Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011183

Physical Location & Seq

Genomic Coordinates Reverse (-)

10677599 .. 10679204

Gene Structure 1606 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G28650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGAAGAAGTTGAAGCTGCAAACAAAGCAGCAGTGGAAAGTTGTCATGGAGTATTGAATCTCTTATCACAACAAACCAATGATTCCAAATCAATAATGGTTGAAACAAGAGAAGCTGTTTGCAAGTTCAAGAGAGTCTCCTCTCTTTTGTCTAGAGGGTTAGGTCAAAGGAAGATAAAGAAACTCAACAACAACAACTACAAGTTTAGCTCTTCTTTGTTGCCACAACACATGTTTTTGGAGAGTCCTGTTTGCAGTAATAATGCTATAAGTGGTTGTATTCCAATTCTAGCACCAAAGCCTCTTCAGATTGTACCAGCTGGTCCTCCTCCATTGATGTTGTTTAACCAGAATATGTGTCTTGATAAGTCGTTTCTCGAGCTGAAGCCACCCTCTTCACGAGCTGTTGATCCAAAACCTTATCAGTTTATTCATACCCATCAGCAAGGAGTGTACTCAAGGAGCAAAAGTGGTTTGAATCTAAAGTTTGATGGGTCTATTGGTGCTAGTTGTTATTCACCAAGTATATCAAATGGGTCAAGATCGTTTGTTTCATCTCTTAGTATGGATGGTAGTGTGACGGATTACGATAGAAACTCTTTTCATTTGATTGGATTACCTCAAGGTTCCGATCATATATCGCAACATTCTAGGAGGACTAGTTGCTCTGGTAGTTTAAAATGTGGAAGTAAAAGCAAATGCCATTGTTCCAAGAAAAGGAAATTAAGGGTGAAACGATCGATTAAAGTACCGGCAATCAGTAACAAGATTGCGGACATACCTCCCGATGAATATTCATGGAGGAAATACGGACAAAAGCCGATTAAGGGTTCTCCTCATCCTAGGGGATACTATAAATGTAGCAGTGTGCGCGGTTGTCCAGCGAGGAAGCATGTTGAGCGATGTGTAGAAGAAACTTCGATGCTTATTGTGACTTATGAAGGCGAGCATAACCATTCAAGAATACTCTCTTCTCAATCAGCTCATACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044237 GO:0044281 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_zn_clust WRKY

Protein Analysis

330

Amino Acids

36.49

Weight (kDa)

9.63

Isoelectric Point (pI)

