Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0006876

Physical Location & Seq

Genomic Coordinates Reverse (-)

3118437 .. 3119742

Gene Structure 1306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g04270.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGCTTTGCTTCTTCATGCAATTGATACATTCAATGCCAATGTTGTCTTAGTTCTGGGCCAGGAAAAACTTTGGAGCATGATCAGAAATGTACTAAAGAACAAGCCTGGTGTGGACGTTGTAAAACTTAAAAAATCTGGGGGTGTTGTATCCAGGAATGCCAAATTCCGTCAAAAATCCAGGAGTCATAGGATAAGGGAGTATTTCTATGGCCTTGCAAATGATCTCAGCCCACATTCTAATATCGCGAATTTTAGTGACTTTTCTGTCTGTCGGATTGGTGGCGGGCCACAGGCCCCACGTTCAGCTTTGCCAATTGGTGCAGAGCCTGCTGCGGACCCTACAAGATTGGCGCCTGTGAATATTAACCGGGATTTGCTACATACCATTCTTGCTGTTTCATTTGCCAAGGAGCCTGATCAAATTATTTCTAGTAATGTTGCTGGGTTTGTCTTTGTCACAGACGTCGACATTCAGAGGAAGACAATTACGTACCTTGCACCATCGGCGGGTGAGCTTCCAAGCAAGTATTTGACTGCAGGAACCGTGACATGGCTTGAAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000394 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006378 GO:0006379 GO:0006388 GO:0006396 GO:0006397 GO:0006399 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0008380 GO:0009791 GO:0009908 GO:0009987 GO:0010228 GO:0010467 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019205 GO:0022414 GO:0031123 GO:0031124 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0051731 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090567 GO:0099402 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CLP1_N CLP1_P Clp1

Protein Analysis

189

Amino Acids

20.51

Weight (kDa)

9.71

Isoelectric Point (pI)

