Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0011183

Physical Location & Seq

Genomic Coordinates Reverse (-)

1994610 .. 1995926

Gene Structure 1317 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG029800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGAGGAGGTTGAATCAGCTAACAAAGCAGCAGTAGAGAGTTGCCATACAGTTCTTAACAGTCTCTTGTGCAAACCCAAAAATGATATTCAGTCTAAAAGTTTAGGGGTGCAGACTGAGGAGGCTGTGGTGAAGTTCAAGAGAGTTGTGTCTCTTCTGAGTCATGGAAGAAGGATCAGAAAGTTGAAGAAGAAGCTCGACTCATCTTTGCCTCAAAGCCTCTTCTTGGATGGCCCTAATTACAGATCAGACATTTCAAGCAAAACCCTCCAATTACTCCCAGCTACTTTTCCTCAAAACCTACACACACAAAACCAGAAAGTGTTTCTAGGAAACCCAGTGTTGGATATGAGTATCAAGCTTCCTCTCCAAATTGCCAAACCAAAACCATTGCAGCAGTTACATAGACTTCAAGTCCATCCCCAACAGTTCACCGGCATAAACCTTGCATTTAACAAGCCTAGCACCACACCCTCCTTGTCAAACGCAGCGTCGTTCATATCATGTTTGAGCATGGATGCTGGTGGTGTGGCTAACTATGGCAGCAACTCCTTCAGACTAATCAATGGCAGCGTGCCACAGTCGTCTGATCAGATCTCGCAACAACAAAGGAGGAGCAGTGGTGCAGAGCAAAGCAGCAGTGTAAAATGTGGCAGTAATGATAAGTGTCCTAATTCAAGGAAGAGGAGACTGAGGGTGAGAAGATCTTTCAAGGTTCCTGCAGTGAGTCAGAATGTTGCAAACATTCCTGGTGATGAGTATTCATGGAGGAAATATGGGCAGAAGCCAATCAAGGGCTCTCCTTATCCTAGGGGATATTATAAATGTAGCAGCATGAGAGGCTGCCCAGCAAGGAAACATGTCGAGCGATGCGTGGAAGACCCCTCAATGCTGATAGTCACCTATGAGGGCGAGCACAAGCATTCGCAATCTGCCCATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_zn_clust WRKY

Protein Analysis

314

Amino Acids

34.91

Weight (kDa)

9.93

Isoelectric Point (pI)

