Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006876

Physical Location & Seq

Genomic Coordinates Reverse (-)

1269722 .. 1273004

Gene Structure 3283 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G04680.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

ATGGCGTACGGTGGTCCGTCCATGAATCCACCGGCTTTGAGTGGAGCTGTTCCCGGGTCTGCTAATCTGAAGCAAGTGAAATTGGAGAGAGAAAGCGAGCTCAGGATCGAAGTCTCTGAAGAGCCTCTCAGACTCCGTGTGGTTAACGGGACCGCTGAGATTTTTGGCTCTGAACTGCCTCCTGAAATATGGCGTACCTTCCCTCCTCGCATGAAATTTGCGGTTTTCACTTGGTATGGAGCGACAATTGAGATGGATGGTGTCACGGAAACTGACTATACAGCAGATGAGACGCCGATGGTCAGCTACATTAATGTGCATGCCATACTAGATGCAAGGAGACGTTTTGCCAAAGCTTCCACATCTAATGACCCAGAATCTTCTCAGGGACCTCGGGTTATTGTAGTAGGGCCTACGGATTCCGGGAAGAGCACATTGACAAAGATGCTCCTTAGTTGGGCAGCTAAACAGGGATGGAGACCTACATTTGTAGACCTTGATGTTGGCCAAGGCTCGATTACAATACCAGGATCTATTGCTGCTGCCCCTATTGAAATGCCACTGGATCCAGTTGAAGGGTTTCCTCTTGATATGGCCCTTGTTTACTACTACGGCCACGCATCACCAAATATGAACGTTGAACTGTACAAAGCTCTGGTGAAAGAGCTTGCTCAAGTTCTGGAGAAACAGTTTGTCGGAAACCCTGAATCGCGAGCTGCTGGAATGGTGATCAACACAATGGGATGGATCGAGGGGATTGGTTATGAGCTGCTTCTCCACGCAATAGACACATTCAATGCCTCGGTTGTACTTGTATTGGGTCAGGAAAAACTCTTCAGCAGGCTTAAAGATGTGCTGAGAAGTAAGAGTAATGTCGACGTCGTGAAGCTTCACAAGTCTGGTGGAGTTGTAGCCAGGGTCAAAGAGGTCCGTAAAAGATCAAGGAACTTTAAGATTCAGGAATATTTTTACGGTTTATCGAAAGAACTCTCTCCGTATGCCAATACATCGAGTTTCAGTGATCTGCAAGTGTTCCGAATTGGTGGTGGACCACAAGCGCCAAAATCGGCTCTTCCAGCCGGGTCTACCTCGGTTTCAAATCCGTTGCGGGTGACGCCTGTAAATATCGATGATCGGGATCTGCTGCATTCTGTTCTTGCTGTCTCATACGCAGAAGAACCAGACCAGATCATCTCAAGCAATGTTTCTGGGTTTGTGTATGTGACGGAAGTTAATGTGCAGAAGAAGAAGATAACGTATTTAGCACCATCGCCTGGGACATTACCTAGCAAGTTGTTGGTCGCTGGATCATTGGCATGGCTTGAGTCAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000394 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006378 GO:0006379 GO:0006388 GO:0006396 GO:0006397 GO:0006399 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0008380 GO:0009791 GO:0009908 GO:0009987 GO:0010228 GO:0010467 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019205 GO:0022414 GO:0031123 GO:0031124 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0051731 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090567 GO:0099402 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CLP1_N CLP1_P Clp1

Protein Analysis

444

Amino Acids

48.42

Weight (kDa)

6.29

Isoelectric Point (pI)

