Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0011183

Physical Location & Seq

Genomic Coordinates Reverse (-)

48733713 .. 48735692

Gene Structure 1980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00428290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGAGGAGGTTGAATCAGCTAACAAAGCAGCAGTAGAGAGTTGCCATACAGTTCTTAACAGTCTCTTGTGCAAACCCAAAAATGATATTCAGTCTAAAAGTTTAGGGGTGCAGACTGAGGAGGCTGTGGTGAAGTTCAAGAGAGTTGTGTCTCTTCTGAGTCATGGAAGAAGGATCAGAAAGTTGAAGAAGAAGCTGGACTCATCTTTGCCTCAAAGCCTCTTCTTGGATGGCCCTAATTACAGATCAGACATTTCAAGCAAAACCCTCCAATTACTCCCAGCTACTTTTCCTCATAACCTACACACACAAAACCAGAAAGTGTTTCTAGGAAACCCAGTGTTGGATATGAGTATCAAGCTTCCTCTCCAAATTGCCAAACCAAAACCATTGCAGCAGTTACATAGACTTCAAGTCCATCCCCAACAGTTCACCGGCATAAACCTTGCATTTAACAAGCCTAGCACCACACCCTCCTTGTCAAACGCAGCGTCGTTCATATCATGTTTGAGCATGGATGCTGGTGGTGTGGCTAACTATGGCAGCAACTCCTTCAGACTAATCAATGGCAGCGTGCCACGGTCGTCTGATCAGATCTCGCAACAACAGAGGAGCAGTGGTGCAGAGCAAAGCAGCAGTGTAAAATGTGGCAGTAATGATAAGTGTCCTAATTCAAGGAAGAGGAGACTGAGGGTGAGAAGATCTTTCAAGGTTCCTGCAGTGAGTCAGAATGTTGCAAACATTCCTGGTGATGAGTATTCATGGAGGAAATATGGGCAGAAGCCAATCAAGGGCTCTCCTTATCCTAGGGGATATTATAAATGTAGCAGCATGAGAGGCTGCCCAGCAAGGAAACATGTCGAGCGATGCGTGGAAGACCCTTCAATGCTGATAGTCACCTATGAGGGCGAGCACAAGCATTCGCAATCTGCGCATCAATCAGAATGTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_zn_clust WRKY

Protein Analysis

317

Amino Acids

35.2

Weight (kDa)

9.84

Isoelectric Point (pI)

