Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0011183

Physical Location & Seq

Genomic Coordinates Forward (+)

23223249 .. 23224403

Gene Structure 1155 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g22250.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGAGGAGGTTGAGGCAGCTAACAAAGCAGCAGTTGAGAGCTGCCACAGAGTTCTGAATCTCTTGTGGCAACCAAAACCATGTAAGCTTTTGCAGGCGGAGACTGAGGTGGCAGTGTTCAAGTTCAAGAGAGTTCTCTCTCTCCTCAGCCATGGAAGAGGAAGAGTGAGAAAGTTGAAGAAAAACTTAAATCCACTACCTCTCCCTCACAATATCTTCTTAGATGCCCCTAATTATTCAGATACTTCACCAAAACCCCTCCAGTTCTCCCCTCCTACTTTCCCTAAAACCCCTCACAAAGAAAAAGTTTTTCTTGGAAGCCCAGTTCCCAAAACAAAAACTTTGCAACAGCACCAGGAAGAGAGAACAAAATTACAGTTTCACCCCCAGCGGGTGAAATATAGGGATGAAATGGTGTTCTCTGGGAGAAACAGTGGCATCAACCTTGCGTTTGATAGGTCTAGCTCTAGCTGCAAAACCTCCACGACGTCGGCCAGATCGTTCATGTCATGTTTGAGCATAGGCGGCTGTGCCGCCACCACCGGCAGAGATTCCTTTCGGTTAATAGGTGGTGTGCCTTGGGTTTCCGGTCAGATTTCCCAGCAGCAAAGGAGGTGCTTTGATGTGGTGGAAAATGGGAGTGCGGAATGTGGCAGCAGTGGCAAATGCCACTTTCCAAATAAGAGGAAACTGAAGGAGAAAAGATCTTTTAAGGTCCCTGCCATTAGTGACAAGATTTCAGACATTCCATCCGACGAGTATTCGTGGAGGAAGTACGGGCAGAAGCCGATCAAGGGCTCCTCGTATCCGAGGGGATACTACCAATGCAGCAGCATTAGAGGCTGTCCTGCGAGGAAACATGTGCAGAGATGCCTTGAAGACCCTGCAATGCTCGTAGTCACCTACCAAGGCGAGCATAAGCATTCACAATCCGCCCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_zn_clust WRKY

Protein Analysis

314

Amino Acids

35.22

Weight (kDa)

9.8

Isoelectric Point (pI)

