Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0011183

Physical Location & Seq

Genomic Coordinates Reverse (-)

74374618 .. 74375064

Gene Structure 447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0629000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGAGGCAATTTTTTATTCTCACCATGCGGTGCAAGGACCGCAGCTCAACCTCAGAGGCTCTTGGAAGGAGGACAAGCTTCCCATCCGATTGAAGTTCTACAAGTCAAGCAAATGGCGGCATCGTGTGAGAAGCGATCCAGTTGTTTTTGAAAGGTGTACTAAACTAGCGGAAAGAGATATTTGGGTAAAGTTTTCTCATTTCAAGCAGCACTTATCCAACAACTACGACAGTAACAGGGAGTATGGAGCGCTCATCACCGGGTATCTGTCGAGCATGGGTGTGCCGCAAGATGAACATCCTGCTATTGTTCACAAGCTATTCCGGGTGGTTGAGGCGGCCGTCAACCCCGAAATCCCTGTTATAGTGTGTGTGTTTCACAACACTCACCGCGTCGTCGGTGGTGATGGACATGGACATGGACATGAACCATGTATGCCCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_zn_clust WRKY

Protein Analysis

148

Amino Acids

17.06

Weight (kDa)

9.05

Isoelectric Point (pI)

39.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04670 AT3G04670 AT5G28650
fragaria_vesca	FvH4_6g02660 FvH4_6g02660
malus_domestica	MD04G1226400.v1.1 MD12G1243400.v1.1
prunus_persica	Prupe.6G345100_v2.0.a1
pyrus_communis	pycom04g19960 pycom12g22250
rosa_chinensis	RchiOBHm_Chr3g0450591
rosa_laevigata	RLG00000025718
rosa_multiflora	Rmu_sc0000078.1_g000042
rosa_roxburghii	Rroxscaffold_6G00428290
rosa_rugosa	Rorug02G0629000
rosa_samantha	Rh3AG029700 Rh3BG030100 Rh3CG029000 Rh3DG029800
rosa_wichuraiana	Rw3G002290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	393
AciI	CCGC	7 cut(s)	29, 41, 118, 170, 287, 338, 391
AclWI	GGATC	1 cut(s)	131
AcoI	YGGCCR	1 cut(s)	339
AfaI	GTAC	1 cut(s)	160
AfeI	AGCGCT	1 cut(s)	252
AgsI	TTSAA	3 cut(s)	94, 152, 205
AluBI	AGCT	3 cut(s)	46, 79, 319
AluI	AGCT	3 cut(s)	46, 79, 319
AlwI	GGATC	1 cut(s)	131
Aor51HI	AGCGCT	1 cut(s)	252
AoxI	GGCC	1 cut(s)	339
ApeKI	GCWGC	2 cut(s)	43, 208
AspLEI	GCGC	1 cut(s)	253
AspS9I	GGNCC	1 cut(s)	38
AsuC2I	CCSGG	2 cut(s)	262, 326
AsuHPI	GGTGA	4 cut(s)	14, 250, 380, 416
AvaII	GGWCC	1 cut(s)	38
BbvI	GCAGC	2 cut(s)	55, 220
BccI	CCATC	2 cut(s)	92, 401
BceAI	ACGGC	1 cut(s)	326
BcnI	CCSGG	2 cut(s)	262, 326
BfaI	CTAG	1 cut(s)	167
BfoI	RGCGCY	1 cut(s)	254
BisI	GCNGC	5 cut(s)	44, 119, 209, 287, 339
