Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0011183

Physical Location & Seq

Genomic Coordinates Reverse (-)

1994610 .. 1995926

Gene Structure 1317 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG029000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGAGGAGGTTGAATCAGCTAACAAAGCAGCAGTAGAGAGTTGCCATACAGTTCTTAACAGTCTCTTGTGCAAACCCAAAAATGATATTCAGTCTAAAAGTTTAGGGGTGCAGACTGAGGAGGCTGTGGTGAAGTTCAAGAGAGTTGTGTCTCTTCTGAGTCATGGAAGAAGGATCAGAAAGTTGAAGAAGAAGCTCGACTCATCTTTGCCTCAAAGCCTCTTCTTGGATGGCCCTAATTACAGATCAGACATTTCAAGCAAAACCCTCCAATTACTCCCAGCTACTTTTCCTCAAAACCTACACACACAAAACCAGAAAGTGTTTCTAGGAAACCCAGTGTTGGATATGAGTATCAAGCTTCCTCTCCAAATTGCCAAACCAAAACCATTGCAGCAGTTACATAGACTTCAAGTCCATCCCCAACAGTTCACCGGCATAAACCTTGCATTTAACAAGCCTAGCACCACACCCTCCTTGTCAAACGCAGCGTCGTTCATATCATGTTTGAGCATGGATGCTGGTGGTGTGGCTAACTATGGCAGCAACTCCTTCAGACTAATCAATGGCAGCGTGCCACAGTCGTCTGATCAGATCTCGCAACAACAAAGGAGGAGCAGTGGTGCAGAGCAAAGCAGCAGTGTAAAATGTGGCAGTAATGATAAGTGTCCTAATTCAAGGAAGAGGTCAGTTATTATTCTGCATTCAAAGTTTTCGAATAGGCGCTGTTGGTTTTATTTAGATCAAACTAATGTTGTTTGTGTTCATAGGAGACTGAGGGTGAGAAGATCTTTCAAGGTTCCTGCAGTGAGTCAGAATGTTGCAAACATTCCTGGTGATGAGTATTCATGGAGGAAATATGGGCAGAAGCCAATCAAGGGCTCTCCTTATCCTAGGGGATATTATAAATGTAGCAGCATGAGAGGCTGCCCAGCAAGGAAACATGTCGAGCGATGCGTGGAAGACCCCTCAATGCTGATAGTCACCTATGAGGGCGAGCACAAGCATTCGCAATCTGCCCATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Plant_zn_clust WRKY

Protein Analysis

342

Amino Acids

38.32

Weight (kDa)

9.94

Isoelectric Point (pI)