60.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plant_zn_clust	PF10533	209 - 247	1e-07	Plant zinc cluster domain
WRKY	PF03106	252 - 308	4.6e-27	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04670 AT3G04670 AT5G28650
fragaria_vesca	FvH4_6g02660 FvH4_6g02660
malus_domestica	MD04G1226400.v1.1 MD12G1243400.v1.1
prunus_persica	Prupe.6G345100_v2.0.a1
pyrus_communis	pycom04g19960 pycom12g22250
rosa_chinensis	RchiOBHm_Chr3g0450591
rosa_laevigata	RLG00000025718
rosa_multiflora	Rmu_sc0000078.1_g000042
rosa_roxburghii	Rroxscaffold_6G00428290
rosa_rugosa	Rorug02G0629000
rosa_samantha	Rh3AG029700 Rh3BG030100 Rh3CG029000 Rh3DG029800
rosa_wichuraiana	Rw3G002290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	822
AclWI	GGATC	1 cut(s)	182
AcuI	CTGAAG	1 cut(s)	538
AfiI	CCNNNNNNNGG	3 cut(s)	226, 343, 794
AflIII	ACRYGT	1 cut(s)	859
AgsI	TTSAA	7 cut(s)	14, 139, 187, 258, 413, 678, 712
AhdI	GACNNNNNGTC	1 cut(s)	413
AjnI	CCWGG	1 cut(s)	748
AluBI	AGCT	4 cut(s)	20, 196, 284, 361
AluI	AGCT	4 cut(s)	20, 196, 284, 361
Alw21I	GWGCWC	1 cut(s)	918
Alw26I	GTCTC	3 cut(s)	68, 156, 682
AlwI	GGATC	1 cut(s)	182
AoxI	GGCC	1 cut(s)	232
ApeKI	GCWGC	8 cut(s)	29, 394, 488, 543, 570, 636, 831, 843
ArsI	GACNNNNNNTTYG	2 cut(s)	476, 508
AspA2I	CCTAGG	1 cut(s)	809
AspS9I	GGNCC	1 cut(s)	233
AsuHPI	GGTGA	5 cut(s)	142, 424, 709, 764, 892
AvrII	CCTAGG	1 cut(s)	809
BanII	GRGCYC	1 cut(s)	800
BbsI	GAAGAC	1 cut(s)	885
Bbv12I	GWGCWC	1 cut(s)	918
BbvI	GCAGC	8 cut(s)	41, 406, 500, 555, 582, 648, 830, 843
BccI	CCATC	2 cut(s)	224, 426
BciT130I	CCWGG	1 cut(s)	750
BclI	TGATCA	1 cut(s)	589
BcoDI	GTCTC	3 cut(s)	68, 156, 682
BfaI	CTAG	3 cut(s)	329, 462, 810
BfmI	CTRYAG	1 cut(s)	720
BglII	AGATCT	2 cut(s)	594, 704
BisI	GCNGC	8 cut(s)	30, 395, 489, 544, 571, 637, 832, 844
BlnI	CCTAGG	1 cut(s)	809
BlsI	GCNGC	8 cut(s)	31, 396, 490, 545, 572, 638, 833, 845
Bme1390I	CCNGG	1 cut(s)	750
BmeRI	GACNNNNNGTC	1 cut(s)	413
BmgT120I	GGNCC	1 cut(s)	233
BmiI	GGNNCC	1 cut(s)	717
BmrFI	CCNGG	1 cut(s)	750
BmrI	ACTGGG	1 cut(s)	332
BmsI	GCATC	2 cut(s)	508, 860
BmuI	ACTGGG	1 cut(s)	332
BpiI	GAAGAC	1 cut(s)	885
BsaJI	CCNNGG	1 cut(s)	809
BsaXI	ACNNNNNCTCC	4 cut(s)	604, 607, 634, 637
Bsc4I	CCNNNNNNNGG	3 cut(s)	226, 343, 794
Bse118I	RCCGGY	1 cut(s)	434
Bse1I	ACTGG	1 cut(s)	338
Bse3DI	GCAATG	1 cut(s)	389
BseBI	CCWGG	1 cut(s)	750
BseDI	CCNNGG	1 cut(s)	809
BseGI	GGATG	3 cut(s)	235, 418, 523
BseLI	CCNNNNNNNGG	3 cut(s)	226, 343, 794
BseMI	GCAATG	1 cut(s)	389
BseMII	CTCAG	3 cut(s)	108, 149, 683
BseNI	ACTGG	1 cut(s)	338
BseRI	GAGGAG	4 cut(s)	20, 134, 628, 700
BseXI	GCAGC	8 cut(s)	41, 406, 500, 555, 582, 648, 830, 843
BseYI	CCCAGC	2 cut(s)	280, 847
BsgI	GTGCAG	2 cut(s)	131, 645
BshFI	GGCC	1 cut(s)	234
BsiHKAI	GWGCWC	1 cut(s)	918
BsiSI	CCGG	1 cut(s)	435
BslI	CCNNNNNNNGG	3 cut(s)	226, 343, 794