46.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CLP1_N	PF16573	27 - 115	2.5e-29	N-terminal beta-sandwich domain of polyadenylation factor
CLP1_P	PF16575	137 - 325	2e-70	mRNA cleavage and polyadenylation factor CLP1 P-loop
Clp1	PF06807	330 - 442	2e-34	Pre-mRNA cleavage complex II protein Clp1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04680 AT3G04680 AT3G04680
fragaria_vesca	FvH4_6g49260 FvH4_6g49260
malus_domestica	MD09G1046200.v1.1 MD09G1046500.v1.1 MD17G1047000.v1.1
prunus_persica	Prupe.3G272100_v2.0.a1
pyrus_communis	pycom09g03810 pycom09g04270 pycom111g03580 pycom111g03600 pycom111g03650 pycom17g04190
rosa_chinensis	RchiOBHm_Chr2g0169161
rosa_laevigata	RLG00000021838
rosa_multiflora	Rmu_ssc0000440.1_g000003
rosa_roxburghii	Rroxscaffold_2G00082380
rosa_rugosa	Rorug02G0537700 Rorug02G0537800
rosa_samantha	Rh2AG609300 Rh2BG622300 Rh2CG591000 Rh2DG633000
rosa_wichuraiana	Rw2G050540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	882
AccB7I	CCANNNNNTGG	1 cut(s)	1274
AccI	GTMKAC	3 cut(s)	492, 876, 1085
AccII	CGCG	1 cut(s)	712
AciI	CCGC	3 cut(s)	153, 221, 1108
AclI	AACGTT	1 cut(s)	636
AclWI	GGATC	7 cut(s)	113, 538, 560, 573, 755, 1146, 1315
AcoI	YGGCCR	2 cut(s)	505, 613
AcsI	RAATTY	1 cut(s)	215
AcuI	CTGAAG	3 cut(s)	89, 138, 820
AcyI	GRCGYC	3 cut(s)	293, 879, 1115
AfaI	GTAC	4 cut(s)	8, 196, 647, 810
AfiI	CCNNNNNNNGG	3 cut(s)	457, 575, 1274
AgsI	TTSAA	5 cut(s)	554, 575, 641, 796, 1098
AjnI	CCWGG	3 cut(s)	526, 914, 1273
Alw21I	GWGCWC	2 cut(s)	102, 434
Alw26I	GTCTC	5 cut(s)	118, 284, 334, 472, 1168
AlwI	GGATC	7 cut(s)	113, 538, 560, 573, 755, 1146, 1315
Ama87I	CYCGRG	2 cut(s)	53, 393
AoxI	GGCC	4 cut(s)	410, 505, 594, 613
ApeKI	GCWGC	6 cut(s)	461, 539, 542, 716, 769, 1144
ApoI	RAATTY	1 cut(s)	215
AseI	ATTAAT	1 cut(s)	312
Asp700I	GAANNNNTTC	1 cut(s)	579
AspLEI	GCGC	1 cut(s)	1060
AspS9I	GGNCC	7 cut(s)	14, 150, 389, 410, 595, 928, 1049
AsuC2I	CCSGG	4 cut(s)	54, 55, 424, 1081
AsuHPI	GGTGA	4 cut(s)	615, 670, 739, 1123
AvaI	CYCGRG	2 cut(s)	53, 393
AvaII	GGWCC	5 cut(s)	14, 150, 389, 928, 1049
BalI	TGGCCA	1 cut(s)	507
BamHI	GGATCC	1 cut(s)	565
BanII	GRGCYC	1 cut(s)	102
