Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006876

Physical Location & Seq

Genomic Coordinates Reverse (-)

66681111 .. 66682153

Gene Structure 1043 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0537700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGATCATCACATAGAGGTGTTCCTGAAGAGGCTCTCCTACATCGCCCTGGCCATCGGAACCCTCACCTTCCTCCTCCTCATCCTCGAAGTCCCCGACACCTGCGTCGCACCCGATTCCCCCCCGAAGCCTCACCTCCGGTTCCCCAAGCACTCCTGCGACCACAAGCCCCGCCAGCACCTCTCCCTCCGCAAGAAGAACAAGCGCCTCTGGTCCTCCGCCACCTGGCAGAACCAGGTCCGTTCATTCTCCCACCTCTTCCACTCCTTCTACCAAATCGGCCTCCTCCACAACCACTCCAAGGTCCTCTGCGTCTCCGCCGGCGCCGGCCACGAGGTCATGGCCCTCTCCCAACTCGGCGTCGATGACGTCACCGGCATTGAGCTCCTGGACTCGCCGCCGCTCGTCAGCCGCGCCGATCCCCACAACCTGCCGTTCTTCGATGACGTGTTTGATTTCGGGTTTAGTGCTAGATTGGAGCTGGCGTTGTTTCCGTCGAGGTTCGCGGCGGAGATGGAGAGGACGGTGAGGCCCGGCGGGGTTTGCGCGGTGGCGGTGGAGGAATGTGGGGATGGGGAGGTCAAGGAGATTGCGGGGTTGTTTAGGAATTCGAGGTTTCTTGGCGCCATGAATGTAACGTTGACTGGGTTGAGAATGACCAGGATTATAATGAGAGTTAAGCATTCACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000394 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006378 GO:0006379 GO:0006388 GO:0006396 GO:0006397 GO:0006399 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0008380 GO:0009791 GO:0009908 GO:0009987 GO:0010228 GO:0010467 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019205 GO:0022414 GO:0031123 GO:0031124 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0051731 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090567 GO:0099402 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CLP1_N CLP1_P Clp1

Protein Analysis

230

Amino Acids

25.77

Weight (kDa)

8.65

Isoelectric Point (pI)