56.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04670 AT3G04670 AT5G28650
fragaria_vesca	FvH4_6g02660 FvH4_6g02660
malus_domestica	MD04G1226400.v1.1 MD12G1243400.v1.1
prunus_persica	Prupe.6G345100_v2.0.a1
pyrus_communis	pycom04g19960 pycom12g22250
rosa_chinensis	RchiOBHm_Chr3g0450591
rosa_laevigata	RLG00000025718
rosa_multiflora	Rmu_sc0000078.1_g000042
rosa_roxburghii	Rroxscaffold_6G00428290
rosa_rugosa	Rorug02G0629000
rosa_samantha	Rh3AG029700 Rh3BG030100 Rh3CG029000 Rh3DG029800
rosa_wichuraiana	Rw3G002290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	491
AciI	CCGC	6 cut(s)	98, 391, 525, 534, 644, 933
AcoI	YGGCCR	1 cut(s)	492
AcuI	CTGAAG	1 cut(s)	713
AcyI	GRCGYC	1 cut(s)	488
AfaI	GTAC	1 cut(s)	776
AfiI	CCNNNNNNNGG	2 cut(s)	391, 794
AflIII	ACRYGT	1 cut(s)	859
AgsI	TTSAA	4 cut(s)	121, 127, 178, 878
AjnI	CCWGG	1 cut(s)	354
AloI	GAACNNNNNNTCC	2 cut(s)	309, 341
AluBI	AGCT	5 cut(s)	20, 42, 88, 465, 471
AluI	AGCT	5 cut(s)	20, 42, 88, 465, 471
Alw26I	GTCTC	1 cut(s)	95
AoxI	GGCC	1 cut(s)	492
ApeKI	GCWGC	8 cut(s)	17, 29, 42, 471, 604, 654, 828, 831
AspS9I	GGNCC	1 cut(s)	715
AsuHPI	GGTGA	4 cut(s)	240, 374, 406, 892
AvaII	GGWCC	1 cut(s)	715
BanII	GRGCYC	1 cut(s)	800
BbsI	GAAGAC	1 cut(s)	885
BbvCI	CCTCAGC	1 cut(s)	146
BbvI	GCAGC	8 cut(s)	29, 29, 41, 458, 616, 666, 840, 843
BccI	CCATC	1 cut(s)	757
BciT130I	CCWGG	1 cut(s)	356
BciVI	GTATCC	2 cut(s)	809, 816
BcoDI	GTCTC	1 cut(s)	95
BfaI	CTAG	2 cut(s)	462, 468
BfuI	GTATCC	2 cut(s)	809, 816
BglII	AGATCT	1 cut(s)	704
Bme1390I	CCNGG	1 cut(s)	356
Bme18I	GGWCC	1 cut(s)	715
BmgT120I	GGNCC	1 cut(s)	715
BmiI	GGNNCC	2 cut(s)	717, 799
BmrFI	CCNGG	1 cut(s)	356
BmrI	ACTGGG	2 cut(s)	317, 931
BmsI	GCATC	3 cut(s)	214, 447, 860
BmuI	ACTGGG	2 cut(s)	317, 931
BpiI	GAAGAC	1 cut(s)	885
BpmI	CTGGAG	1 cut(s)	245
Bpu10I	CCTNAGC	1 cut(s)	146
BsaHI	GRCGYC	1 cut(s)	488
BsaJI	CCNNGG	4 cut(s)	151, 578, 809, 907
BsaWI	WCCGGW	1 cut(s)	587
BsaXI	ACNNNNNCTCC	4 cut(s)	186, 216, 418, 448
Bsc4I	CCNNNNNNNGG	2 cut(s)	391, 794
Bse118I	RCCGGY	1 cut(s)	542
Bse1I	ACTGG	3 cut(s)	262, 323, 937
Bse3DI	GCAATG	1 cut(s)	894
BseBI	CCWGG	1 cut(s)	356
BseDI	CCNNGG	4 cut(s)	151, 578, 809, 907
BseGI	GGATG	2 cut(s)	412, 749
BseLI	CCNNNNNNNGG	2 cut(s)	391, 794
BseMI	GCAATG	1 cut(s)	894
BseMII	CTCAG	2 cut(s)	96, 160
BseNI	ACTGG	3 cut(s)	262, 323, 937
BseRI	GAGGAG	3 cut(s)	20, 134, 790
BseXI	GCAGC	8 cut(s)	29, 29, 41, 458, 616, 666, 840, 843
BseYI	CCCAGC	2 cut(s)	387, 600
BsgI	GTGCAG	1 cut(s)	884
BshFI	GGCC	1 cut(s)	494
BsiSI	CCGG	2 cut(s)	543, 588
BslFI	GGGAC	1 cut(s)	701
BslI	CCNNNNNNNGG	2 cut(s)	391, 794
BsmAI	GTCTC	1 cut(s)	95
BsmFI	GGGAC	1 cut(s)	701
BsmI	GAATGC	1 cut(s)	922