Bbv12I	GWGCWC	2 cut(s)	102, 434
BbvI	GCAGC	6 cut(s)	473, 526, 529, 703, 756, 1131
BccI	CCATC	6 cut(s)	247, 251, 292, 468, 738, 1276
BceAI	ACGGC	1 cut(s)	628
BciT130I	CCWGG	3 cut(s)	528, 916, 1275
BclI	TGATCA	1 cut(s)	729
BcnI	CCSGG	4 cut(s)	54, 55, 424, 1081
BcoDI	GTCTC	5 cut(s)	118, 284, 334, 472, 1168
BfaI	CTAG	2 cut(s)	329, 1287
BfoI	RGCGCY	1 cut(s)	1061
BisI	GCNGC	6 cut(s)	462, 540, 543, 717, 770, 1145
BlsI	GCNGC	6 cut(s)	463, 541, 544, 718, 771, 1146
Bme1390I	CCNGG	7 cut(s)	54, 55, 424, 528, 916, 1081, 1275
Bme18I	GGWCC	5 cut(s)	14, 150, 389, 928, 1049
BmeT110I	CYCGRG	2 cut(s)	53, 393
BmgT120I	GGNCC	7 cut(s)	14, 150, 389, 410, 595, 928, 1049
BmiI	GGNNCC	3 cut(s)	151, 390, 567
BmrFI	CCNGG	7 cut(s)	54, 55, 424, 528, 916, 1081, 1275
BmsI	GCATC	3 cut(s)	322, 435, 629
BpmI	CTGGAG	1 cut(s)	701
Bpu10I	CCTNAGC	1 cut(s)	101
BpuEI	CTTGAG	2 cut(s)	657, 1180
BpuMI	CCSGG	4 cut(s)	54, 55, 424, 1081
Bsa29I	ATCGAT	1 cut(s)	1128
BsaBI	GATNNNNATC	1 cut(s)	1137
BsaHI	GRCGYC	3 cut(s)	293, 879, 1115
BsaI	GGTCTC	1 cut(s)	472
BsaJI	CCNNGG	7 cut(s)	53, 392, 508, 801, 915, 1089, 1274
BsaXI	ACNNNNNCTCC	4 cut(s)	187, 217, 674, 704
Bsc4I	CCNNNNNNNGG	3 cut(s)	457, 575, 1274
Bse118I	RCCGGY	1 cut(s)	31
Bse1I	ACTGG	2 cut(s)	567, 569
Bse3DI	GCAATG	1 cut(s)	1207
Bse8I	GATNNNNATC	1 cut(s)	1137
BseBI	CCWGG	3 cut(s)	528, 916, 1275
BseCI	ATCGAT	1 cut(s)	1128
BseDI	CCNNGG	7 cut(s)	53, 392, 508, 801, 915, 1089, 1274
BseGI	GGATG	3 cut(s)	262, 479, 749
BseJI	GATNNNNATC	1 cut(s)	1137
BseLI	CCNNNNNNNGG	3 cut(s)	457, 575, 1274
BseMI	GCAATG	1 cut(s)	1207
BseMII	CTCAG	5 cut(s)	115, 142, 147, 398, 848
BseNI	ACTGG	2 cut(s)	567, 569
BseRI	GAGGAG	1 cut(s)	195
BseXI	GCAGC	6 cut(s)	473, 526, 529, 703, 756, 1131
BsgI	GTGCAG	1 cut(s)	1259
Bsh1236I	CGCG	1 cut(s)	712
BshFI	GGCC	4 cut(s)	412, 507, 596, 615
BshVI	ATCGAT	1 cut(s)	1128
BsiHKAI	GWGCWC	2 cut(s)	102, 434
BsiHKCI	CYCGRG	2 cut(s)	53, 393
BsiSI	CCGG	4 cut(s)	32, 54, 423, 1080
BsiWI	CGTACG	1 cut(s)	6
BslFI	GGGAC	3 cut(s)	163, 402, 1291
BslI	CCNNNNNNNGG	3 cut(s)	457, 575, 1274
BsmAI	GTCTC	5 cut(s)	118, 284, 334, 472, 1168
BsmBI	CGTCTC	2 cut(s)	284, 334
BsmFI	GGGAC	3 cut(s)	163, 402, 1291
