Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011183

Physical Location & Seq

Genomic Coordinates Reverse (-)

1266056 .. 1268378

Gene Structure 2323 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G04670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGAGGAAGTTGAAGCTGCTAACAGATCAGCTATAGAAAGCTGTCATGGAGTGTTAAATCTCTTGTCACAACGAACCAGTGATCCCAAATCCTTAACGGTTGAAACAGGAGAAGTAGTTTCCAAGTTCAAAAGAGTAGCTTCTCTGTTAACTAGAGGGTTAGGCCATGGAAAGTTTAGGAGTACCAACAAGTTTAGGTCATCTTTTCCTCAACACATCTTCTTAGAGAGTCCTATTTGCTGCGGTAATGATCTAAGTGGTGATTACACTCAAGTTCTTGCACCAGAGCCACTTCAGATGGTTCCAGCTTCTGCTGTTTATAATGAAATGGAGCCAAAACACCAATTGGGTCATCCTTCATTAATGCTTAGTCACAAAATGTGTGTTGACAAGTCGTTTCTGGAGTTAAAGCCACCTCCTTTTCGTGCTCCTTATCAGTTAATCCACAACCACCAGCAGATAGCTTACTCCAGGAGTAATAGCGGTGTAAACCTTAAGTTTGATGGATCTGGTAGTAGTTGCTATACTCCGAGTGTATCAAACGGATCAAGATCATTTGTGTCATCTCTTAGCATGGATGCTAGTGTAACAGACTACGATAGGAACTCGTTCCATTTGACCGGATTGTCCCGTGGGTCTGACCAACAGCATACCCGGAAGATGTGCTCTGGTAGTTTGAAATGCGGAAGTCGAAGCAAATGTCACTGTTCCAAGAAAAGGAAACTGAGGGTAAAACGATCAATCAAGGTGCCTGCAATCAGTAACAAGATTGCAGACATTCCTCCAGATGAGTATTCTTGGAGGAAGTATGGACAGAAACCGATAAAGGGTTCACCGCATCCACGGGGATACTATAAATGCAGCAGTGTGAGAGGTTGTCCAGCAAGGAAGCATGTGGAGCGATGTATTGATGAAACTTCAATGTTAATTGTAACTTACGAAGGCGAGCATAACCATTCAAGAATATTGTCTTCACAATCAGCTCACACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_zn_clust WRKY

Protein Analysis

330

Amino Acids

36.72

Weight (kDa)

9.47

Isoelectric Point (pI)