BlsI	GCNGC	5 cut(s)	45, 120, 210, 288, 340
Bme1390I	CCNGG	2 cut(s)	262, 326
Bme18I	GGWCC	1 cut(s)	38
BmgT120I	GGNCC	1 cut(s)	38
BmrFI	CCNGG	2 cut(s)	262, 326
BmsI	GCATC	1 cut(s)	130
BpuMI	CCSGG	2 cut(s)	262, 326
BsaBI	GATNNNNATC	1 cut(s)	297
Bse1I	ACTGG	1 cut(s)	140
Bse8I	GATNNNNATC	1 cut(s)	297
BseGI	GGATG	2 cut(s)	84, 298
BseJI	GATNNNNATC	1 cut(s)	297
BseMII	CTCAG	1 cut(s)	67
BseNI	ACTGG	1 cut(s)	140
BseX3I	CGGCCG	1 cut(s)	339
BseXI	GCAGC	2 cut(s)	55, 220
Bsh1236I	CGCG	1 cut(s)	393
Bsh1285I	CGRYCG	1 cut(s)	342
BshFI	GGCC	1 cut(s)	341
BsiEI	CGRYCG	1 cut(s)	342
BsiSI	CCGG	2 cut(s)	261, 325
BsnI	GGCC	1 cut(s)	341
Bsp143I	GATC	1 cut(s)	136
BspACI	CCGC	7 cut(s)	29, 41, 118, 170, 287, 338, 391
BspANI	GGCC	1 cut(s)	341
BspCNI	CTCAG	1 cut(s)	66
BspFNI	CGCG	1 cut(s)	393
BspPI	GGATC	1 cut(s)	131
BsrI	ACTGG	1 cut(s)	140
BssMI	GATC	1 cut(s)	136
Bst4CI	ACNGT	1 cut(s)	233
BstDEI	CTNAG	1 cut(s)	53
BstF5I	GGATG	2 cut(s)	84, 298
BstFNI	CGCG	1 cut(s)	393
BstH2I	RGCGCY	1 cut(s)	254
BstHHI	GCGC	1 cut(s)	253
BstKTI	GATC	1 cut(s)	139
BstMBI	GATC	1 cut(s)	136
BstMCI	CGRYCG	1 cut(s)	342
BstMWI	GCNNNNNNNGC	1 cut(s)	40
BstSCI	CCNGG	2 cut(s)	260, 324
BstUI	CGCG	1 cut(s)	393
BstV1I	GCAGC	2 cut(s)	55, 220
BstZI	CGGCCG	1 cut(s)	339
BsuRI	GGCC	1 cut(s)	341
BtsCI	GGATG	2 cut(s)	84, 298
CfoI	GCGC	1 cut(s)	253
Cfr13I	GGNCC	1 cut(s)	38
CseI	GACGC	1 cut(s)	382
Csp6I	GTAC	1 cut(s)	159
CviAII	CATG	6 cut(s)	26, 277, 413, 419, 425, 432
CviJI	RGCY	5 cut(s)	46, 60, 79, 319, 341
CviKI_1	RGCY	5 cut(s)	46, 60, 79, 319, 341
CviQI	GTAC	1 cut(s)	159
DdeI	CTNAG	1 cut(s)	53
DpnI	GATC	1 cut(s)	138
DpnII	GATC	1 cut(s)	136
EaeI	YGGCCR	1 cut(s)	339
EagI	CGGCCG	1 cut(s)	339
EclXI	CGGCCG	1 cut(s)	339
Eco47I	GGWCC	1 cut(s)	38
Eco47III	AGCGCT	1 cut(s)	252
Eco52I	CGGCCG	1 cut(s)	339
FaeI	CATG	6 cut(s)	29, 280, 416, 422, 428, 435
FaiI	YATR	9 cut(s)	27, 246, 278, 365, 414, 420, 426, 433, 437
FalI	AAGNNNNNCTT	2 cut(s)	197, 229
FatI	CATG	6 cut(s)	25, 276, 412, 418, 424, 431
Fnu4HI	GCNGC	5 cut(s)	44, 119, 209, 287, 339
FokI	GGATG	2 cut(s)	71, 285
Fsp4HI	GCNGC	5 cut(s)	44, 119, 209, 287, 339
FspBI	CTAG	1 cut(s)	167
GlaI	GCGC	1 cut(s)	252
GluI	GCNGC	5 cut(s)	44, 119, 209, 287, 339