BsmI	GAATGC	1 cut(s)	1147
BsnI	GGCC	4 cut(s)	412, 507, 596, 615
Bso31I	GGTCTC	1 cut(s)	472
BsoBI	CYCGRG	2 cut(s)	53, 393
Bsp1286I	GDGCHC	2 cut(s)	102, 434
Bsp1407I	TGTACA	1 cut(s)	645
Bsp68I	TCGCGA	1 cut(s)	712
BspACI	CCGC	3 cut(s)	153, 221, 1108
BspANI	GGCC	4 cut(s)	412, 507, 596, 615
BspCNI	CTCAG	5 cut(s)	114, 141, 148, 397, 849
BspDI	ATCGAT	1 cut(s)	1128
BspFNI	CGCG	1 cut(s)	712
BspLI	GGNNCC	3 cut(s)	151, 390, 567
BspPI	GGATC	7 cut(s)	113, 538, 560, 573, 755, 1146, 1315
BspQI	GCTCTTC	3 cut(s)	114, 422, 1077
BspTNI	GGTCTC	1 cut(s)	472
BsrDI	GCAATG	1 cut(s)	1207
BsrFI	RCCGGY	1 cut(s)	31
BsrGI	TGTACA	1 cut(s)	645
BsrI	ACTGG	2 cut(s)	567, 569
BssAI	RCCGGY	1 cut(s)	31
BssECI	CCNNGG	7 cut(s)	53, 392, 508, 801, 915, 1089, 1274
BssNI	GRCGYC	3 cut(s)	293, 879, 1115
BssT1I	CCWWGG	1 cut(s)	508
Bst2UI	CCWGG	3 cut(s)	528, 916, 1275
Bst4CI	ACNGT	4 cut(s)	11, 645, 690, 974
Bst6I	CTCTTC	4 cut(s)	114, 422, 839, 1077
BstACI	GRCGYC	3 cut(s)	293, 879, 1115
BstAUI	TGTACA	1 cut(s)	645
BstC8I	GCNNGC	5 cut(s)	98, 321, 669, 714, 842
BstDEI	CTNAG	6 cut(s)	101, 128, 156, 384, 452, 857
BstF5I	GGATG	3 cut(s)	262, 479, 749
BstFNI	CGCG	1 cut(s)	712
BstH2I	RGCGCY	1 cut(s)	1061
BstHHI	GCGC	1 cut(s)	1060
BstMAI	GTCTC	5 cut(s)	118, 284, 334, 472, 1168
BstMWI	GCNNNNNNNGC	2 cut(s)	1076, 1114
BstNI	CCWGG	3 cut(s)	528, 916, 1275
BstNSI	RCATGY	1 cut(s)	323
BstSCI	CCNGG	7 cut(s)	52, 53, 422, 526, 914, 1079, 1273
BstUI	CGCG	1 cut(s)	712
BstV1I	GCAGC	6 cut(s)	473, 526, 529, 703, 756, 1131
BstX2I	RGATCY	3 cut(s)	530, 565, 1138
BstYI	RGATCY	3 cut(s)	530, 565, 1138
Bsu15I	ATCGAT	1 cut(s)	1128
BsuRI	GGCC	4 cut(s)	412, 507, 596, 615
BsuTUI	ATCGAT	1 cut(s)	1128
BtgZI	GCGATG	1 cut(s)	1254
BtsCI	GGATG	3 cut(s)	262, 479, 749
BtsIMutI	CAGTG	2 cut(s)	560, 1024
BtuMI	TCGCGA	1 cut(s)	712
Cac8I	GCNNGC	5 cut(s)	98, 321, 669, 714, 842
CfoI	GCGC	1 cut(s)	1060
Cfr10I	RCCGGY	1 cut(s)	31
Cfr13I	GGNCC	7 cut(s)	14, 150, 389, 410, 595, 928, 1049
Cfr9I	CCCGGG	1 cut(s)	53
ClaI	ATCGAT	1 cut(s)	1128
CseI	GACGC	2 cut(s)	301, 1123
Csp6I	GTAC	4 cut(s)	7, 195, 646, 809
CspCI	CAANNNNNGTGG	4 cut(s)	18, 53, 883, 918
CviAII	CATG	4 cut(s)	22, 211, 320, 1317