50.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plant_zn_clust	PF10533	220 - 259	1e-15	Plant zinc cluster domain
WRKY	PF03106	263 - 319	1.1e-26	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04670 AT3G04670 AT5G28650
fragaria_vesca	FvH4_6g02660 FvH4_6g02660
malus_domestica	MD04G1226400.v1.1 MD12G1243400.v1.1
prunus_persica	Prupe.6G345100_v2.0.a1
pyrus_communis	pycom04g19960 pycom12g22250
rosa_chinensis	RchiOBHm_Chr3g0450591
rosa_laevigata	RLG00000025718
rosa_multiflora	Rmu_sc0000078.1_g000042
rosa_roxburghii	Rroxscaffold_6G00428290
rosa_rugosa	Rorug02G0629000
rosa_samantha	Rh3AG029700 Rh3BG030100 Rh3CG029000 Rh3DG029800
rosa_wichuraiana	Rw3G002290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	321
AasI	GACNNNNNNGTC	1 cut(s)	625
AccB1I	GGYRCC	1 cut(s)	748
AciI	CCGC	4 cut(s)	243, 483, 684, 836
AclWI	GGATC	3 cut(s)	77, 514, 553
AcuI	CTGAAG	1 cut(s)	278
AfaI	GTAC	1 cut(s)	184
AfiI	CCNNNNNNNGG	2 cut(s)	717, 827
AflII	CTTAAG	1 cut(s)	494
AgsI	TTSAA	6 cut(s)	14, 104, 130, 679, 921, 960
AjnI	CCWGG	1 cut(s)	470
AloI	GAACNNNNNNTCC	2 cut(s)	67, 99
AluBI	AGCT	7 cut(s)	17, 32, 42, 140, 308, 464, 983
AluI	AGCT	7 cut(s)	17, 32, 42, 140, 308, 464, 983
Alw21I	GWGCWC	2 cut(s)	430, 668
AlwI	GGATC	3 cut(s)	77, 514, 553
AlwNI	CAGNNNCTG	1 cut(s)	311
AoxI	GGCC	1 cut(s)	163
ApeKI	GCWGC	3 cut(s)	17, 240, 861
ArsI	GACNNNNNNTTYG	2 cut(s)	685, 717
AseI	ATTAAT	1 cut(s)	362
Asp700I	GAANNNNTTC	1 cut(s)	608
AsuC2I	CCSGG	1 cut(s)	655
AsuHPI	GGTGA	2 cut(s)	272, 825
BanI	GGYRCC	1 cut(s)	748
BbsI	GAAGAC	1 cut(s)	963
Bbv12I	GWGCWC	2 cut(s)	430, 668
BbvI	GCAGC	3 cut(s)	4, 227, 873
BccI	CCATC	2 cut(s)	292, 497
BciT130I	CCWGG	1 cut(s)	472
BciVI	GTATCC	1 cut(s)	842
BcnI	CCSGG	1 cut(s)	655
BfaI	CTAG	2 cut(s)	153, 582
BfmI	CTRYAG	1 cut(s)	33
BfrI	CTTAAG	1 cut(s)	494
BfuI	GTATCC	1 cut(s)	842
BisI	GCNGC	3 cut(s)	18, 241, 862
BlsI	GCNGC	3 cut(s)	19, 242, 863
Bme1390I	CCNGG	2 cut(s)	472, 655
BmiI	GGNNCC	3 cut(s)	303, 333, 750
BmrFI	CCNGG	2 cut(s)	472, 655
BmsI	GCATC	2 cut(s)	568, 847
BpiI	GAAGAC	1 cut(s)	963
BpmI	CTGGAG	3 cut(s)	422, 454, 768
BpuEI	CTTGAG	1 cut(s)	255
BpuMI	CCSGG	1 cut(s)	655
BsaBI	GATNNNNATC	1 cut(s)	550
BsaJI	CCNNGG	3 cut(s)	166, 631, 842
BsaWI	WCCGGW	1 cut(s)	620
BsaXI	ACNNNNNCTCC	2 cut(s)	102, 132
Bsc4I	CCNNNNNNNGG	2 cut(s)	717, 827
Bse1I	ACTGG	1 cut(s)	78
Bse8I	GATNNNNATC	1 cut(s)	550
BseBI	CCWGG	1 cut(s)	472
BseDI	CCNNGG	3 cut(s)	166, 631, 842
BseGI	GGATG	3 cut(s)	352, 583, 838
BseJI	GATNNNNATC	1 cut(s)	550
BseLI	CCNNNNNNNGG	2 cut(s)	717, 827
BseMII	CTCAG	1 cut(s)	716
BseNI	ACTGG	1 cut(s)	78
BseXI	GCAGC	3 cut(s)	4, 227, 873
BshFI	GGCC	1 cut(s)	165
BshNI	GGYRCC	1 cut(s)	748
BsiHKAI	GWGCWC	2 cut(s)	430, 668
BsiSI	CCGG	2 cut(s)	621, 655
BslFI	GGGAC	1 cut(s)	613