61.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plant_zn_clust	PF10533	208 - 246	7.9e-08	Plant zinc cluster domain
WRKY	PF03106	251 - 307	4.7e-27	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04670 AT3G04670 AT5G28650
fragaria_vesca	FvH4_6g02660 FvH4_6g02660
malus_domestica	MD04G1226400.v1.1 MD12G1243400.v1.1
prunus_persica	Prupe.6G345100_v2.0.a1
pyrus_communis	pycom04g19960 pycom12g22250
rosa_chinensis	RchiOBHm_Chr3g0450591
rosa_laevigata	RLG00000025718
rosa_multiflora	Rmu_sc0000078.1_g000042
rosa_roxburghii	Rroxscaffold_6G00428290
rosa_rugosa	Rorug02G0629000
rosa_samantha	Rh3AG029700 Rh3BG030100 Rh3CG029000 Rh3DG029800
rosa_wichuraiana	Rw3G002290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	819
Acc16I	TGCGCA	1 cut(s)	933
AclWI	GGATC	1 cut(s)	182
AcuI	CTGAAG	1 cut(s)	538
AfiI	CCNNNNNNNGG	3 cut(s)	226, 343, 791
AflIII	ACRYGT	1 cut(s)	856
AgsI	TTSAA	8 cut(s)	14, 139, 187, 258, 413, 675, 709, 885
AhdI	GACNNNNNGTC	1 cut(s)	413
AjnI	CCWGG	1 cut(s)	745
AluBI	AGCT	4 cut(s)	20, 196, 284, 361
AluI	AGCT	4 cut(s)	20, 196, 284, 361
Alw21I	GWGCWC	1 cut(s)	915
Alw26I	GTCTC	3 cut(s)	68, 156, 679
AlwI	GGATC	1 cut(s)	182
AoxI	GGCC	1 cut(s)	232
ApeKI	GCWGC	8 cut(s)	29, 394, 488, 543, 570, 633, 828, 840
ArsI	GACNNNNNNTTYG	2 cut(s)	476, 508
AspA2I	CCTAGG	1 cut(s)	806
AspLEI	GCGC	1 cut(s)	934
AspS9I	GGNCC	1 cut(s)	233
AsuHPI	GGTGA	5 cut(s)	142, 424, 706, 761, 889
AvrII	CCTAGG	1 cut(s)	806
BanII	GRGCYC	1 cut(s)	797
BbsI	GAAGAC	1 cut(s)	882
Bbv12I	GWGCWC	1 cut(s)	915
BbvI	GCAGC	8 cut(s)	41, 406, 500, 555, 582, 645, 827, 840
BccI	CCATC	2 cut(s)	224, 426
BciT130I	CCWGG	1 cut(s)	747
BclI	TGATCA	1 cut(s)	589
BcoDI	GTCTC	3 cut(s)	68, 156, 679
BfaI	CTAG	3 cut(s)	329, 462, 807
BfmI	CTRYAG	1 cut(s)	717
BglII	AGATCT	2 cut(s)	594, 701
BisI	GCNGC	8 cut(s)	30, 395, 489, 544, 571, 634, 829, 841
BlnI	CCTAGG	1 cut(s)	806
BlsI	GCNGC	8 cut(s)	31, 396, 490, 545, 572, 635, 830, 842
Bme1390I	CCNGG	1 cut(s)	747
BmeRI	GACNNNNNGTC	1 cut(s)	413
BmgT120I	GGNCC	1 cut(s)	233
BmiI	GGNNCC	1 cut(s)	714
BmrFI	CCNGG	1 cut(s)	747
BmrI	ACTGGG	1 cut(s)	332
BmsI	GCATC	3 cut(s)	508, 857, 943
BmuI	ACTGGG	1 cut(s)	332
BpiI	GAAGAC	1 cut(s)	882
BsaJI	CCNNGG	2 cut(s)	578, 806
BsaXI	ACNNNNNCTCC	2 cut(s)	604, 634
Bsc4I	CCNNNNNNNGG	3 cut(s)	226, 343, 791
Bse118I	RCCGGY	1 cut(s)	434
Bse1I	ACTGG	1 cut(s)	338
Bse3DI	GCAATG	1 cut(s)	389
BseBI	CCWGG	1 cut(s)	747
BseDI	CCNNGG	2 cut(s)	578, 806
BseGI	GGATG	3 cut(s)	235, 418, 523
BseLI	CCNNNNNNNGG	3 cut(s)	226, 343, 791
BseMI	GCAATG	1 cut(s)	389
BseMII	CTCAG	3 cut(s)	108, 149, 680
BseNI	ACTGG	1 cut(s)	338
BseRI	GAGGAG	4 cut(s)	20, 134, 625, 697
BseXI	GCAGC	8 cut(s)	41, 406, 500, 555, 582, 645, 827, 840
BseYI	CCCAGC	2 cut(s)	280, 844
BsgI	GTGCAG	2 cut(s)	131, 642
Bsh1285I	CGRYCG	1 cut(s)	584
BshFI	GGCC	1 cut(s)	234
BsiEI	CGRYCG	1 cut(s)	584
BsiHKAI	GWGCWC	1 cut(s)	915
BsiSI	CCGG	1 cut(s)	435
BslI	CCNNNNNNNGG	3 cut(s)	226, 343, 791