50.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04680 AT3G04680 AT3G04680
fragaria_vesca	FvH4_6g49260 FvH4_6g49260
malus_domestica	MD09G1046200.v1.1 MD09G1046500.v1.1 MD17G1047000.v1.1
prunus_persica	Prupe.3G272100_v2.0.a1
pyrus_communis	pycom09g03810 pycom09g04270 pycom111g03580 pycom111g03600 pycom111g03650 pycom17g04190
rosa_chinensis	RchiOBHm_Chr2g0169161
rosa_laevigata	RLG00000021838
rosa_multiflora	Rmu_ssc0000440.1_g000003
rosa_roxburghii	Rroxscaffold_2G00082380
rosa_rugosa	Rorug02G0537700 Rorug02G0537800
rosa_samantha	Rh2AG609300 Rh2BG622300 Rh2CG591000 Rh2DG633000
rosa_wichuraiana	Rw2G050540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	668
AarI	CACCTGC	1 cut(s)	110
AasI	GACNNNNNNGTC	1 cut(s)	104
AatII	GACGTC	1 cut(s)	372
Acc36I	ACCTGC	2 cut(s)	110, 438
AccB1I	GGYRCC	2 cut(s)	323, 623
AccBSI	CCGCTC	1 cut(s)	403
AccII	CGCG	3 cut(s)	414, 506, 548
AclI	AACGTT	1 cut(s)	638
AclWI	GGATC	2 cut(s)	12, 413
AcoI	YGGCCR	2 cut(s)	51, 328
AcsI	RAATTY	1 cut(s)	607
AcuI	CTGAAG	1 cut(s)	47
AcyI	GRCGYC	4 cut(s)	324, 360, 369, 624
AfiI	CCNNNNNNNGG	2 cut(s)	225, 301
AflIII	ACRYGT	1 cut(s)	447
AjiI	CACGTC	1 cut(s)	448
AjnI	CCWGG	5 cut(s)	48, 224, 234, 387, 659
AluBI	AGCT	2 cut(s)	385, 481
AluI	AGCT	2 cut(s)	385, 481
Alw21I	GWGCWC	1 cut(s)	387
Alw26I	GTCTC	1 cut(s)	319
AlwI	GGATC	2 cut(s)	12, 413
AoxI	GGCC	5 cut(s)	51, 280, 328, 342, 530
ApoI	RAATTY	1 cut(s)	607
AspLEI	GCGC	5 cut(s)	207, 326, 416, 548, 626
AspS9I	GGNCC	5 cut(s)	213, 238, 304, 343, 531
AsuC2I	CCSGG	1 cut(s)	534
AsuHPI	GGTGA	5 cut(s)	58, 125, 364, 538, 678
AvaII	GGWCC	3 cut(s)	213, 238, 304
BalI	TGGCCA	1 cut(s)	53
BanI	GGYRCC	2 cut(s)	323, 623
BanII	GRGCYC	1 cut(s)	387
BauI	CACGAG	1 cut(s)	332
Bbv12I	GWGCWC	1 cut(s)	387
BccI	CCATC	3 cut(s)	62, 508, 566
BceAI	ACGGC	1 cut(s)	418
BciT130I	CCWGG	5 cut(s)	50, 226, 236, 389, 661
BcnI	CCSGG	1 cut(s)	534
BcoDI	GTCTC	1 cut(s)	319
BfaI	CTAG	1 cut(s)	471
BfoI	RGCGCY	3 cut(s)	208, 327, 627
BfuAI	ACCTGC	2 cut(s)	110, 438
BisI	GCNGC	4 cut(s)	398, 401, 412, 507
BlsI	GCNGC	4 cut(s)	399, 402, 413, 508
Bme1390I	CCNGG	6 cut(s)	50, 226, 236, 389, 534, 661
Bme18I	GGWCC	3 cut(s)	213, 238, 304
BmgBI	CACGTC	1 cut(s)	448
BmgT120I	GGNCC	5 cut(s)	213, 238, 304, 343, 531
BmiI	GGNNCC	4 cut(s)	61, 143, 325, 625
BmrFI	CCNGG	6 cut(s)	50, 226, 236, 389, 534, 661
BmrI	ACTGGG	1 cut(s)	654
BmuI	ACTGGG	1 cut(s)	654
BpuMI	CCSGG	1 cut(s)	534
BsaHI	GRCGYC	4 cut(s)	324, 360, 369, 624
BsaJI	CCNNGG	2 cut(s)	48, 300
BsaWI	WCCGGW	1 cut(s)	138