50.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plant_zn_clust	PF10533	219 - 259	1.7e-15	Plant zinc cluster domain
WRKY	PF03106	263 - 319	2.3e-26	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04670 AT3G04670 AT5G28650
fragaria_vesca	FvH4_6g02660 FvH4_6g02660
malus_domestica	MD04G1226400.v1.1 MD12G1243400.v1.1
prunus_persica	Prupe.6G345100_v2.0.a1
pyrus_communis	pycom04g19960 pycom12g22250
rosa_chinensis	RchiOBHm_Chr3g0450591
rosa_laevigata	RLG00000025718
rosa_multiflora	Rmu_sc0000078.1_g000042
rosa_roxburghii	Rroxscaffold_6G00428290
rosa_rugosa	Rorug02G0629000
rosa_samantha	Rh3AG029700 Rh3BG030100 Rh3CG029000 Rh3DG029800
rosa_wichuraiana	Rw3G002290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	873
AciI	CCGC	2 cut(s)	773, 873
AclWI	GGATC	1 cut(s)	404
AcuI	CTGAAG	2 cut(s)	290, 404
AfaI	GTAC	3 cut(s)	315, 455, 750
AfiI	CCNNNNNNNGG	2 cut(s)	717, 827
AflIII	ACRYGT	1 cut(s)	231
AgsI	TTSAA	6 cut(s)	14, 58, 104, 130, 478, 960
AhlI	ACTAGT	1 cut(s)	659
AluBI	AGCT	7 cut(s)	17, 116, 210, 320, 382, 404, 983
AluI	AGCT	7 cut(s)	17, 116, 210, 320, 382, 404, 983
Alw26I	GTCTC	1 cut(s)	142
AlwI	GGATC	1 cut(s)	404
Ama87I	CYCGRG	1 cut(s)	377
ApeKI	GCWGC	2 cut(s)	17, 29
AspA2I	CCTAGG	1 cut(s)	842
AspLEI	GCGC	1 cut(s)	873
AspS9I	GGNCC	1 cut(s)	323
AsuHPI	GGTGA	2 cut(s)	510, 742
AvaI	CYCGRG	1 cut(s)	377
AvaII	GGWCC	1 cut(s)	323
AvrII	CCTAGG	1 cut(s)	842
BauI	CACGAG	1 cut(s)	399
BbvI	GCAGC	2 cut(s)	4, 41
BccI	CCATC	3 cut(s)	447, 485, 563
BciVI	GTATCC	1 cut(s)	842
BcoDI	GTCTC	1 cut(s)	142
BcuI	ACTAGT	1 cut(s)	659
BfaI	CTAG	6 cut(s)	153, 290, 507, 651, 660, 843
BfuI	GTATCC	1 cut(s)	842
BisI	GCNGC	2 cut(s)	18, 30
BlnI	CCTAGG	1 cut(s)	842
BlsI	GCNGC	2 cut(s)	19, 31
Bme18I	GGWCC	1 cut(s)	323
BmeT110I	CYCGRG	1 cut(s)	377
BmgT120I	GGNCC	1 cut(s)	323
BmiI	GGNNCC	1 cut(s)	628
BmsI	GCATC	1 cut(s)	912
BpuEI	CTTGAG	2 cut(s)	442, 606
Bsa29I	ATCGAT	1 cut(s)	740
BsaJI	CCNNGG	1 cut(s)	842
BsaXI	ACNNNNNCTCC	4 cut(s)	454, 484, 646, 676
Bsc4I	CCNNNNNNNGG	2 cut(s)	717, 827
Bse118I	RCCGGY	1 cut(s)	751
BseCI	ATCGAT	1 cut(s)	740
BseDI	CCNNGG	1 cut(s)	842
BseGI	GGATG	2 cut(s)	574, 838
BseLI	CCNNNNNNNGG	2 cut(s)	717, 827
BseRI	GAGGAG	3 cut(s)	130, 318, 825
BseXI	GCAGC	2 cut(s)	4, 41
Bsh1236I	CGCG	1 cut(s)	873
Bsh1285I	CGRYCG	1 cut(s)	740
BshVI	ATCGAT	1 cut(s)	740
BsiEI	CGRYCG	1 cut(s)	740
BsiHKCI	CYCGRG	1 cut(s)	377
BsiSI	CCGG	1 cut(s)	752
BslI	CCNNNNNNNGG	2 cut(s)	717, 827
BsmAI	GTCTC	1 cut(s)	142
BsoBI	CYCGRG	1 cut(s)	377
Bsp143I	GATC	4 cut(s)	409, 542, 631, 737
