EcoRII CCWGG 1 cut(s) 316
EcoT14I CCWWGG 1 cut(s) 504
EcoT22I ATGCAT 1 cut(s) 694
EcoT38I GRGCYC 3 cut(s) 240, 253, 405
ErhI CCWWGG 1 cut(s) 504
Esp3I CGTCTC 2 cut(s) 106, 280
FaeI CATG 5 cut(s) 232, 244, 298, 361, 508
FaiI YATR 8 cut(s) 230, 242, 296, 359, 506, 645, 656, 708
FaqI GGGAC 2 cut(s) 229, 498
FatI CATG 5 cut(s) 228, 240, 294, 357, 504
FauI CCCGC 1 cut(s) 260
Fnu4HI GCNGC 8 cut(s) 96, 137, 140, 151, 201, 303, 501, 720
FokI GGATG 3 cut(s) 553, 647, 742
FriOI GRGCYC 3 cut(s) 240, 253, 405
Fsp4HI GCNGC 8 cut(s) 96, 137, 140, 151, 201, 303, 501, 720
GlaI GCGC 2 cut(s) 119, 149
GluI GCNGC 8 cut(s) 96, 137, 140, 151, 201, 303, 501, 720
GsaI CCCAGC 1 cut(s) 726
HaeIII GGCC 3 cut(s) 251, 309, 321
HapII CCGG 2 cut(s) 247, 306
HgaI GACGC 4 cut(s) 135, 262, 272, 377
HhaI GCGC 2 cut(s) 120, 150
Hin1I GRCGYC 3 cut(s) 264, 273, 369
Hin1II CATG 5 cut(s) 232, 244, 298, 361, 508
Hin6I GCGC 2 cut(s) 118, 148
HinP1I GCGC 2 cut(s) 118, 148
HindIII AAGCTT 1 cut(s) 534
HinfI GANTC 3 cut(s) 59, 161, 374
HpaII CCGG 2 cut(s) 247, 306
HphI GGTGA 2 cut(s) 214, 304
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 2 cut(s) 280, 567
Hpy188III TCNNGA 1 cut(s) 601
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 7 cut(s) 129, 158, 266, 272, 284, 350, 371
HpyAV CCTTC 5 cut(s) 235, 340, 390, 598, 767
HpyCH4III ACNGT 1 cut(s) 668
HpyCH4IV ACGT 3 cut(s) 282, 389, 434
HpyCH4V TGCA 4 cut(s) 385, 500, 692, 769
HpyF10VI GCNNNNNNNGC 4 cut(s) 104, 126, 145, 377
HpyF3I CTNAG 3 cut(s) 404, 623, 761
HpySE526I ACGT 3 cut(s) 282, 389, 434
Hsp92I GRCGYC 3 cut(s) 264, 273, 369
Hsp92II CATG 5 cut(s) 232, 244, 298, 361, 508
HspAI GCGC 2 cut(s) 118, 148
KroI GCCGGC 1 cut(s) 305
KroNI GCCGGC 1 cut(s) 307
Kzo9I GATC 2 cut(s) 646, 679
LguI GCTCTTC 1 cut(s) 203
LmnI GCTCC 4 cut(s) 235, 332, 400, 556
LpnPI CCDG 9 cut(s) 182, 260, 303, 319, 330, 473, 577, 708, 755
Lsp1109I GCAGC 3 cut(s) 151, 512, 731
LweI GCATC 3 cut(s) 372, 531, 574
MaeII ACGT 3 cut(s) 282, 389, 434
MaeIII GTNAC 1 cut(s) 76
MalI GATC 2 cut(s) 648, 681
MboI GATC 2 cut(s) 646, 679
MboII GAAGA 4 cut(s) 4, 220, 593, 641
MfeI CAATTG 1 cut(s) 751
MhlI GDGCHC 3 cut(s) 240, 253, 405
MluCI AATT 5 cut(s) 41, 512, 517, 699, 751
MlyI GAGTC 3 cut(s) 53, 155, 383
MmeI TCCRAC 1 cut(s) 303
Mph1103I ATGCAT 1 cut(s) 694
MroNI GCCGGC 1 cut(s) 305