BsnI	GGCC	1 cut(s)	494
Bsp1286I	GDGCHC	1 cut(s)	800
Bsp143I	GATC	3 cut(s)	497, 704, 789
Bsp19I	CCATGG	1 cut(s)	151
BspACI	CCGC	6 cut(s)	98, 391, 525, 534, 644, 933
BspANI	GGCC	1 cut(s)	494
BspCNI	CTCAG	2 cut(s)	97, 159
BspLI	GGNNCC	2 cut(s)	717, 799
BsrDI	GCAATG	1 cut(s)	894
BsrFI	RCCGGY	1 cut(s)	542
BsrI	ACTGG	3 cut(s)	262, 323, 937
BssAI	RCCGGY	1 cut(s)	542
BssECI	CCNNGG	4 cut(s)	151, 578, 809, 907
BssMI	GATC	3 cut(s)	497, 704, 789
BssNI	GRCGYC	1 cut(s)	488
BssT1I	CCWWGG	3 cut(s)	151, 578, 907
Bst2UI	CCWGG	1 cut(s)	356
Bst4CI	ACNGT	2 cut(s)	378, 434
Bst6I	CTCTTC	3 cut(s)	151, 157, 354
BstACI	GRCGYC	1 cut(s)	488
BstC8I	GCNNGC	2 cut(s)	96, 914
BstDEI	CTNAG	3 cut(s)	105, 146, 220
BstDSI	CCRYGG	1 cut(s)	151
BstF5I	GGATG	2 cut(s)	412, 749
BstKTI	GATC	3 cut(s)	500, 707, 792
BstMAI	GTCTC	1 cut(s)	95
BstMBI	GATC	3 cut(s)	497, 704, 789
BstMWI	GCNNNNNNNGC	5 cut(s)	26, 471, 525, 660, 840
BstNI	CCWGG	1 cut(s)	356
BstNSI	RCATGY	1 cut(s)	863
BstSCI	CCNGG	1 cut(s)	354
BstV1I	GCAGC	8 cut(s)	29, 29, 41, 458, 616, 666, 840, 843
BstV2I	GAAGAC	1 cut(s)	885
BstX2I	RGATCY	1 cut(s)	704
BstYI	RGATCY	1 cut(s)	704
BsuI	GTATCC	2 cut(s)	809, 816
BsuRI	GGCC	1 cut(s)	494
BtgI	CCRYGG	1 cut(s)	151
BtsCI	GGATG	2 cut(s)	412, 749
BtsI	GCAGTG	2 cut(s)	120, 664
BtsIMutI	CAGTG	3 cut(s)	120, 439, 664
Cac8I	GCNNGC	2 cut(s)	96, 914
Cfr10I	RCCGGY	1 cut(s)	542
Cfr13I	GGNCC	1 cut(s)	715
Csp6I	GTAC	1 cut(s)	775
CviAII	CATG	5 cut(s)	81, 152, 505, 510, 860
CviQI	GTAC	1 cut(s)	775
DdeI	CTNAG	3 cut(s)	105, 146, 220
DpnI	GATC	3 cut(s)	499, 706, 791
DpnII	GATC	3 cut(s)	497, 704, 789
EaeI	YGGCCR	1 cut(s)	492
Eam1104I	CTCTTC	3 cut(s)	151, 157, 354
EarI	CTCTTC	3 cut(s)	151, 157, 354
EciI	GGCGGA	2 cut(s)	113, 922
Eco130I	CCWWGG	3 cut(s)	151, 578, 907
Eco24I	GRGCYC	1 cut(s)	800
Eco47I	GGWCC	1 cut(s)	715
Eco57I	CTGAAG	1 cut(s)	713
EcoO109I	RGGNCCY	1 cut(s)	715
EcoRII	CCWGG	1 cut(s)	354
EcoT14I	CCWWGG	3 cut(s)	151, 578, 907
EcoT38I	GRGCYC	1 cut(s)	800
ErhI	CCWWGG	3 cut(s)	151, 578, 907
FaeI	CATG	5 cut(s)	84, 155, 508, 513, 863
FaiI	YATR	8 cut(s)	82, 153, 402, 506, 511, 521, 861, 918
FalI	AAGNNNNNCTT	4 cut(s)	170, 202, 297, 329
FaqI	GGGAC	1 cut(s)	701
FatI	CATG	5 cut(s)	80, 151, 504, 509, 859
FauI	CCCGC	1 cut(s)	384
FokI	GGATG	2 cut(s)	419, 736
FriOI	GRGCYC	1 cut(s)	800
FspBI	CTAG	2 cut(s)	462, 468
GsaI	CCCAGC	2 cut(s)	391, 604
GsuI	CTGGAG	1 cut(s)	245
HaeIII	GGCC	1 cut(s)	494
HapII	CCGG	2 cut(s)	543, 588
Hin1I	GRCGYC	1 cut(s)	488
Hin1II	CATG	5 cut(s)	84, 155, 508, 513, 863
HindIII	AAGCTT	1 cut(s)	86
HinfI	GANTC	2 cut(s)	58, 551
HpaII	CCGG	2 cut(s)	543, 588
HphI	GGTGA	4 cut(s)	240, 374, 406, 892
Hpy188I	TCNGA	6 cut(s)	57, 241, 594, 742, 754, 810