BsmAI	GTCTC	3 cut(s)	68, 156, 682
BsmI	GAATGC	1 cut(s)	922
BsnI	GGCC	1 cut(s)	234
Bsp1286I	GDGCHC	2 cut(s)	800, 918
Bsp143I	GATC	5 cut(s)	174, 245, 589, 594, 704
BspANI	GGCC	1 cut(s)	234
BspCNI	CTCAG	3 cut(s)	109, 150, 684
BspLI	GGNNCC	1 cut(s)	717
BspMAI	CTGCAG	1 cut(s)	724
BspPI	GGATC	1 cut(s)	182
BsrDI	GCAATG	1 cut(s)	389
BsrFI	RCCGGY	1 cut(s)	434
BsrI	ACTGG	1 cut(s)	338
BssAI	RCCGGY	1 cut(s)	434
BssECI	CCNNGG	1 cut(s)	809
BssMI	GATC	5 cut(s)	174, 245, 589, 594, 704
BssT1I	CCWWGG	1 cut(s)	809
Bst2UI	CCWGG	1 cut(s)	750
Bst4CI	ACNGT	4 cut(s)	52, 62, 429, 582
Bst6I	CTCTTC	3 cut(s)	159, 227, 677
BstC8I	GCNNGC	2 cut(s)	575, 914
BstDEI	CTNAG	3 cut(s)	117, 158, 692
BstF5I	GGATG	3 cut(s)	235, 418, 523
BstKTI	GATC	5 cut(s)	177, 248, 592, 597, 707
BstMAI	GTCTC	3 cut(s)	68, 156, 682
BstMBI	GATC	5 cut(s)	174, 245, 589, 594, 704
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 840
BstNI	CCWGG	1 cut(s)	750
BstNSI	RCATGY	1 cut(s)	863
BstSCI	CCNGG	1 cut(s)	748
BstSFI	CTRYAG	1 cut(s)	720
BstV1I	GCAGC	8 cut(s)	41, 406, 500, 555, 582, 648, 830, 843
BstV2I	GAAGAC	1 cut(s)	885
BstX2I	RGATCY	2 cut(s)	594, 704
BstYI	RGATCY	2 cut(s)	594, 704
BsuRI	GGCC	1 cut(s)	234
BtgZI	GCGATG	1 cut(s)	883
BtsCI	GGATG	3 cut(s)	235, 418, 523
BtsI	GCAGTG	3 cut(s)	625, 646, 729
BtsIMutI	CAGTG	4 cut(s)	345, 625, 646, 729
Cac8I	GCNNGC	2 cut(s)	575, 914
Cfr10I	RCCGGY	1 cut(s)	434
Cfr13I	GGNCC	1 cut(s)	233
CseI	GACGC	1 cut(s)	480
CviAII	CATG	6 cut(s)	164, 504, 514, 765, 835, 860
DdeI	CTNAG	3 cut(s)	117, 158, 692
DpnI	GATC	5 cut(s)	176, 247, 591, 596, 706
DpnII	GATC	5 cut(s)	174, 245, 589, 594, 704
DriI	GACNNNNNGTC	1 cut(s)	413
Eam1104I	CTCTTC	3 cut(s)	159, 227, 677
Eam1105I	GACNNNNNGTC	1 cut(s)	413
EarI	CTCTTC	3 cut(s)	159, 227, 677
Eco130I	CCWWGG	1 cut(s)	809
Eco24I	GRGCYC	1 cut(s)	800
Eco57I	CTGAAG	1 cut(s)	538
EcoRII	CCWGG	1 cut(s)	748
EcoT14I	CCWWGG	1 cut(s)	809
EcoT38I	GRGCYC	1 cut(s)	800
ErhI	CCWWGG	1 cut(s)	809
FaeI	CATG	6 cut(s)	167, 507, 517, 768, 838, 863
FatI	CATG	6 cut(s)	163, 503, 513, 764, 834, 859
FbaI	TGATCA	1 cut(s)	589
Fnu4HI	GCNGC	8 cut(s)	30, 395, 489, 544, 571, 637, 832, 844
FokI	GGATG	3 cut(s)	242, 405, 530
FriOI	GRGCYC	1 cut(s)	800
Fsp4HI	GCNGC	8 cut(s)	30, 395, 489, 544, 571, 637, 832, 844
FspBI	CTAG	3 cut(s)	329, 462, 810
GluI	GCNGC	8 cut(s)	30, 395, 489, 544, 571, 637, 832, 844
GsaI	CCCAGC	2 cut(s)	284, 851
HaeIII	GGCC	1 cut(s)	234
HapII	CCGG	1 cut(s)	435
HgaI	GACGC	1 cut(s)	480
Hin1II	CATG	6 cut(s)	167, 507, 517, 768, 838, 863
HindIII	AAGCTT	1 cut(s)	359
HinfI	GANTC	4 cut(s)	14, 160, 200, 727
HpaII	CCGG	1 cut(s)	435
HphI	GGTGA	5 cut(s)	142, 424, 709, 764, 892
Hpy166II	GTNNAC	1 cut(s)	432
Hpy188I	TCNGA	7 cut(s)	159, 179, 250, 557, 589, 594, 732
Hpy188III	TCNNGA	1 cut(s)	139
Hpy8I	GTNNAC	1 cut(s)	432