HaeII	RGCGCY	1 cut(s)	254
HaeIII	GGCC	1 cut(s)	341
HapII	CCGG	2 cut(s)	261, 325
HgaI	GACGC	1 cut(s)	382
HhaI	GCGC	1 cut(s)	253
Hin1II	CATG	6 cut(s)	29, 280, 416, 422, 428, 435
Hin6I	GCGC	1 cut(s)	251
HinP1I	GCGC	1 cut(s)	251
HincII	GTYRAC	1 cut(s)	346
HindII	GTYRAC	1 cut(s)	346
HindIII	AAGCTT	1 cut(s)	77
HpaII	CCGG	2 cut(s)	261, 325
HphI	GGTGA	4 cut(s)	14, 250, 380, 416
Hpy166II	GTNNAC	3 cut(s)	159, 313, 346
Hpy188I	TCNGA	2 cut(s)	56, 89
Hpy8I	GTNNAC	3 cut(s)	159, 313, 346
Hpy99I	CGWCG	2 cut(s)	398, 401
HpyAV	CCTTC	1 cut(s)	61
HpyCH4III	ACNGT	1 cut(s)	233
HpyCH4V	TGCA	1 cut(s)	34
HpyF10VI	GCNNNNNNNGC	1 cut(s)	40
HpyF3I	CTNAG	1 cut(s)	53
Hsp92II	CATG	6 cut(s)	29, 280, 416, 422, 428, 435
HspAI	GCGC	1 cut(s)	251
Kzo9I	GATC	1 cut(s)	136
LmnI	GCTCC	1 cut(s)	248
LpnPI	CCDG	6 cut(s)	153, 223, 274, 315, 338, 372
Lsp1109I	GCAGC	2 cut(s)	55, 220
LweI	GCATC	1 cut(s)	130
MaeI	CTAG	1 cut(s)	167
MaeIII	GTNAC	1 cut(s)	233
MalI	GATC	1 cut(s)	138
MboI	GATC	1 cut(s)	136
MluCI	AATT	2 cut(s)	9, 442
MmeI	TCCRAC	1 cut(s)	243
MnlI	CCTC	4 cut(s)	50, 62, 64, 328
MslI	CAYNNNNRTG	3 cut(s)	281, 417, 423
MspI	CCGG	2 cut(s)	261, 325
MspR9I	CCNGG	2 cut(s)	262, 326
MvnI	CGCG	1 cut(s)	393
MwoI	GCNNNNNNNGC	1 cut(s)	40
NciI	CCSGG	2 cut(s)	262, 326
NdeII	GATC	1 cut(s)	136
NlaIII	CATG	6 cut(s)	29, 280, 416, 422, 428, 435
PkrI	GCNGC	5 cut(s)	45, 120, 210, 288, 340
PspPI	GGNCC	1 cut(s)	38
RsaI	GTAC	1 cut(s)	160
RsaNI	GTAC	1 cut(s)	159
RseI	CAYNNNNRTG	3 cut(s)	281, 417, 423
SatI	GCNGC	5 cut(s)	44, 119, 209, 287, 339
Sau3AI	GATC	1 cut(s)	136
Sau96I	GGNCC	1 cut(s)	38
ScrFI	CCNGG	2 cut(s)	262, 326
SetI	ASST	5 cut(s)	48, 54, 81, 158, 321
SfaNI	GCATC	1 cut(s)	130
SinI	GGWCC	1 cut(s)	38
SmiMI	CAYNNNNRTG	3 cut(s)	281, 417, 423
Sse9I	AATT	2 cut(s)	9, 442
SsiI	CCGC	7 cut(s)	29, 41, 118, 170, 287, 338, 391
SspMI	CTAG	1 cut(s)	167
StyD4I	CCNGG	2 cut(s)	260, 324
TaaI	ACNGT	1 cut(s)	233
TaqI	TCGA	1 cut(s)	272
TasI	AATT	2 cut(s)	9, 442
TatI	WGTACW	1 cut(s)	158
TauI	GCSGC	3 cut(s)	121, 289, 341
TseI	GCWGC	2 cut(s)	43, 208
TspDTI	ATGAA	2 cut(s)	309, 441
VpaK11BI	GGWCC	1 cut(s)	38
XspI	CTAG	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.