61.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	280 - 336	5.3e-27	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011183)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04670 AT3G04670 AT5G28650
fragaria_vesca	FvH4_6g02660 FvH4_6g02660
malus_domestica	MD04G1226400.v1.1 MD12G1243400.v1.1
prunus_persica	Prupe.6G345100_v2.0.a1
pyrus_communis	pycom04g19960 pycom12g22250
rosa_chinensis	RchiOBHm_Chr3g0450591
rosa_laevigata	RLG00000025718
rosa_multiflora	Rmu_sc0000078.1_g000042
rosa_roxburghii	Rroxscaffold_6G00428290
rosa_rugosa	Rorug02G0629000
rosa_samantha	Rh3AG029700 Rh3BG030100 Rh3CG029000 Rh3DG029800
rosa_wichuraiana	Rw3G002290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	906
AclWI	GGATC	1 cut(s)	182
AcuI	CTGAAG	1 cut(s)	538
AfiI	CCNNNNNNNGG	3 cut(s)	226, 343, 878
AflIII	ACRYGT	1 cut(s)	943
AgsI	TTSAA	8 cut(s)	14, 139, 187, 258, 413, 678, 708, 796
AhdI	GACNNNNNGTC	1 cut(s)	413
AjnI	CCWGG	1 cut(s)	832
AluBI	AGCT	4 cut(s)	20, 196, 284, 361
AluI	AGCT	4 cut(s)	20, 196, 284, 361
Alw21I	GWGCWC	1 cut(s)	1002
Alw26I	GTCTC	3 cut(s)	68, 156, 766
AlwI	GGATC	1 cut(s)	182
AoxI	GGCC	1 cut(s)	232
ApeKI	GCWGC	8 cut(s)	29, 394, 488, 543, 570, 636, 915, 927
ArsI	GACNNNNNNTTYG	2 cut(s)	476, 508
AspA2I	CCTAGG	1 cut(s)	893
AspLEI	GCGC	1 cut(s)	726
AspS9I	GGNCC	1 cut(s)	233
AsuHPI	GGTGA	5 cut(s)	142, 424, 793, 848, 976
AsuII	TTCGAA	1 cut(s)	716
AvrII	CCTAGG	1 cut(s)	893
BanII	GRGCYC	1 cut(s)	884
BbsI	GAAGAC	1 cut(s)	969
Bbv12I	GWGCWC	1 cut(s)	1002
BbvI	GCAGC	8 cut(s)	41, 406, 500, 555, 582, 648, 914, 927
BccI	CCATC	2 cut(s)	224, 426
BciT130I	CCWGG	1 cut(s)	834
BclI	TGATCA	1 cut(s)	589
BcoDI	GTCTC	3 cut(s)	68, 156, 766
BfaI	CTAG	3 cut(s)	329, 462, 894
BfmI	CTRYAG	1 cut(s)	804
BfoI	RGCGCY	1 cut(s)	727
BglII	AGATCT	2 cut(s)	594, 788
BisI	GCNGC	8 cut(s)	30, 395, 489, 544, 571, 637, 916, 928
BlnI	CCTAGG	1 cut(s)	893
BlsI	GCNGC	8 cut(s)	31, 396, 490, 545, 572, 638, 917, 929
Bme1390I	CCNGG	1 cut(s)	834
BmeRI	GACNNNNNGTC	1 cut(s)	413
BmgT120I	GGNCC	1 cut(s)	233
BmiI	GGNNCC	1 cut(s)	801
BmrFI	CCNGG	1 cut(s)	834
BmrI	ACTGGG	1 cut(s)	332
BmsI	GCATC	2 cut(s)	508, 944
BmuI	ACTGGG	1 cut(s)	332
BpiI	GAAGAC	1 cut(s)	969
Bpu14I	TTCGAA	1 cut(s)	716
BsaJI	CCNNGG	1 cut(s)	893
BsaXI	ACNNNNNCTCC	4 cut(s)	604, 607, 634, 637
Bsc4I	CCNNNNNNNGG	3 cut(s)	226, 343, 878
Bse118I	RCCGGY	1 cut(s)	434
Bse1I	ACTGG	1 cut(s)	338
Bse3DI	GCAATG	1 cut(s)	389
BseBI	CCWGG	1 cut(s)	834
BseDI	CCNNGG	1 cut(s)	893
BseGI	GGATG	3 cut(s)	235, 418, 523
BseLI	CCNNNNNNNGG	3 cut(s)	226, 343, 878
BseMI	GCAATG	1 cut(s)	389
BseMII	CTCAG	3 cut(s)	108, 149, 767
BseNI	ACTGG	1 cut(s)	338
BseRI	GAGGAG	3 cut(s)	20, 134, 628
BseXI	GCAGC	8 cut(s)	41, 406, 500, 555, 582, 648, 914, 927
BseYI	CCCAGC	2 cut(s)	280, 931
BsgI	GTGCAG	2 cut(s)	131, 645
BshFI	GGCC	1 cut(s)	234
BsiHKAI	GWGCWC	1 cut(s)	1002
BsiSI	CCGG	1 cut(s)	435
BslI	CCNNNNNNNGG	3 cut(s)	226, 343, 878
BsmAI	GTCTC	3 cut(s)	68, 156, 766
BsmI	GAATGC	2 cut(s)	703, 1006