Hpy99I	CGWCG	1 cut(s)	496
HpyAV	CCTTC	2 cut(s)	165, 562
HpyCH4III	ACNGT	4 cut(s)	52, 62, 429, 582
HpyCH4V	TGCA	7 cut(s)	72, 112, 394, 449, 626, 722, 740
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 840
HpyF3I	CTNAG	3 cut(s)	117, 158, 692
Hsp92II	CATG	6 cut(s)	167, 507, 517, 768, 838, 863
Ksp22I	TGATCA	1 cut(s)	589
Kzo9I	GATC	5 cut(s)	174, 245, 589, 594, 704
LmnI	GCTCC	1 cut(s)	615
LpnPI	CCDG	9 cut(s)	294, 329, 351, 448, 507, 732, 735, 762, 861
Lsp1109I	GCAGC	8 cut(s)	41, 406, 500, 555, 582, 648, 830, 843
LweI	GCATC	2 cut(s)	508, 860
MaeI	CTAG	3 cut(s)	329, 462, 810
MaeIII	GTNAC	2 cut(s)	399, 898
MalI	GATC	5 cut(s)	176, 247, 591, 596, 706
MboI	GATC	5 cut(s)	174, 245, 589, 594, 704
MboII	GAAGA	8 cut(s)	146, 180, 199, 202, 214, 694, 714, 890
MflI	RGATCY	2 cut(s)	594, 704
MhlI	GDGCHC	2 cut(s)	800, 918
MluCI	AATT	4 cut(s)	238, 272, 372, 673
MlyI	GAGTC	3 cut(s)	169, 194, 736
MmeI	TCCRAC	1 cut(s)	324
MseI	TTAA	2 cut(s)	57, 453
MspI	CCGG	1 cut(s)	435
MspR9I	CCNGG	1 cut(s)	750
Mva1269I	GAATGC	1 cut(s)	922
MvaI	CCWGG	1 cut(s)	750
MwoI	GCNNNNNNNGC	2 cut(s)	26, 840
NdeII	GATC	5 cut(s)	174, 245, 589, 594, 704
NlaIII	CATG	6 cut(s)	167, 507, 517, 768, 838, 863
NlaIV	GGNNCC	1 cut(s)	717
NmuCI	GTSAC	1 cut(s)	898
NspI	RCATGY	1 cut(s)	863
PciI	ACATGT	1 cut(s)	859
PcsI	WCGNNNNNNNCGW	1 cut(s)	870
PctI	GAATGC	1 cut(s)	922
PfeI	GAWTC	1 cut(s)	14
PkrI	GCNGC	8 cut(s)	31, 396, 490, 545, 572, 638, 833, 845
PleI	GAGTC	3 cut(s)	168, 194, 735
PpsI	GAGTC	3 cut(s)	168, 194, 735
PscI	ACATGT	1 cut(s)	859
PsiI	TTATAA	1 cut(s)	822
Psp6I	CCWGG	1 cut(s)	748
PspFI	CCCAGC	2 cut(s)	280, 847
PspGI	CCWGG	1 cut(s)	748
PspN4I	GGNNCC	1 cut(s)	717
PspPI	GGNCC	1 cut(s)	233
PstI	CTGCAG	1 cut(s)	724
PsuI	RGATCY	2 cut(s)	594, 704
SaqAI	TTAA	2 cut(s)	57, 453
SatI	GCNGC	8 cut(s)	30, 395, 489, 544, 571, 637, 832, 844
Sau3AI	GATC	5 cut(s)	174, 245, 589, 594, 704
Sau96I	GGNCC	1 cut(s)	233
SchI	GAGTC	3 cut(s)	169, 194, 736
ScrFI	CCNGG	1 cut(s)	750
SduI	GDGCHC	2 cut(s)	800, 918
SetI	ASST	9 cut(s)	12, 22, 198, 286, 303, 363, 447, 717, 905
SfaNI	GCATC	2 cut(s)	508, 860
SfcI	CTRYAG	1 cut(s)	720
Sse9I	AATT	4 cut(s)	238, 272, 372, 673
SspMI	CTAG	3 cut(s)	329, 462, 810
StyD4I	CCNGG	1 cut(s)	748
StyI	CCWWGG	1 cut(s)	809
TaaI	ACNGT	4 cut(s)	52, 62, 429, 582
TaqI	TCGA	2 cut(s)	198, 864
TasI	AATT	4 cut(s)	238, 272, 372, 673
TfiI	GAWTC	1 cut(s)	14
Tru1I	TTAA	2 cut(s)	57, 453
Tru9I	TTAA	2 cut(s)	57, 453
TscAI	CASTG	4 cut(s)	345, 625, 646, 729
TseFI	GTSAC	1 cut(s)	898
TseI	GCWGC	8 cut(s)	29, 394, 488, 543, 570, 636, 831, 843
Tsp45I	GTSAC	1 cut(s)	898
TspDTI	ATGAA	2 cut(s)	487, 753
TspRI	CASTG	4 cut(s)	345, 625, 646, 729
XceI	RCATGY	1 cut(s)	863
XmaJI	CCTAGG	1 cut(s)	809
XspI	CTAG	3 cut(s)	329, 462, 810

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.