BsmAI	GTCTC	3 cut(s)	68, 156, 679
BsmI	GAATGC	1 cut(s)	919
BsnI	GGCC	1 cut(s)	234
Bsp1286I	GDGCHC	2 cut(s)	797, 915
Bsp143I	GATC	5 cut(s)	174, 245, 589, 594, 701
BspANI	GGCC	1 cut(s)	234
BspCNI	CTCAG	3 cut(s)	109, 150, 681
BspLI	GGNNCC	1 cut(s)	714
BspMAI	CTGCAG	1 cut(s)	721
BspPI	GGATC	1 cut(s)	182
BsrDI	GCAATG	1 cut(s)	389
BsrFI	RCCGGY	1 cut(s)	434
BsrI	ACTGG	1 cut(s)	338
BssAI	RCCGGY	1 cut(s)	434
BssECI	CCNNGG	2 cut(s)	578, 806
BssMI	GATC	5 cut(s)	174, 245, 589, 594, 701
BssT1I	CCWWGG	1 cut(s)	806
Bst2UI	CCWGG	1 cut(s)	747
Bst4CI	ACNGT	4 cut(s)	52, 62, 429, 582
Bst6I	CTCTTC	3 cut(s)	159, 227, 674
BstC8I	GCNNGC	2 cut(s)	575, 911
BstDEI	CTNAG	3 cut(s)	117, 158, 689
BstDSI	CCRYGG	1 cut(s)	578
BstF5I	GGATG	3 cut(s)	235, 418, 523
BstHHI	GCGC	1 cut(s)	934
BstKTI	GATC	5 cut(s)	177, 248, 592, 597, 704
BstMAI	GTCTC	3 cut(s)	68, 156, 679
BstMBI	GATC	5 cut(s)	174, 245, 589, 594, 701
BstMCI	CGRYCG	1 cut(s)	584
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 837, 931
BstNI	CCWGG	1 cut(s)	747
BstNSI	RCATGY	1 cut(s)	860
BstSCI	CCNGG	1 cut(s)	745
BstSFI	CTRYAG	1 cut(s)	717
BstV1I	GCAGC	8 cut(s)	41, 406, 500, 555, 582, 645, 827, 840
BstV2I	GAAGAC	1 cut(s)	882
BstX2I	RGATCY	2 cut(s)	594, 701
BstYI	RGATCY	2 cut(s)	594, 701
BsuRI	GGCC	1 cut(s)	234
BtgI	CCRYGG	1 cut(s)	578
BtgZI	GCGATG	1 cut(s)	880
BtsCI	GGATG	3 cut(s)	235, 418, 523
BtsI	GCAGTG	3 cut(s)	622, 643, 726
BtsIMutI	CAGTG	4 cut(s)	345, 622, 643, 726
Cac8I	GCNNGC	2 cut(s)	575, 911
CfoI	GCGC	1 cut(s)	934
Cfr10I	RCCGGY	1 cut(s)	434
Cfr13I	GGNCC	1 cut(s)	233
CseI	GACGC	1 cut(s)	480
CviAII	CATG	6 cut(s)	164, 504, 514, 762, 832, 857
DdeI	CTNAG	3 cut(s)	117, 158, 689
DpnI	GATC	5 cut(s)	176, 247, 591, 596, 703
DpnII	GATC	5 cut(s)	174, 245, 589, 594, 701
DriI	GACNNNNNGTC	1 cut(s)	413
Eam1104I	CTCTTC	3 cut(s)	159, 227, 674
Eam1105I	GACNNNNNGTC	1 cut(s)	413
EarI	CTCTTC	3 cut(s)	159, 227, 674
Eco130I	CCWWGG	1 cut(s)	806
Eco24I	GRGCYC	1 cut(s)	797
Eco57I	CTGAAG	1 cut(s)	538
EcoRII	CCWGG	1 cut(s)	745
EcoT14I	CCWWGG	1 cut(s)	806
EcoT38I	GRGCYC	1 cut(s)	797
ErhI	CCWWGG	1 cut(s)	806
FaeI	CATG	6 cut(s)	167, 507, 517, 765, 835, 860
FatI	CATG	6 cut(s)	163, 503, 513, 761, 831, 856
FbaI	TGATCA	1 cut(s)	589
Fnu4HI	GCNGC	8 cut(s)	30, 395, 489, 544, 571, 634, 829, 841
FokI	GGATG	3 cut(s)	242, 405, 530
FriOI	GRGCYC	1 cut(s)	797
Fsp4HI	GCNGC	8 cut(s)	30, 395, 489, 544, 571, 634, 829, 841
FspBI	CTAG	3 cut(s)	329, 462, 807
FspI	TGCGCA	1 cut(s)	933
GlaI	GCGC	1 cut(s)	933
GluI	GCNGC	8 cut(s)	30, 395, 489, 544, 571, 634, 829, 841
GsaI	CCCAGC	2 cut(s)	284, 848
HaeIII	GGCC	1 cut(s)	234
HapII	CCGG	1 cut(s)	435
HgaI	GACGC	1 cut(s)	480
HhaI	GCGC	1 cut(s)	934
Hin1II	CATG	6 cut(s)	167, 507, 517, 765, 835, 860
Hin6I	GCGC	1 cut(s)	932
HinP1I	GCGC	1 cut(s)	932
HindIII	AAGCTT	1 cut(s)	359
HinfI	GANTC	4 cut(s)	14, 160, 200, 724
HpaII	CCGG	1 cut(s)	435
HphI	GGTGA	5 cut(s)	142, 424, 706, 761, 889
Hpy166II	GTNNAC	1 cut(s)	432