BsaXI	ACNNNNNCTCC	4 cut(s)	281, 311, 470, 500
Bsc4I	CCNNNNNNNGG	2 cut(s)	225, 301
Bse118I	RCCGGY	3 cut(s)	320, 326, 374
Bse1I	ACTGG	1 cut(s)	649
BseBI	CCWGG	5 cut(s)	50, 226, 236, 389, 661
BseDI	CCNNGG	2 cut(s)	48, 300
BseGI	GGATG	2 cut(s)	81, 577
BseLI	CCNNNNNNNGG	2 cut(s)	225, 301
BseNI	ACTGG	1 cut(s)	649
BseRI	GAGGAG	3 cut(s)	65, 68, 275
Bsh1236I	CGCG	3 cut(s)	414, 506, 548
BshFI	GGCC	5 cut(s)	53, 282, 330, 344, 532
BshNI	GGYRCC	2 cut(s)	323, 623
BsiHKAI	GWGCWC	1 cut(s)	387
BsiSI	CCGG	5 cut(s)	139, 321, 327, 375, 534
BslFI	GGGAC	1 cut(s)	77
BslI	CCNNNNNNNGG	2 cut(s)	225, 301
BsmAI	GTCTC	1 cut(s)	319
BsmBI	CGTCTC	1 cut(s)	319
BsmFI	GGGAC	1 cut(s)	77
BsmI	GAATGC	1 cut(s)	682
BsnI	GGCC	5 cut(s)	53, 282, 330, 344, 532
Bsp1286I	GDGCHC	1 cut(s)	387
Bsp143I	GATC	2 cut(s)	4, 418
BspANI	GGCC	5 cut(s)	53, 282, 330, 344, 532
BspFNI	CGCG	3 cut(s)	414, 506, 548
BspLI	GGNNCC	4 cut(s)	61, 143, 325, 625
BspMI	ACCTGC	2 cut(s)	110, 438
BspPI	GGATC	2 cut(s)	12, 413
BspT107I	GGYRCC	2 cut(s)	323, 623
BsrBI	CCGCTC	1 cut(s)	403
BsrFI	RCCGGY	3 cut(s)	320, 326, 374
BsrI	ACTGG	1 cut(s)	649
BssAI	RCCGGY	3 cut(s)	320, 326, 374
BssECI	CCNNGG	2 cut(s)	48, 300
BssMI	GATC	2 cut(s)	4, 418
BssNI	GRCGYC	4 cut(s)	324, 360, 369, 624
BssSI	CACGAG	1 cut(s)	332
BssT1I	CCWWGG	1 cut(s)	300
Bst2BI	CACGAG	1 cut(s)	332
Bst2UI	CCWGG	5 cut(s)	50, 226, 236, 389, 661
Bst4CI	ACNGT	1 cut(s)	526
Bst6I	CTCTTC	2 cut(s)	23, 263
BstACI	GRCGYC	4 cut(s)	324, 360, 369, 624
BstC8I	GCNNGC	4 cut(s)	176, 322, 328, 483
BstF5I	GGATG	2 cut(s)	81, 577
BstFNI	CGCG	3 cut(s)	414, 506, 548
BstH2I	RGCGCY	3 cut(s)	208, 327, 627
BstHHI	GCGC	5 cut(s)	207, 326, 416, 548, 626
BstKTI	GATC	2 cut(s)	7, 421
BstMAI	GTCTC	1 cut(s)	319
BstMBI	GATC	2 cut(s)	4, 418
BstMWI	GCNNNNNNNGC	2 cut(s)	175, 543
BstNI	CCWGG	5 cut(s)	50, 226, 236, 389, 661
BstSCI	CCNGG	6 cut(s)	48, 224, 234, 387, 532, 659
BstUI	CGCG	3 cut(s)	414, 506, 548
BsuRI	GGCC	5 cut(s)	53, 282, 330, 344, 532
BtgZI	GCGATG	1 cut(s)	28
BtrI	CACGTC	1 cut(s)	448
BtsCI	GGATG	2 cut(s)	81, 577
BveI	ACCTGC	2 cut(s)	110, 438
Cac8I	GCNNGC	4 cut(s)	176, 322, 328, 483
CfoI	GCGC	5 cut(s)	207, 326, 416, 548, 626
Cfr10I	RCCGGY	3 cut(s)	320, 326, 374
Cfr13I	GGNCC	5 cut(s)	213, 238, 304, 343, 531
CseI	GACGC	3 cut(s)	94, 301, 349
CsiI	ACCWGGT	1 cut(s)	234
CviAII	CATG	2 cut(s)	340, 628
DinI	GGCGCC	2 cut(s)	325, 625
DpnI	GATC	2 cut(s)	6, 420
DpnII	GATC	2 cut(s)	4, 418
DrdI	GACNNNNNNGTC	1 cut(s)	104
DseDI	GACNNNNNNGTC	1 cut(s)	104
EaeI	YGGCCR	2 cut(s)	51, 328