CviQI	GTAC	4 cut(s)	7, 195, 646, 809
DdeI	CTNAG	6 cut(s)	101, 128, 156, 384, 452, 857
EaeI	YGGCCR	2 cut(s)	505, 613
Eam1104I	CTCTTC	4 cut(s)	114, 422, 839, 1077
EarI	CTCTTC	4 cut(s)	114, 422, 839, 1077
Ecl136II	GAGCTC	1 cut(s)	100
Eco130I	CCWWGG	1 cut(s)	508
Eco24I	GRGCYC	1 cut(s)	102
Eco31I	GGTCTC	1 cut(s)	472
Eco47I	GGWCC	5 cut(s)	14, 150, 389, 928, 1049
Eco53kI	GAGCTC	1 cut(s)	100
Eco57I	CTGAAG	3 cut(s)	89, 138, 820
Eco88I	CYCGRG	2 cut(s)	53, 393
EcoICRI	GAGCTC	1 cut(s)	100
EcoO109I	RGGNCCY	2 cut(s)	389, 410
EcoRII	CCWGG	3 cut(s)	526, 914, 1273
EcoT14I	CCWWGG	1 cut(s)	508
EcoT38I	GRGCYC	1 cut(s)	102
ErhI	CCWWGG	1 cut(s)	508
Esp3I	CGTCTC	2 cut(s)	284, 334
FaeI	CATG	4 cut(s)	25, 214, 323, 1320
FaqI	GGGAC	3 cut(s)	163, 402, 1291
FatI	CATG	4 cut(s)	21, 210, 319, 1316
FauI	CCCGC	1 cut(s)	1101
FbaI	TGATCA	1 cut(s)	729
FblI	GTMKAC	3 cut(s)	492, 876, 1085
Fnu4HI	GCNGC	6 cut(s)	462, 540, 543, 717, 770, 1145
FokI	GGATG	3 cut(s)	269, 486, 756
FriOI	GRGCYC	1 cut(s)	102
Fsp4HI	GCNGC	6 cut(s)	462, 540, 543, 717, 770, 1145
FspBI	CTAG	2 cut(s)	329, 1287
GlaI	GCGC	1 cut(s)	1059
GluI	GCNGC	6 cut(s)	462, 540, 543, 717, 770, 1145
GsuI	CTGGAG	1 cut(s)	701
HaeII	RGCGCY	1 cut(s)	1061
HaeIII	GGCC	4 cut(s)	412, 507, 596, 615
HapII	CCGG	4 cut(s)	32, 54, 423, 1080
HgaI	GACGC	2 cut(s)	301, 1123
HhaI	GCGC	1 cut(s)	1060
Hin1I	GRCGYC	3 cut(s)	293, 879, 1115
Hin1II	CATG	4 cut(s)	25, 214, 323, 1320
Hin6I	GCGC	1 cut(s)	1058
HinP1I	GCGC	1 cut(s)	1058
HincII	GTYRAC	2 cut(s)	145, 877
HindII	GTYRAC	2 cut(s)	145, 877
HindIII	AAGCTT	2 cut(s)	354, 887
HinfI	GANTC	7 cut(s)	25, 132, 377, 419, 707, 955, 1325
HpaI	GTTAAC	1 cut(s)	145
HpaII	CCGG	4 cut(s)	32, 54, 423, 1080
HphI	GGTGA	4 cut(s)	615, 670, 739, 1123
Hpy166II	GTNNAC	6 cut(s)	145, 493, 604, 877, 1049, 1086
Hpy188I	TCNGA	6 cut(s)	69, 118, 131, 172, 698, 1037
Hpy188III	TCNNGA	9 cut(s)	103, 182, 587, 680, 711, 824, 883, 959, 1136
Hpy8I	GTNNAC	6 cut(s)	145, 493, 604, 877, 1049, 1086
Hpy99I	CGWCG	2 cut(s)	881, 884
HpyAV	CCTTC	2 cut(s)	208, 569
HpyCH4III	ACNGT	4 cut(s)	11, 645, 690, 974
HpyCH4IV	ACGT	4 cut(s)	343, 636, 879, 1256
HpyCH4V	TGCA	5 cut(s)	319, 335, 1027, 1147, 1240