BspACI	CCGC	2 cut(s)	773, 873
BspDI	ATCGAT	1 cut(s)	740
BspFNI	CGCG	1 cut(s)	873
BspLI	GGNNCC	1 cut(s)	628
BspPI	GGATC	1 cut(s)	404
BspQI	GCTCTTC	1 cut(s)	217
BsrFI	RCCGGY	1 cut(s)	751
BssAI	RCCGGY	1 cut(s)	751
BssECI	CCNNGG	1 cut(s)	842
BssMI	GATC	4 cut(s)	409, 542, 631, 737
BssSI	CACGAG	1 cut(s)	399
BssT1I	CCWWGG	1 cut(s)	842
Bst2BI	CACGAG	1 cut(s)	399
Bst6I	CTCTTC	4 cut(s)	217, 309, 400, 976
BstC8I	GCNNGC	1 cut(s)	947
BstDEI	CTNAG	1 cut(s)	560
BstF5I	GGATG	2 cut(s)	574, 838
BstFNI	CGCG	1 cut(s)	873
BstHHI	GCGC	1 cut(s)	873
BstKTI	GATC	4 cut(s)	412, 545, 634, 740
BstMAI	GTCTC	1 cut(s)	142
BstMBI	GATC	4 cut(s)	409, 542, 631, 737
BstMCI	CGRYCG	1 cut(s)	740
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 870, 898
BstNSI	RCATGY	2 cut(s)	235, 896
BstUI	CGCG	1 cut(s)	873
BstV1I	GCAGC	2 cut(s)	4, 41
Bsu15I	ATCGAT	1 cut(s)	740
BsuI	GTATCC	1 cut(s)	842
BsuTUI	ATCGAT	1 cut(s)	740
BtgZI	GCGATG	1 cut(s)	916
BtsCI	GGATG	2 cut(s)	574, 838
BtsI	GCAGTG	2 cut(s)	39, 871
BtsIMutI	CAGTG	2 cut(s)	39, 871
Cac8I	GCNNGC	1 cut(s)	947
CfoI	GCGC	1 cut(s)	873
Cfr10I	RCCGGY	1 cut(s)	751
Cfr13I	GGNCC	1 cut(s)	323
ClaI	ATCGAT	1 cut(s)	740
Csp6I	GTAC	3 cut(s)	314, 454, 749
CviAII	CATG	4 cut(s)	47, 232, 798, 893
CviQI	GTAC	3 cut(s)	314, 454, 749
DdeI	CTNAG	1 cut(s)	560
DpnI	GATC	4 cut(s)	411, 544, 633, 739
DpnII	GATC	4 cut(s)	409, 542, 631, 737
DraI	TTTAAA	1 cut(s)	678
Eam1104I	CTCTTC	4 cut(s)	217, 309, 400, 976
EarI	CTCTTC	4 cut(s)	217, 309, 400, 976
Eco130I	CCWWGG	1 cut(s)	842
Eco47I	GGWCC	1 cut(s)	323
Eco57I	CTGAAG	2 cut(s)	290, 404
Eco88I	CYCGRG	1 cut(s)	377
EcoT14I	CCWWGG	1 cut(s)	842
ErhI	CCWWGG	1 cut(s)	842
FaeI	CATG	4 cut(s)	50, 235, 801, 896
FatI	CATG	4 cut(s)	46, 231, 797, 892
Fnu4HI	GCNGC	2 cut(s)	18, 30
FokI	GGATG	2 cut(s)	581, 825
Fsp4HI	GCNGC	2 cut(s)	18, 30
FspBI	CTAG	6 cut(s)	153, 290, 507, 651, 660, 843
GlaI	GCGC	1 cut(s)	872
GluI	GCNGC	2 cut(s)	18, 30
HapII	CCGG	1 cut(s)	752
HhaI	GCGC	1 cut(s)	873
Hin1II	CATG	4 cut(s)	50, 235, 801, 896
Hin6I	GCGC	1 cut(s)	871
HinP1I	GCGC	1 cut(s)	871
HinfI	GANTC	5 cut(s)	58, 83, 135, 244, 478
HpaII	CCGG	1 cut(s)	752
HphI	GGTGA	2 cut(s)	510, 742
Hpy166II	GTNNAC	1 cut(s)	454
Hpy188I	TCNGA	2 cut(s)	309, 631
Hpy188III	TCNNGA	8 cut(s)	130, 153, 362, 377, 399, 540, 785, 960
Hpy8I	GTNNAC	1 cut(s)	454
HpyAV	CCTTC	1 cut(s)	935
HpyCH4V	TGCA	3 cut(s)	20, 123, 255
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 870, 898
HpyF3I	CTNAG	1 cut(s)	560
Hsp92II	CATG	4 cut(s)	50, 235, 801, 896