Hpy188III	TCNNGA	1 cut(s)	127
Hpy99I	CGWCG	3 cut(s)	490, 493, 758
HpyAV	CCTTC	1 cut(s)	688
HpyCH4III	ACNGT	2 cut(s)	378, 434
HpyCH4IV	ACGT	1 cut(s)	488
HpyCH4V	TGCA	6 cut(s)	94, 346, 474, 828, 865, 887
HpyF10VI	GCNNNNNNNGC	5 cut(s)	26, 471, 525, 660, 840
HpyF3I	CTNAG	3 cut(s)	105, 146, 220
HpySE526I	ACGT	1 cut(s)	488
Hsp92I	GRCGYC	1 cut(s)	488
Hsp92II	CATG	5 cut(s)	84, 155, 508, 513, 863
Kzo9I	GATC	3 cut(s)	497, 704, 789
LmnI	GCTCC	1 cut(s)	803
Lsp1109I	GCAGC	8 cut(s)	29, 29, 41, 458, 616, 666, 840, 843
LweI	GCATC	3 cut(s)	214, 447, 860
MaeI	CTAG	2 cut(s)	462, 468
MaeII	ACGT	1 cut(s)	488
MaeIII	GTNAC	2 cut(s)	728, 898
MalI	GATC	3 cut(s)	499, 706, 791
MboI	GATC	3 cut(s)	497, 704, 789
MboII	GAAGA	6 cut(s)	168, 174, 190, 208, 371, 890
MflI	RGATCY	1 cut(s)	704
MhlI	GDGCHC	1 cut(s)	800
MluCI	AATT	2 cut(s)	232, 371
MmeI	TCCRAC	1 cut(s)	777
MseI	TTAA	3 cut(s)	188, 563, 711
MspA1I	CMGCKG	1 cut(s)	391
MspI	CCGG	2 cut(s)	543, 588
MspR9I	CCNGG	1 cut(s)	356
Mva1269I	GAATGC	1 cut(s)	922
MvaI	CCWGG	1 cut(s)	356
MwoI	GCNNNNNNNGC	5 cut(s)	26, 471, 525, 660, 840
NcoI	CCATGG	1 cut(s)	151
NdeII	GATC	3 cut(s)	497, 704, 789
NlaIII	CATG	5 cut(s)	84, 155, 508, 513, 863
NlaIV	GGNNCC	2 cut(s)	717, 799
NmuCI	GTSAC	2 cut(s)	728, 898
NspI	RCATGY	1 cut(s)	863
PciI	ACATGT	1 cut(s)	859
PcsI	WCGNNNNNNNCGW	1 cut(s)	497
PctI	GAATGC	1 cut(s)	922
PfeI	GAWTC	2 cut(s)	58, 551
PpuMI	RGGWCCY	1 cut(s)	715
PscI	ACATGT	1 cut(s)	859
Psp5II	RGGWCCY	1 cut(s)	715
Psp6I	CCWGG	1 cut(s)	354
PspFI	CCCAGC	2 cut(s)	387, 600
PspGI	CCWGG	1 cut(s)	354
PspN4I	GGNNCC	2 cut(s)	717, 799
PspPI	GGNCC	1 cut(s)	715
PspPPI	RGGWCCY	1 cut(s)	715
PsuI	RGATCY	1 cut(s)	704
RsaI	GTAC	1 cut(s)	776
RsaNI	GTAC	1 cut(s)	775
SaqAI	TTAA	3 cut(s)	188, 563, 711
Sau3AI	GATC	3 cut(s)	497, 704, 789
Sau96I	GGNCC	1 cut(s)	715
ScrFI	CCNGG	1 cut(s)	356
SduI	GDGCHC	1 cut(s)	800
SfaNI	GCATC	3 cut(s)	214, 447, 860
SinI	GGWCC	1 cut(s)	715
Sse9I	AATT	2 cut(s)	232, 371
SsiI	CCGC	6 cut(s)	98, 391, 525, 534, 644, 933
SspMI	CTAG	2 cut(s)	462, 468
StyD4I	CCNGG	1 cut(s)	354
StyI	CCWWGG	3 cut(s)	151, 578, 907
TaaI	ACNGT	2 cut(s)	378, 434
TaiI	ACGT	1 cut(s)	491
TasI	AATT	2 cut(s)	232, 371
TauI	GCSGC	2 cut(s)	528, 536
TfiI	GAWTC	2 cut(s)	58, 551
Tru1I	TTAA	3 cut(s)	188, 563, 711
Tru9I	TTAA	3 cut(s)	188, 563, 711
TscAI	CASTG	3 cut(s)	120, 439, 664
TseFI	GTSAC	2 cut(s)	728, 898
TseI	GCWGC	8 cut(s)	17, 29, 42, 471, 604, 654, 828, 831
Tsp45I	GTSAC	2 cut(s)	728, 898
TspDTI	ATGAA	2 cut(s)	423, 493
TspRI	CASTG	3 cut(s)	120, 439, 664
VpaK11BI	GGWCC	1 cut(s)	715
XceI	RCATGY	1 cut(s)	863
XspI	CTAG	2 cut(s)	462, 468
ZraI	GACGTC	1 cut(s)	489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.