Eam1104I	CTCTTC	2 cut(s)	23, 263
EarI	CTCTTC	2 cut(s)	23, 263
EciI	GGCGGA	3 cut(s)	208, 307, 524
Ecl136II	GAGCTC	1 cut(s)	385
Eco130I	CCWWGG	1 cut(s)	300
Eco24I	GRGCYC	1 cut(s)	387
Eco47I	GGWCC	3 cut(s)	213, 238, 304
Eco53kI	GAGCTC	1 cut(s)	385
Eco57I	CTGAAG	1 cut(s)	47
EcoICRI	GAGCTC	1 cut(s)	385
EcoO109I	RGGNCCY	1 cut(s)	304
EcoRI	GAATTC	1 cut(s)	607
EcoRII	CCWGG	5 cut(s)	48, 224, 234, 387, 659
EcoT14I	CCWWGG	1 cut(s)	300
EcoT38I	GRGCYC	1 cut(s)	387
EgeI	GGCGCC	2 cut(s)	325, 625
EheI	GGCGCC	2 cut(s)	325, 625
ErhI	CCWWGG	1 cut(s)	300
Esp3I	CGTCTC	1 cut(s)	319
FaeI	CATG	2 cut(s)	343, 631
FaiI	YATR	4 cut(s)	14, 341, 629, 668
FaqI	GGGAC	1 cut(s)	77
FatI	CATG	2 cut(s)	339, 627
FauI	CCCGC	3 cut(s)	179, 530, 586
Fnu4HI	GCNGC	4 cut(s)	398, 401, 412, 507
FokI	GGATG	2 cut(s)	68, 584
FriOI	GRGCYC	1 cut(s)	387
Fsp4HI	GCNGC	4 cut(s)	398, 401, 412, 507
FspBI	CTAG	1 cut(s)	471
GlaI	GCGC	5 cut(s)	206, 325, 415, 547, 625
GluI	GCNGC	4 cut(s)	398, 401, 412, 507
HaeII	RGCGCY	3 cut(s)	208, 327, 627
HaeIII	GGCC	5 cut(s)	53, 282, 330, 344, 532
HapII	CCGG	5 cut(s)	139, 321, 327, 375, 534
HgaI	GACGC	3 cut(s)	94, 301, 349
HhaI	GCGC	5 cut(s)	207, 326, 416, 548, 626
Hin1I	GRCGYC	4 cut(s)	324, 360, 369, 624
Hin1II	CATG	2 cut(s)	343, 631
Hin6I	GCGC	5 cut(s)	205, 324, 414, 546, 624
HinP1I	GCGC	5 cut(s)	205, 324, 414, 546, 624
HincII	GTYRAC	1 cut(s)	642
HindII	GTYRAC	1 cut(s)	642
HinfI	GANTC	2 cut(s)	116, 392
HpaII	CCGG	5 cut(s)	139, 321, 327, 375, 534
HphI	GGTGA	5 cut(s)	58, 125, 364, 538, 678
Hpy166II	GTNNAC	1 cut(s)	642
Hpy188I	TCNGA	1 cut(s)	59
Hpy188III	TCNNGA	1 cut(s)	25
Hpy8I	GTNNAC	1 cut(s)	642
Hpy99I	CGWCG	3 cut(s)	110, 365, 499
HpyAV	CCTTC	2 cut(s)	79, 277
HpyCH4III	ACNGT	1 cut(s)	526
HpyCH4IV	ACGT	3 cut(s)	369, 447, 638
HpyF10VI	GCNNNNNNNGC	2 cut(s)	175, 543
HpySE526I	ACGT	3 cut(s)	369, 447, 638
Hsp92I	GRCGYC	4 cut(s)	324, 360, 369, 624
Hsp92II	CATG	2 cut(s)	343, 631
HspAI	GCGC	5 cut(s)	205, 324, 414, 546, 624
KasI	GGCGCC	2 cut(s)	323, 623
KroI	GCCGGC	2 cut(s)	320, 326
KroNI	GCCGGC	2 cut(s)	322, 328
Kzo9I	GATC	2 cut(s)	4, 418
LmnI	GCTCC	2 cut(s)	390, 478
MabI	ACCWGGT	1 cut(s)	234
MaeI	CTAG	1 cut(s)	471
MaeII	ACGT	3 cut(s)	369, 447, 638
MaeIII	GTNAC	2 cut(s)	370, 634
MalI	GATC	2 cut(s)	6, 420
MbiI	CCGCTC	1 cut(s)	403
MboI	GATC	2 cut(s)	4, 418
MboII	GAAGA	4 cut(s)	40, 208, 250, 430
MhlI	GDGCHC	1 cut(s)	387
MlsI	TGGCCA	1 cut(s)	53
MluCI	AATT	1 cut(s)	607
MluNI	TGGCCA	1 cut(s)	53
Mly113I	GGCGCC	2 cut(s)	324, 624