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1076, 1114
HpyF3I	CTNAG	6 cut(s)	101, 128, 156, 384, 452, 857
HpySE526I	ACGT	4 cut(s)	343, 636, 879, 1256
Hsp92I	GRCGYC	3 cut(s)	293, 879, 1115
Hsp92II	CATG	4 cut(s)	25, 214, 323, 1320
HspAI	GCGC	1 cut(s)	1058
Ksp22I	TGATCA	1 cut(s)	729
KspAI	GTTAAC	1 cut(s)	145
LguI	GCTCTTC	3 cut(s)	114, 422, 1077
LmnI	GCTCC	3 cut(s)	44, 239, 453
Lsp1109I	GCAGC	6 cut(s)	473, 526, 529, 703, 756, 1131
LweI	GCATC	3 cut(s)	322, 435, 629
MaeI	CTAG	2 cut(s)	329, 1287
MaeII	ACGT	4 cut(s)	343, 636, 879, 1256
MaeIII	GTNAC	3 cut(s)	262, 1111, 1222
MboII	GAAGA	9 cut(s)	131, 372, 439, 826, 1064, 1187, 1255, 1258, 1261
MfeI	CAATTG	1 cut(s)	246
MflI	RGATCY	3 cut(s)	530, 565, 1138
MhlI	GDGCHC	2 cut(s)	102, 434
MlsI	TGGCCA	1 cut(s)	507
MluCI	AATT	4 cut(s)	80, 215, 246, 1038
MluNI	TGGCCA	1 cut(s)	507
MlyI	GAGTC	2 cut(s)	126, 1334
MmeI	TCCRAC	1 cut(s)	676
Mox20I	TGGCCA	1 cut(s)	507
MroXI	GAANNNNTTC	1 cut(s)	579
MscI	TGGCCA	1 cut(s)	507
MseI	TTAA	5 cut(s)	144, 312, 846, 951, 1233
MslI	CAYNNNNRTG	2 cut(s)	314, 1315
Msp20I	TGGCCA	1 cut(s)	507
MspA1I	CMGCKG	1 cut(s)	155
MspI	CCGG	4 cut(s)	32, 54, 423, 1080
MspR9I	CCNGG	7 cut(s)	54, 55, 424, 528, 916, 1081, 1275
MunI	CAATTG	1 cut(s)	246
Mva1269I	GAATGC	1 cut(s)	1147
MvaI	CCWGG	3 cut(s)	528, 916, 1275
MvnI	CGCG	1 cut(s)	712
MwoI	GCNNNNNNNGC	2 cut(s)	1076, 1114
NciI	CCSGG	4 cut(s)	54, 55, 424, 1081
NlaIII	CATG	4 cut(s)	25, 214, 323, 1320
NlaIV	GGNNCC	3 cut(s)	151, 390, 567
NmuCI	GTSAC	3 cut(s)	262, 1111, 1222
NruI	TCGCGA	1 cut(s)	712
NspI	RCATGY	1 cut(s)	323
PaeI	GCATGC	1 cut(s)	323
PciSI	GCTCTTC	3 cut(s)	114, 422, 1077
PctI	GAATGC	1 cut(s)	1147
PdmI	GAANNNNTTC	1 cut(s)	579
PfeI	GAWTC	5 cut(s)	25, 377, 419, 707, 955
Pfl23II	CGTACG	1 cut(s)	6
PflMI	CCANNNNNTGG	1 cut(s)	1274
PfoI	TCCNGGA	1 cut(s)	422
PkrI	GCNGC	6 cut(s)	463, 541, 544, 718, 771, 1146
PleI	GAGTC	2 cut(s)	126, 1333
PpsI	GAGTC	2 cut(s)	126, 1333
PpuMI	RGGWCCY	1 cut(s)	389
PshBI	ATTAAT	1 cut(s)	312
Psp124BI	GAGCTC	1 cut(s)	102
Psp1406I	AACGTT	1 cut(s)	636
Psp5II	RGGWCCY	1 cut(s)	389
Psp6I	CCWGG	3 cut(s)	526, 914, 1273
PspGI	CCWGG	3 cut(s)	526, 914, 1273