BsnI	GGCC	1 cut(s)	234
Bsp119I	TTCGAA	1 cut(s)	716
Bsp1286I	GDGCHC	2 cut(s)	884, 1002
Bsp143I	GATC	6 cut(s)	174, 245, 589, 594, 742, 788
BspANI	GGCC	1 cut(s)	234
BspCNI	CTCAG	3 cut(s)	109, 150, 768
BspLI	GGNNCC	1 cut(s)	801
BspMAI	CTGCAG	1 cut(s)	808
BspPI	GGATC	1 cut(s)	182
BspT104I	TTCGAA	1 cut(s)	716
BsrDI	GCAATG	1 cut(s)	389
BsrFI	RCCGGY	1 cut(s)	434
BsrI	ACTGG	1 cut(s)	338
BssAI	RCCGGY	1 cut(s)	434
BssECI	CCNNGG	1 cut(s)	893
BssMI	GATC	6 cut(s)	174, 245, 589, 594, 742, 788
BssT1I	CCWWGG	1 cut(s)	893
Bst2UI	CCWGG	1 cut(s)	834
Bst4CI	ACNGT	4 cut(s)	52, 62, 429, 582
Bst6I	CTCTTC	3 cut(s)	159, 227, 677
BstBI	TTCGAA	1 cut(s)	716
BstC8I	GCNNGC	2 cut(s)	575, 998
BstDEI	CTNAG	3 cut(s)	117, 158, 776
BstF5I	GGATG	3 cut(s)	235, 418, 523
BstH2I	RGCGCY	1 cut(s)	727
BstHHI	GCGC	1 cut(s)	726
BstKTI	GATC	6 cut(s)	177, 248, 592, 597, 745, 791
BstMAI	GTCTC	3 cut(s)	68, 156, 766
BstMBI	GATC	6 cut(s)	174, 245, 589, 594, 742, 788
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 924
BstNI	CCWGG	1 cut(s)	834
BstNSI	RCATGY	1 cut(s)	947
BstSCI	CCNGG	1 cut(s)	832
BstSFI	CTRYAG	1 cut(s)	804
BstV1I	GCAGC	8 cut(s)	41, 406, 500, 555, 582, 648, 914, 927
BstV2I	GAAGAC	1 cut(s)	969
BstX2I	RGATCY	2 cut(s)	594, 788
BstYI	RGATCY	2 cut(s)	594, 788
BsuRI	GGCC	1 cut(s)	234
BtgZI	GCGATG	1 cut(s)	967
BtsCI	GGATG	3 cut(s)	235, 418, 523
BtsI	GCAGTG	3 cut(s)	625, 646, 813
BtsIMutI	CAGTG	4 cut(s)	345, 625, 646, 813
Cac8I	GCNNGC	2 cut(s)	575, 998
CfoI	GCGC	1 cut(s)	726
Cfr10I	RCCGGY	1 cut(s)	434
Cfr13I	GGNCC	1 cut(s)	233
CseI	GACGC	1 cut(s)	480
CviAII	CATG	6 cut(s)	164, 504, 514, 849, 919, 944
DdeI	CTNAG	3 cut(s)	117, 158, 776
DpnI	GATC	6 cut(s)	176, 247, 591, 596, 744, 790
DpnII	GATC	6 cut(s)	174, 245, 589, 594, 742, 788
DriI	GACNNNNNGTC	1 cut(s)	413
Eam1104I	CTCTTC	3 cut(s)	159, 227, 677
Eam1105I	GACNNNNNGTC	1 cut(s)	413
EarI	CTCTTC	3 cut(s)	159, 227, 677
Eco130I	CCWWGG	1 cut(s)	893
Eco24I	GRGCYC	1 cut(s)	884
Eco57I	CTGAAG	1 cut(s)	538
EcoRII	CCWGG	1 cut(s)	832
EcoT14I	CCWWGG	1 cut(s)	893
EcoT38I	GRGCYC	1 cut(s)	884
ErhI	CCWWGG	1 cut(s)	893
FaeI	CATG	6 cut(s)	167, 507, 517, 852, 922, 947
FatI	CATG	6 cut(s)	163, 503, 513, 848, 918, 943
FbaI	TGATCA	1 cut(s)	589
Fnu4HI	GCNGC	8 cut(s)	30, 395, 489, 544, 571, 637, 916, 928
FokI	GGATG	3 cut(s)	242, 405, 530
FriOI	GRGCYC	1 cut(s)	884
Fsp4HI	GCNGC	8 cut(s)	30, 395, 489, 544, 571, 637, 916, 928
FspBI	CTAG	3 cut(s)	329, 462, 894
GlaI	GCGC	1 cut(s)	725
GluI	GCNGC	8 cut(s)	30, 395, 489, 544, 571, 637, 916, 928
GsaI	CCCAGC	2 cut(s)	284, 935
HaeII	RGCGCY	1 cut(s)	727
HaeIII	GGCC	1 cut(s)	234
HapII	CCGG	1 cut(s)	435
HgaI	GACGC	1 cut(s)	480
HhaI	GCGC	1 cut(s)	726
Hin1II	CATG	6 cut(s)	167, 507, 517, 852, 922, 947
Hin6I	GCGC	1 cut(s)	724
HinP1I	GCGC	1 cut(s)	724
HindIII	AAGCTT	1 cut(s)	359
HinfI	GANTC	4 cut(s)	14, 160, 200, 811
HpaII	CCGG	1 cut(s)	435
HphI	GGTGA	5 cut(s)	142, 424, 793, 848, 976
Hpy166II	GTNNAC	1 cut(s)	432