MlyI	GAGTC	1 cut(s)	386
Mox20I	TGGCCA	1 cut(s)	53
MreI	CGCCGGCG	1 cut(s)	320
MroNI	GCCGGC	2 cut(s)	320, 326
MscI	TGGCCA	1 cut(s)	53
MseI	TTAA	1 cut(s)	678
MslI	CAYNNNNRTG	1 cut(s)	17
Msp20I	TGGCCA	1 cut(s)	53
MspI	CCGG	5 cut(s)	139, 321, 327, 375, 534
MspR9I	CCNGG	6 cut(s)	50, 226, 236, 389, 534, 661
Mva1269I	GAATGC	1 cut(s)	682
MvaI	CCWGG	5 cut(s)	50, 226, 236, 389, 661
MvnI	CGCG	3 cut(s)	414, 506, 548
MwoI	GCNNNNNNNGC	2 cut(s)	175, 543
NaeI	GCCGGC	2 cut(s)	322, 328
NarI	GGCGCC	2 cut(s)	324, 624
NciI	CCSGG	1 cut(s)	534
NdeII	GATC	2 cut(s)	4, 418
NgoMIV	GCCGGC	2 cut(s)	320, 326
NlaIII	CATG	2 cut(s)	343, 631
NlaIV	GGNNCC	4 cut(s)	61, 143, 325, 625
NmeAIII	GCCGAG	1 cut(s)	336
NmuCI	GTSAC	1 cut(s)	370
PaqCI	CACCTGC	1 cut(s)	110
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PctI	GAATGC	1 cut(s)	682
PdiI	GCCGGC	2 cut(s)	322, 328
PfeI	GAWTC	1 cut(s)	116
PfoI	TCCNGGA	1 cut(s)	387
PkrI	GCNGC	4 cut(s)	399, 402, 413, 508
PleI	GAGTC	1 cut(s)	386
PluTI	GGCGCC	2 cut(s)	327, 627
PpsI	GAGTC	1 cut(s)	386
PpuMI	RGGWCCY	1 cut(s)	304
PsiI	TTATAA	1 cut(s)	668
Psp124BI	GAGCTC	1 cut(s)	387
Psp1406I	AACGTT	1 cut(s)	638
Psp5II	RGGWCCY	1 cut(s)	304
Psp6I	CCWGG	5 cut(s)	48, 224, 234, 387, 659
PspGI	CCWGG	5 cut(s)	48, 224, 234, 387, 659
PspN4I	GGNNCC	4 cut(s)	61, 143, 325, 625
PspPI	GGNCC	5 cut(s)	213, 238, 304, 343, 531
PspPPI	RGGWCCY	1 cut(s)	304
RseI	CAYNNNNRTG	1 cut(s)	17
SacI	GAGCTC	1 cut(s)	387
SaqAI	TTAA	1 cut(s)	678
SatI	GCNGC	4 cut(s)	398, 401, 412, 507
Sau3AI	GATC	2 cut(s)	4, 418
Sau96I	GGNCC	5 cut(s)	213, 238, 304, 343, 531
SchI	GAGTC	1 cut(s)	386
ScrFI	CCNGG	6 cut(s)	50, 226, 236, 389, 534, 661
SduI	GDGCHC	1 cut(s)	387
SexAI	ACCWGGT	1 cut(s)	234
SfoI	GGCGCC	2 cut(s)	325, 625
SgrAI	CRCCGGYG	1 cut(s)	320
SinI	GGWCC	3 cut(s)	213, 238, 304
SmiMI	CAYNNNNRTG	1 cut(s)	17
Sse9I	AATT	1 cut(s)	607
SspDI	GGCGCC	2 cut(s)	323, 623
SspMI	CTAG	1 cut(s)	471
SstI	GAGCTC	1 cut(s)	387
StyD4I	CCNGG	6 cut(s)	48, 224, 234, 387, 532, 659
StyI	CCWWGG	1 cut(s)	300
TaaI	ACNGT	1 cut(s)	526
TaiI	ACGT	3 cut(s)	372, 450, 641
TaqI	TCGA	5 cut(s)	87, 363, 441, 497, 611
TasI	AATT	1 cut(s)	607
TauI	GCSGC	4 cut(s)	400, 403, 414, 509
TfiI	GAWTC	1 cut(s)	116
Tru1I	TTAA	1 cut(s)	678
Tru9I	TTAA	1 cut(s)	678
TseFI	GTSAC	1 cut(s)	370
Tsp45I	GTSAC	1 cut(s)	370
TspDTI	ATGAA	2 cut(s)	234, 644
TspGWI	ACGGA	2 cut(s)	230, 483
VpaK11BI	GGWCC	3 cut(s)	213, 238, 304
XapI	RAATTY	1 cut(s)	607
XspI	CTAG	1 cut(s)	471
ZraI	GACGTC	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.