BslI	CCNNNNNNNGG	2 cut(s)	717, 827
BsmFI	GGGAC	1 cut(s)	613
BsnI	GGCC	1 cut(s)	165
Bsp1286I	GDGCHC	2 cut(s)	430, 668
Bsp143I	GATC	7 cut(s)	26, 82, 250, 506, 545, 551, 737
Bsp19I	CCATGG	1 cut(s)	166
BspACI	CCGC	4 cut(s)	243, 483, 684, 836
BspANI	GGCC	1 cut(s)	165
BspCNI	CTCAG	1 cut(s)	717
BspLI	GGNNCC	3 cut(s)	303, 333, 750
BspPI	GGATC	3 cut(s)	77, 514, 553
BspT107I	GGYRCC	1 cut(s)	748
BspTI	CTTAAG	1 cut(s)	494
BsrI	ACTGG	1 cut(s)	78
BssECI	CCNNGG	3 cut(s)	166, 631, 842
BssMI	GATC	7 cut(s)	26, 82, 250, 506, 545, 551, 737
BssT1I	CCWWGG	1 cut(s)	166
Bst2UI	CCWGG	1 cut(s)	472
Bst4CI	ACNGT	2 cut(s)	100, 707
BstAFI	CTTAAG	1 cut(s)	494
BstC8I	GCNNGC	2 cut(s)	753, 947
BstDEI	CTNAG	5 cut(s)	223, 254, 368, 569, 725
BstDSI	CCRYGG	3 cut(s)	166, 631, 842
BstF5I	GGATG	3 cut(s)	352, 583, 838
BstKTI	GATC	7 cut(s)	29, 85, 253, 509, 548, 554, 740
BstMBI	GATC	7 cut(s)	26, 82, 250, 506, 545, 551, 737
BstMWI	GCNNNNNNNGC	1 cut(s)	898
BstNI	CCWGG	1 cut(s)	472
BstNSI	RCATGY	1 cut(s)	896
BstSCI	CCNGG	2 cut(s)	470, 653
BstSFI	CTRYAG	1 cut(s)	33
BstV1I	GCAGC	3 cut(s)	4, 227, 873
BstV2I	GAAGAC	1 cut(s)	963
BstX2I	RGATCY	1 cut(s)	506
BstYI	RGATCY	1 cut(s)	506
BsuI	GTATCC	1 cut(s)	842
BsuRI	GGCC	1 cut(s)	165
BtgI	CCRYGG	3 cut(s)	166, 631, 842
BtgZI	GCGATG	1 cut(s)	916
BtsCI	GGATG	3 cut(s)	352, 583, 838
BtsI	GCAGTG	1 cut(s)	871
BtsIMutI	CAGTG	3 cut(s)	85, 703, 871
Cac8I	GCNNGC	2 cut(s)	753, 947
CaiI	CAGNNNCTG	1 cut(s)	311
Csp6I	GTAC	1 cut(s)	183
CviAII	CATG	4 cut(s)	47, 167, 574, 893
CviQI	GTAC	1 cut(s)	183
DdeI	CTNAG	5 cut(s)	223, 254, 368, 569, 725
DpnI	GATC	7 cut(s)	28, 84, 252, 508, 547, 553, 739
DpnII	GATC	7 cut(s)	26, 82, 250, 506, 545, 551, 737
DrdI	GACNNNNNNGTC	1 cut(s)	625
DseDI	GACNNNNNNGTC	1 cut(s)	625
Eco130I	CCWWGG	1 cut(s)	166
Eco57I	CTGAAG	1 cut(s)	278
EcoRII	CCWGG	1 cut(s)	470
EcoT14I	CCWWGG	1 cut(s)	166
ErhI	CCWWGG	1 cut(s)	166
FaeI	CATG	4 cut(s)	50, 170, 577, 896
FalI	AAGNNNNNCTT	2 cut(s)	124, 156
FaqI	GGGAC	1 cut(s)	613
FatI	CATG	4 cut(s)	46, 166, 573, 892
Fnu4HI	GCNGC	3 cut(s)	18, 241, 862
FokI	GGATG	3 cut(s)	339, 590, 825
Fsp4HI	GCNGC	3 cut(s)	18, 241, 862
FspBI	CTAG	2 cut(s)	153, 582
GluI	GCNGC	3 cut(s)	18, 241, 862
GsuI	CTGGAG	3 cut(s)	422, 454, 768
HaeIII	GGCC	1 cut(s)	165
HapII	CCGG	2 cut(s)	621, 655
Hin1II	CATG	4 cut(s)	50, 170, 577, 896
HincII	GTYRAC	2 cut(s)	150, 388
HindII	GTYRAC	2 cut(s)	150, 388
HinfI	GANTC	1 cut(s)	229
HpaI	GTTAAC	1 cut(s)	150
HpaII	CCGG	2 cut(s)	621, 655
HphI	GGTGA	2 cut(s)	272, 825
Hpy166II	GTNNAC	4 cut(s)	150, 388, 490, 833
Hpy188I	TCNGA	3 cut(s)	297, 531, 640
Hpy188III	TCNNGA	4 cut(s)	401, 549, 785, 960
Hpy8I	GTNNAC	4 cut(s)	150, 388, 490, 833
HpyAV	CCTTC	2 cut(s)	366, 935
HpyCH4III	ACNGT	2 cut(s)	100, 707
HpyCH4V	TGCA	4 cut(s)	281, 755, 773, 861