Hpy188I	TCNGA	8 cut(s)	159, 179, 250, 557, 589, 594, 729, 943
Hpy188III	TCNNGA	1 cut(s)	139
Hpy8I	GTNNAC	1 cut(s)	432
Hpy99I	CGWCG	1 cut(s)	496
HpyAV	CCTTC	3 cut(s)	165, 562, 891
HpyCH4III	ACNGT	4 cut(s)	52, 62, 429, 582
HpyCH4V	TGCA	7 cut(s)	72, 112, 394, 449, 623, 719, 737
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 837, 931
HpyF3I	CTNAG	3 cut(s)	117, 158, 689
Hsp92II	CATG	6 cut(s)	167, 507, 517, 765, 835, 860
HspAI	GCGC	1 cut(s)	932
Ksp22I	TGATCA	1 cut(s)	589
Kzo9I	GATC	5 cut(s)	174, 245, 589, 594, 701
LmnI	GCTCC	1 cut(s)	612
Lsp1109I	GCAGC	8 cut(s)	41, 406, 500, 555, 582, 645, 827, 840
LweI	GCATC	3 cut(s)	508, 857, 943
MaeI	CTAG	3 cut(s)	329, 462, 807
MaeIII	GTNAC	2 cut(s)	399, 895
MalI	GATC	5 cut(s)	176, 247, 591, 596, 703
MboI	GATC	5 cut(s)	174, 245, 589, 594, 701
MboII	GAAGA	8 cut(s)	146, 180, 199, 202, 214, 691, 711, 887
MflI	RGATCY	2 cut(s)	594, 701
MhlI	GDGCHC	2 cut(s)	797, 915
MluCI	AATT	4 cut(s)	238, 272, 372, 670
MlyI	GAGTC	3 cut(s)	169, 194, 733
MmeI	TCCRAC	1 cut(s)	324
MseI	TTAA	2 cut(s)	57, 453
MspI	CCGG	1 cut(s)	435
MspR9I	CCNGG	1 cut(s)	747
Mva1269I	GAATGC	1 cut(s)	919
MvaI	CCWGG	1 cut(s)	747
MwoI	GCNNNNNNNGC	3 cut(s)	26, 837, 931
NdeII	GATC	5 cut(s)	174, 245, 589, 594, 701
NlaIII	CATG	6 cut(s)	167, 507, 517, 765, 835, 860
NlaIV	GGNNCC	1 cut(s)	714
NmuCI	GTSAC	1 cut(s)	895
NsbI	TGCGCA	1 cut(s)	933
NspI	RCATGY	1 cut(s)	860
PciI	ACATGT	1 cut(s)	856
PcsI	WCGNNNNNNNCGW	1 cut(s)	867
PctI	GAATGC	1 cut(s)	919
PfeI	GAWTC	1 cut(s)	14
PkrI	GCNGC	8 cut(s)	31, 396, 490, 545, 572, 635, 830, 842
PleI	GAGTC	3 cut(s)	168, 194, 732
PpsI	GAGTC	3 cut(s)	168, 194, 732
PscI	ACATGT	1 cut(s)	856
PsiI	TTATAA	1 cut(s)	819
Psp6I	CCWGG	1 cut(s)	745
PspFI	CCCAGC	2 cut(s)	280, 844
PspGI	CCWGG	1 cut(s)	745
PspN4I	GGNNCC	1 cut(s)	714
PspPI	GGNCC	1 cut(s)	233
PstI	CTGCAG	1 cut(s)	721
PsuI	RGATCY	2 cut(s)	594, 701
SaqAI	TTAA	2 cut(s)	57, 453
SatI	GCNGC	8 cut(s)	30, 395, 489, 544, 571, 634, 829, 841
Sau3AI	GATC	5 cut(s)	174, 245, 589, 594, 701
Sau96I	GGNCC	1 cut(s)	233
SchI	GAGTC	3 cut(s)	169, 194, 733
ScrFI	CCNGG	1 cut(s)	747
SduI	GDGCHC	2 cut(s)	797, 915
SetI	ASST	9 cut(s)	12, 22, 198, 286, 303, 363, 447, 714, 902
SfaNI	GCATC	3 cut(s)	508, 857, 943
SfcI	CTRYAG	1 cut(s)	717
Sse9I	AATT	4 cut(s)	238, 272, 372, 670
SspMI	CTAG	3 cut(s)	329, 462, 807
StyD4I	CCNGG	1 cut(s)	745
StyI	CCWWGG	1 cut(s)	806
TaaI	ACNGT	4 cut(s)	52, 62, 429, 582
TaqI	TCGA	1 cut(s)	861
TasI	AATT	4 cut(s)	238, 272, 372, 670
TfiI	GAWTC	1 cut(s)	14
Tru1I	TTAA	2 cut(s)	57, 453
Tru9I	TTAA	2 cut(s)	57, 453
TscAI	CASTG	4 cut(s)	345, 622, 643, 726
TseFI	GTSAC	1 cut(s)	895
TseI	GCWGC	8 cut(s)	29, 394, 488, 543, 570, 633, 828, 840
Tsp45I	GTSAC	1 cut(s)	895
TspDTI	ATGAA	3 cut(s)	487, 750, 939
TspRI	CASTG	4 cut(s)	345, 622, 643, 726
XceI	RCATGY	1 cut(s)	860
XmaJI	CCTAGG	1 cut(s)	806
XspI	CTAG	3 cut(s)	329, 462, 807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.