MseI TTAA 1 cut(s) 515
MslI CAYNNNNRTG 2 cut(s) 227, 687
MspA1I CMGCKG 1 cut(s) 722
MspI CCGG 2 cut(s) 247, 306
MspR9I CCNGG 3 cut(s) 247, 248, 318
MunI CAATTG 1 cut(s) 751
MvaI CCWGG 1 cut(s) 318
MvnI CGCG 3 cut(s) 150, 261, 380
MwoI GCNNNNNNNGC 4 cut(s) 104, 126, 145, 377
NaeI GCCGGC 1 cut(s) 307
NciI CCSGG 2 cut(s) 247, 248
NcoI CCATGG 1 cut(s) 504
NdeII GATC 2 cut(s) 646, 679
NgoMIV GCCGGC 1 cut(s) 305
NlaIII CATG 5 cut(s) 232, 244, 298, 361, 508
NlaIV GGNNCC 2 cut(s) 251, 610
NmeAIII GCCGAG 2 cut(s) 229, 397
NsiI ATGCAT 1 cut(s) 694
PciSI GCTCTTC 1 cut(s) 203
PcsI WCGNNNNNNNCGW 5 cut(s) 270, 276, 288, 342, 369
PdiI GCCGGC 1 cut(s) 307
PflFI GACNNNGTC 2 cut(s) 266, 296
PflMI CCANNNNNTGG 1 cut(s) 340
PkrI GCNGC 8 cut(s) 97, 138, 141, 152, 202, 304, 502, 721
PleI GAGTC 3 cut(s) 53, 155, 382
PpsI GAGTC 3 cut(s) 53, 155, 382
Psp124BI GAGCTC 2 cut(s) 240, 405
Psp1406I AACGTT 2 cut(s) 389, 434
Psp6I CCWGG 1 cut(s) 316
PspFI CCCAGC 1 cut(s) 722
PspGI CCWGG 1 cut(s) 316
PspN4I GGNNCC 2 cut(s) 251, 610
PspOMI GGGCCC 1 cut(s) 249
PspPI GGNCC 3 cut(s) 249, 250, 320
PsyI GACNNNGTC 2 cut(s) 266, 296
PvuII CAGCTG 1 cut(s) 722
RseI CAYNNNNRTG 2 cut(s) 227, 687
SacI GAGCTC 2 cut(s) 240, 405
SapI GCTCTTC 1 cut(s) 203
SaqAI TTAA 1 cut(s) 515
SatI GCNGC 8 cut(s) 96, 137, 140, 151, 201, 303, 501, 720
Sau3AI GATC 2 cut(s) 646, 679
Sau96I GGNCC 3 cut(s) 249, 250, 320
SchI GAGTC 3 cut(s) 53, 155, 383
ScrFI CCNGG 3 cut(s) 247, 248, 318
SduI GDGCHC 3 cut(s) 240, 253, 405
SfaNI GCATC 3 cut(s) 372, 531, 574
SmaI CCCGGG 1 cut(s) 248
SmiMI CAYNNNNRTG 2 cut(s) 227, 687
Sse9I AATT 5 cut(s) 41, 512, 517, 699, 751
SstI GAGCTC 2 cut(s) 240, 405
StyD4I CCNGG 3 cut(s) 245, 246, 316
StyI CCWWGG 1 cut(s) 504
TaaI ACNGT 1 cut(s) 668
TaiI ACGT 3 cut(s) 285, 392, 437
TaqI TCGA 1 cut(s) 472
TasI AATT 5 cut(s) 41, 512, 517, 699, 751
TauI GCSGC 5 cut(s) 98, 139, 153, 203, 305
Tru1I TTAA 1 cut(s) 515
Tru9I TTAA 1 cut(s) 515
TseI GCWGC 3 cut(s) 139, 500, 719
TspDTI ATGAA 3 cut(s) 217, 374, 734
TspGWI ACGGA 5 cut(s) 52, 64, 206, 351, 647
TspMI CCCGGG 1 cut(s) 246
Tth111I GACNNNGTC 2 cut(s) 266, 296
Van91I CCANNNNNTGG 1 cut(s) 340
XagI CCTNNNNNAGG 1 cut(s) 448
XapI RAATTY 2 cut(s) 41, 699
XmaI CCCGGG 1 cut(s) 246
Zsp2I ATGCAT 1 cut(s) 694
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.