HpyF10VI	GCNNNNNNNGC	1 cut(s)	898
HpyF3I	CTNAG	5 cut(s)	223, 254, 368, 569, 725
Hsp92II	CATG	4 cut(s)	50, 170, 577, 896
KspAI	GTTAAC	1 cut(s)	150
Kzo9I	GATC	7 cut(s)	26, 82, 250, 506, 545, 551, 737
LmnI	GCTCC	3 cut(s)	331, 433, 898
Lsp1109I	GCAGC	3 cut(s)	4, 227, 873
LweI	GCATC	2 cut(s)	568, 847
MaeI	CTAG	2 cut(s)	153, 582
MaeIII	GTNAC	6 cut(s)	66, 371, 586, 701, 761, 931
MalI	GATC	7 cut(s)	28, 84, 252, 508, 547, 553, 739
MboI	GATC	7 cut(s)	26, 82, 250, 506, 545, 551, 737
MboII	GAAGA	3 cut(s)	211, 670, 963
MfeI	CAATTG	1 cut(s)	344
MflI	RGATCY	1 cut(s)	506
MhlI	GDGCHC	2 cut(s)	430, 668
MluCI	AATT	2 cut(s)	344, 927
MlyI	GAGTC	1 cut(s)	238
MnlI	CCTC	7 cut(s)	149, 219, 426, 720, 792, 795, 866
MroXI	GAANNNNTTC	1 cut(s)	608
MseI	TTAA	8 cut(s)	56, 95, 149, 362, 407, 440, 495, 926
MspCI	CTTAAG	1 cut(s)	494
MspI	CCGG	2 cut(s)	621, 655
MspR9I	CCNGG	2 cut(s)	472, 655
MunI	CAATTG	1 cut(s)	344
MvaI	CCWGG	1 cut(s)	472
MwoI	GCNNNNNNNGC	1 cut(s)	898
NciI	CCSGG	1 cut(s)	655
NcoI	CCATGG	1 cut(s)	166
NdeII	GATC	7 cut(s)	26, 82, 250, 506, 545, 551, 737
NlaIII	CATG	4 cut(s)	50, 170, 577, 896
NlaIV	GGNNCC	3 cut(s)	303, 333, 750
NmuCI	GTSAC	3 cut(s)	66, 371, 701
NspI	RCATGY	1 cut(s)	896
PdmI	GAANNNNTTC	1 cut(s)	608
PfoI	TCCNGGA	1 cut(s)	470
PkrI	GCNGC	3 cut(s)	19, 242, 863
PleI	GAGTC	1 cut(s)	237
PpsI	GAGTC	1 cut(s)	237
PshBI	ATTAAT	1 cut(s)	362
PsiI	TTATAA	1 cut(s)	321
Psp6I	CCWGG	1 cut(s)	470
PspGI	CCWGG	1 cut(s)	470
PspN4I	GGNNCC	3 cut(s)	303, 333, 750
PstNI	CAGNNNCTG	1 cut(s)	311
PsuI	RGATCY	1 cut(s)	506
RsaI	GTAC	1 cut(s)	184
RsaNI	GTAC	1 cut(s)	183
SaqAI	TTAA	8 cut(s)	56, 95, 149, 362, 407, 440, 495, 926
SatI	GCNGC	3 cut(s)	18, 241, 862
Sau3AI	GATC	7 cut(s)	26, 82, 250, 506, 545, 551, 737
SchI	GAGTC	1 cut(s)	238
ScrFI	CCNGG	2 cut(s)	472, 655
SduI	GDGCHC	2 cut(s)	430, 668
SfaNI	GCATC	2 cut(s)	568, 847
SfcI	CTRYAG	1 cut(s)	33
SmlI	CTYRAG	2 cut(s)	270, 494
SmoI	CTYRAG	2 cut(s)	270, 494
Sse9I	AATT	2 cut(s)	344, 927
SsiI	CCGC	4 cut(s)	243, 483, 684, 836
SspI	AATATT	1 cut(s)	966
SspMI	CTAG	2 cut(s)	153, 582
StyD4I	CCNGG	2 cut(s)	470, 653
StyI	CCWWGG	1 cut(s)	166
TaaI	ACNGT	2 cut(s)	100, 707
TaqI	TCGA	1 cut(s)	691
TasI	AATT	2 cut(s)	344, 927
Tru1I	TTAA	8 cut(s)	56, 95, 149, 362, 407, 440, 495, 926
Tru9I	TTAA	8 cut(s)	56, 95, 149, 362, 407, 440, 495, 926
TscAI	CASTG	3 cut(s)	85, 710, 871
TseFI	GTSAC	3 cut(s)	66, 371, 701
TseI	GCWGC	3 cut(s)	17, 240, 861
Tsp45I	GTSAC	3 cut(s)	66, 371, 701
TspDTI	ATGAA	3 cut(s)	339, 348, 927
TspGWI	ACGGA	1 cut(s)	558
TspRI	CASTG	3 cut(s)	85, 710, 871
Vha464I	CTTAAG	1 cut(s)	494
VspI	ATTAAT	1 cut(s)	362
XceI	RCATGY	1 cut(s)	896
XmnI	GAANNNNTTC	1 cut(s)	608
XspI	CTAG	2 cut(s)	153, 582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.