Hpy188I	TCNGA	7 cut(s)	159, 179, 250, 557, 589, 594, 816
Hpy188III	TCNNGA	1 cut(s)	139
Hpy8I	GTNNAC	1 cut(s)	432
Hpy99I	CGWCG	1 cut(s)	496
HpyAV	CCTTC	2 cut(s)	165, 562
HpyCH4III	ACNGT	4 cut(s)	52, 62, 429, 582
HpyCH4V	TGCA	8 cut(s)	72, 112, 394, 449, 626, 703, 806, 824
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 924
HpyF3I	CTNAG	3 cut(s)	117, 158, 776
Hsp92II	CATG	6 cut(s)	167, 507, 517, 852, 922, 947
HspAI	GCGC	1 cut(s)	724
Ksp22I	TGATCA	1 cut(s)	589
Kzo9I	GATC	6 cut(s)	174, 245, 589, 594, 742, 788
LmnI	GCTCC	1 cut(s)	615
LpnPI	CCDG	9 cut(s)	294, 329, 351, 448, 507, 816, 819, 846, 945
Lsp1109I	GCAGC	8 cut(s)	41, 406, 500, 555, 582, 648, 914, 927
LweI	GCATC	2 cut(s)	508, 944
MaeI	CTAG	3 cut(s)	329, 462, 894
MaeIII	GTNAC	2 cut(s)	399, 982
MalI	GATC	6 cut(s)	176, 247, 591, 596, 744, 790
MboI	GATC	6 cut(s)	174, 245, 589, 594, 742, 788
MboII	GAAGA	8 cut(s)	146, 180, 199, 202, 214, 694, 798, 974
MflI	RGATCY	2 cut(s)	594, 788
MhlI	GDGCHC	2 cut(s)	884, 1002
MluCI	AATT	4 cut(s)	238, 272, 372, 673
MlyI	GAGTC	3 cut(s)	169, 194, 820
MmeI	TCCRAC	1 cut(s)	324
MseI	TTAA	2 cut(s)	57, 453
MspI	CCGG	1 cut(s)	435
MspR9I	CCNGG	1 cut(s)	834
Mva1269I	GAATGC	2 cut(s)	703, 1006
MvaI	CCWGG	1 cut(s)	834
MwoI	GCNNNNNNNGC	2 cut(s)	26, 924
NdeII	GATC	6 cut(s)	174, 245, 589, 594, 742, 788
NlaIII	CATG	6 cut(s)	167, 507, 517, 852, 922, 947
NlaIV	GGNNCC	1 cut(s)	801
NmuCI	GTSAC	1 cut(s)	982
NspI	RCATGY	1 cut(s)	947
NspV	TTCGAA	1 cut(s)	716
PciI	ACATGT	1 cut(s)	943
PcsI	WCGNNNNNNNCGW	1 cut(s)	954
PctI	GAATGC	2 cut(s)	703, 1006
PfeI	GAWTC	1 cut(s)	14
PkrI	GCNGC	8 cut(s)	31, 396, 490, 545, 572, 638, 917, 929
PleI	GAGTC	3 cut(s)	168, 194, 819
PpsI	GAGTC	3 cut(s)	168, 194, 819
PscI	ACATGT	1 cut(s)	943
PsiI	TTATAA	1 cut(s)	906
Psp6I	CCWGG	1 cut(s)	832
PspFI	CCCAGC	2 cut(s)	280, 931
PspGI	CCWGG	1 cut(s)	832
PspN4I	GGNNCC	1 cut(s)	801
PspPI	GGNCC	1 cut(s)	233
PstI	CTGCAG	1 cut(s)	808
PsuI	RGATCY	2 cut(s)	594, 788
SaqAI	TTAA	2 cut(s)	57, 453
SatI	GCNGC	8 cut(s)	30, 395, 489, 544, 571, 637, 916, 928
Sau3AI	GATC	6 cut(s)	174, 245, 589, 594, 742, 788
Sau96I	GGNCC	1 cut(s)	233
SchI	GAGTC	3 cut(s)	169, 194, 820
ScrFI	CCNGG	1 cut(s)	834
SduI	GDGCHC	2 cut(s)	884, 1002
SfaNI	GCATC	2 cut(s)	508, 944
SfcI	CTRYAG	1 cut(s)	804
SfuI	TTCGAA	1 cut(s)	716
Sse9I	AATT	4 cut(s)	238, 272, 372, 673
SspMI	CTAG	3 cut(s)	329, 462, 894
StyD4I	CCNGG	1 cut(s)	832
StyI	CCWWGG	1 cut(s)	893
TaaI	ACNGT	4 cut(s)	52, 62, 429, 582
TaqI	TCGA	3 cut(s)	198, 716, 948
TasI	AATT	4 cut(s)	238, 272, 372, 673
TfiI	GAWTC	1 cut(s)	14
Tru1I	TTAA	2 cut(s)	57, 453
Tru9I	TTAA	2 cut(s)	57, 453
TscAI	CASTG	4 cut(s)	345, 625, 646, 813
TseFI	GTSAC	1 cut(s)	982
TseI	GCWGC	8 cut(s)	29, 394, 488, 543, 570, 636, 915, 927
Tsp45I	GTSAC	1 cut(s)	982
TspDTI	ATGAA	3 cut(s)	487, 755, 837
TspRI	CASTG	4 cut(s)	345, 625, 646, 813
XceI	RCATGY	1 cut(s)	947
XmaJI	CCTAGG	1 cut(s)	893
XspI	CTAG	3 cut(s)	329, 462, 894

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.