HspAI	GCGC	1 cut(s)	871
Kzo9I	GATC	4 cut(s)	409, 542, 631, 737
LguI	GCTCTTC	1 cut(s)	217
LmnI	GCTCC	1 cut(s)	462
LpnPI	CCDG	7 cut(s)	261, 306, 330, 362, 654, 765, 894
Lsp1109I	GCAGC	2 cut(s)	4, 41
LweI	GCATC	1 cut(s)	912
MaeI	CTAG	6 cut(s)	153, 290, 507, 651, 660, 843
MaeIII	GTNAC	3 cut(s)	577, 761, 931
MalI	GATC	4 cut(s)	411, 544, 633, 739
MboI	GATC	4 cut(s)	409, 542, 631, 737
MboII	GAAGA	7 cut(s)	17, 184, 204, 296, 387, 923, 963
MluCI	AATT	2 cut(s)	285, 722
MlyI	GAGTC	2 cut(s)	144, 253
MseI	TTAA	5 cut(s)	345, 677, 725, 744, 825
MspA1I	CMGCKG	1 cut(s)	320
MspI	CCGG	1 cut(s)	752
MvnI	CGCG	1 cut(s)	873
MwoI	GCNNNNNNNGC	3 cut(s)	26, 870, 898
NdeII	GATC	4 cut(s)	409, 542, 631, 737
NlaIII	CATG	4 cut(s)	50, 235, 801, 896
NlaIV	GGNNCC	1 cut(s)	628
NmuCI	GTSAC	2 cut(s)	577, 931
NspI	RCATGY	2 cut(s)	235, 896
PaeR7I	CTCGAG	1 cut(s)	377
PciI	ACATGT	1 cut(s)	231
PciSI	GCTCTTC	1 cut(s)	217
PfeI	GAWTC	3 cut(s)	58, 83, 478
PkrI	GCNGC	2 cut(s)	19, 31
Ple19I	CGATCG	1 cut(s)	740
PleI	GAGTC	2 cut(s)	143, 252
PpsI	GAGTC	2 cut(s)	143, 252
PscI	ACATGT	1 cut(s)	231
PspN4I	GGNNCC	1 cut(s)	628
PspPI	GGNCC	1 cut(s)	323
PvuI	CGATCG	1 cut(s)	740
PvuII	CAGCTG	1 cut(s)	320
RsaI	GTAC	3 cut(s)	315, 455, 750
RsaNI	GTAC	3 cut(s)	314, 454, 749
SapI	GCTCTTC	1 cut(s)	217
SaqAI	TTAA	5 cut(s)	345, 677, 725, 744, 825
SatI	GCNGC	2 cut(s)	18, 30
Sau3AI	GATC	4 cut(s)	409, 542, 631, 737
Sau96I	GGNCC	1 cut(s)	323
SchI	GAGTC	2 cut(s)	144, 253
SfaNI	GCATC	1 cut(s)	912
Sfr274I	CTCGAG	1 cut(s)	377
SinI	GGWCC	1 cut(s)	323
SlaI	CTCGAG	1 cut(s)	377
SmlI	CTYRAG	3 cut(s)	377, 457, 621
SmoI	CTYRAG	3 cut(s)	377, 457, 621
SpeI	ACTAGT	1 cut(s)	659
Sse9I	AATT	2 cut(s)	285, 722
SsiI	CCGC	2 cut(s)	773, 873
SspI	AATATT	1 cut(s)	794
SspMI	CTAG	6 cut(s)	153, 290, 507, 651, 660, 843
StyI	CCWWGG	1 cut(s)	842
TaqI	TCGA	3 cut(s)	378, 740, 920
TasI	AATT	2 cut(s)	285, 722
TatI	WGTACW	1 cut(s)	453
TfiI	GAWTC	3 cut(s)	58, 83, 478
Tru1I	TTAA	5 cut(s)	345, 677, 725, 744, 825
Tru9I	TTAA	5 cut(s)	345, 677, 725, 744, 825
TscAI	CASTG	2 cut(s)	39, 871
TseFI	GTSAC	2 cut(s)	577, 931
TseI	GCWGC	2 cut(s)	17, 29
Tsp45I	GTSAC	2 cut(s)	577, 931
TspDTI	ATGAA	6 cut(s)	422, 543, 593, 786, 804, 954
TspGWI	ACGGA	2 cut(s)	596, 825
TspRI	CASTG	2 cut(s)	39, 871
VpaK11BI	GGWCC	1 cut(s)	323
XbaI	TCTAGA	1 cut(s)	152
XceI	RCATGY	2 cut(s)	235, 896
XcmI	CCANNNNNNNNNTGG	1 cut(s)	94
XhoI	CTCGAG	1 cut(s)	377
XmaJI	CCTAGG	1 cut(s)	842
XspI	CTAG	6 cut(s)	153, 290, 507, 651, 660, 843

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.