PspLI	CGTACG	1 cut(s)	6
PspN4I	GGNNCC	3 cut(s)	151, 390, 567
PspPI	GGNCC	7 cut(s)	14, 150, 389, 410, 595, 928, 1049
PspPPI	RGGWCCY	1 cut(s)	389
PsuI	RGATCY	3 cut(s)	530, 565, 1138
RruI	TCGCGA	1 cut(s)	712
RsaI	GTAC	4 cut(s)	8, 196, 647, 810
RsaNI	GTAC	4 cut(s)	7, 195, 646, 809
RseI	CAYNNNNRTG	2 cut(s)	314, 1315
SacI	GAGCTC	1 cut(s)	102
SalI	GTCGAC	1 cut(s)	875
SapI	GCTCTTC	3 cut(s)	114, 422, 1077
SaqAI	TTAA	5 cut(s)	144, 312, 846, 951, 1233
SatI	GCNGC	6 cut(s)	462, 540, 543, 717, 770, 1145
Sau96I	GGNCC	7 cut(s)	14, 150, 389, 410, 595, 928, 1049
SchI	GAGTC	2 cut(s)	126, 1334
ScrFI	CCNGG	7 cut(s)	54, 55, 424, 528, 916, 1081, 1275
SduI	GDGCHC	2 cut(s)	102, 434
SfaNI	GCATC	3 cut(s)	322, 435, 629
SinI	GGWCC	5 cut(s)	14, 150, 389, 928, 1049
SmaI	CCCGGG	1 cut(s)	55
SmiMI	CAYNNNNRTG	2 cut(s)	314, 1315
SmlI	CTYRAG	3 cut(s)	672, 1195, 1322
SmoI	CTYRAG	3 cut(s)	672, 1195, 1322
SphI	GCATGC	1 cut(s)	323
Sse9I	AATT	4 cut(s)	80, 215, 246, 1038
SsiI	CCGC	3 cut(s)	153, 221, 1108
SspI	AATATT	1 cut(s)	965
SspMI	CTAG	2 cut(s)	329, 1287
SstI	GAGCTC	1 cut(s)	102
StyD4I	CCNGG	7 cut(s)	52, 53, 422, 526, 914, 1079, 1273
StyI	CCWWGG	1 cut(s)	508
TaaI	ACNGT	4 cut(s)	11, 645, 690, 974
TaiI	ACGT	4 cut(s)	346, 639, 882, 1259
TaqI	TCGA	7 cut(s)	108, 515, 750, 876, 980, 1010, 1128
TasI	AATT	4 cut(s)	80, 215, 246, 1038
TatI	WGTACW	2 cut(s)	645, 808
TfiI	GAWTC	5 cut(s)	25, 377, 419, 707, 955
Tru1I	TTAA	5 cut(s)	144, 312, 846, 951, 1233
Tru9I	TTAA	5 cut(s)	144, 312, 846, 951, 1233
TscAI	CASTG	2 cut(s)	567, 1024
TseFI	GTSAC	3 cut(s)	262, 1111, 1222
TseI	GCWGC	6 cut(s)	461, 539, 542, 716, 769, 1144
Tsp45I	GTSAC	3 cut(s)	262, 1111, 1222
TspDTI	ATGAA	3 cut(s)	38, 227, 647
TspGWI	ACGGA	8 cut(s)	6, 125, 281, 431, 920, 984, 1092, 1241
TspMI	CCCGGG	1 cut(s)	53
TspRI	CASTG	2 cut(s)	567, 1024
Van91I	CCANNNNNTGG	1 cut(s)	1274
VpaK11BI	GGWCC	5 cut(s)	14, 150, 389, 928, 1049
VspI	ATTAAT	1 cut(s)	312
XapI	RAATTY	1 cut(s)	215
XceI	RCATGY	1 cut(s)	323
XmaI	CCCGGG	1 cut(s)	53
XmiI	GTMKAC	3 cut(s)	492, 876, 1085
XmnI	GAANNNNTTC	1 cut(s)	579
XspI	CTAG	2 cut(s)	329, 1287
ZraI	GACGTC	1 cut(s)	880

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.