38.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04680 AT3G04680 AT3G04680
fragaria_vesca	FvH4_6g49260 FvH4_6g49260
malus_domestica	MD09G1046200.v1.1 MD09G1046500.v1.1 MD17G1047000.v1.1
prunus_persica	Prupe.3G272100_v2.0.a1
pyrus_communis	pycom09g03810 pycom09g04270 pycom111g03580 pycom111g03600 pycom111g03650 pycom17g04190
rosa_chinensis	RchiOBHm_Chr2g0169161
rosa_laevigata	RLG00000021838
rosa_multiflora	Rmu_ssc0000440.1_g000003
rosa_roxburghii	Rroxscaffold_2G00082380
rosa_rugosa	Rorug02G0537700 Rorug02G0537800
rosa_samantha	Rh2AG609300 Rh2BG622300 Rh2CG591000 Rh2DG633000
rosa_wichuraiana	Rw2G050540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	266
AatII	GACGTC	1 cut(s)	468
AccB1I	GGYRCC	1 cut(s)	352
AccI	GTMKAC	1 cut(s)	468
AccII	CGCG	1 cut(s)	248
AciI	CCGC	3 cut(s)	285, 335, 509
AcsI	RAATTY	2 cut(s)	164, 250
AcyI	GRCGYC	2 cut(s)	353, 465
AfaI	GTAC	2 cut(s)	93, 494
AfiI	CCNNNNNNNGG	2 cut(s)	509, 552
AgsI	TTSAA	2 cut(s)	34, 560
AjnI	CCWGG	4 cut(s)	60, 106, 152, 179
AluBI	AGCT	2 cut(s)	308, 517
AluI	AGCT	2 cut(s)	308, 517
AlwNI	CAGNNNCTG	1 cut(s)	329
AoxI	GGCC	4 cut(s)	58, 211, 287, 294
ApeKI	GCWGC	1 cut(s)	332
ApoI	RAATTY	2 cut(s)	164, 250
AspLEI	GCGC	1 cut(s)	355
AspS9I	GGNCC	4 cut(s)	58, 287, 295, 337
AsuC2I	CCSGG	1 cut(s)	371
AsuHPI	GGTGA	1 cut(s)	524
AvaII	GGWCC	1 cut(s)	337
BanI	GGYRCC	1 cut(s)	352
BbsI	GAAGAC	1 cut(s)	488
BbvI	GCAGC	1 cut(s)	319
BccI	CCATC	1 cut(s)	511
BciT130I	CCWGG	4 cut(s)	62, 108, 154, 181
BciVI	GTATCC	1 cut(s)	160
BclI	TGATCA	2 cut(s)	81, 418
BcnI	CCSGG	1 cut(s)	371
BfaI	CTAG	1 cut(s)	432
BfmI	CTRYAG	1 cut(s)	537
BfoI	RGCGCY	1 cut(s)	356
BfuI	GTATCC	1 cut(s)	160
BisI	GCNGC	1 cut(s)	333
BlsI	GCNGC	1 cut(s)	334
Bme1390I	CCNGG	5 cut(s)	62, 108, 154, 181, 371
Bme18I	GGWCC	1 cut(s)	337
BmgT120I	GGNCC	4 cut(s)	58, 287, 295, 337
BmiI	GGNNCC	5 cut(s)	297, 339, 354, 414, 544
BmrFI	CCNGG	5 cut(s)	62, 108, 154, 181, 371
BpiI	GAAGAC	1 cut(s)	488
BpuMI	CCSGG	1 cut(s)	371
BsaAI	YACGTR	1 cut(s)	492
BsaHI	GRCGYC	2 cut(s)	353, 465
BsaJI	CCNNGG	1 cut(s)	408
Bsc4I	CCNNNNNNNGG	2 cut(s)	509, 552
BseBI	CCWGG	4 cut(s)	62, 108, 154, 181
BseDI	CCNNGG	1 cut(s)	408
BseLI	CCNNNNNNNGG	2 cut(s)	509, 552
BseMII	CTCAG	1 cut(s)	241
BseXI	GCAGC	1 cut(s)	319
BseYI	CCCAGC	1 cut(s)	443
BsgI	GTGCAG	1 cut(s)	342
Bsh1236I	CGCG	1 cut(s)	248
BshFI	GGCC	4 cut(s)	60, 213, 289, 296
BshNI	GGYRCC	1 cut(s)	352
BsiSI	CCGG	1 cut(s)	370
BslI	CCNNNNNNNGG	2 cut(s)	509, 552
BsmI	GAATGC	1 cut(s)	163
BsnI	GGCC	4 cut(s)	60, 213, 289, 296
Bsp143I	GATC	3 cut(s)	81, 223, 418
Bsp68I	TCGCGA	1 cut(s)	248
BspACI	CCGC	3 cut(s)	285, 335, 509
BspANI	GGCC	4 cut(s)	60, 213, 289, 296
BspCNI	CTCAG	1 cut(s)	240
BspFNI	CGCG	1 cut(s)	248
BspLI	GGNNCC	5 cut(s)	297, 339, 354, 414, 544
BspMAI	CTGCAG	1 cut(s)	541
BspT107I	GGYRCC	1 cut(s)	352
BssECI	CCNNGG	1 cut(s)	408
BssMI	GATC	3 cut(s)	81, 223, 418
BssNI	GRCGYC	2 cut(s)	353, 465
BssT1I	CCWWGG	1 cut(s)	408
Bst2UI	CCWGG	4 cut(s)	62, 108, 154, 181
Bst4CI	ACNGT	1 cut(s)	547
BstACI	GRCGYC	2 cut(s)	353, 465
BstAPI	GCANNNNNTGC	1 cut(s)	329
BstBAI	YACGTR	1 cut(s)	492
BstC8I	GCNNGC	2 cut(s)	287, 330
BstDEI	CTNAG	2 cut(s)	49, 227
BstFNI	CGCG	1 cut(s)	248
BstH2I	RGCGCY	1 cut(s)	356
BstHHI	GCGC	1 cut(s)	355
BstKTI	GATC	3 cut(s)	84, 226, 421
BstMBI	GATC	3 cut(s)	81, 223, 418
BstMWI	GCNNNNNNNGC	2 cut(s)	329, 506
BstNI	CCWGG	4 cut(s)	62, 108, 154, 181
BstSCI	CCNGG	5 cut(s)	60, 106, 152, 179, 369
BstSFI	CTRYAG	1 cut(s)	537
BstSNI	TACGTA	1 cut(s)	492
BstUI	CGCG	1 cut(s)	248
BstV1I	GCAGC	1 cut(s)	319
BstV2I	GAAGAC	1 cut(s)	488
BsuI	GTATCC	1 cut(s)	160
BsuRI	GGCC	4 cut(s)	60, 213, 289, 296
BtuMI	TCGCGA	1 cut(s)	248
Cac8I	GCNNGC	2 cut(s)	287, 330
CaiI	CAGNNNCTG	1 cut(s)	329
CfoI	GCGC	1 cut(s)	355
Cfr13I	GGNCC	4 cut(s)	58, 287, 295, 337
Csp6I	GTAC	2 cut(s)	92, 493
CviAII	CATG	4 cut(s)	17, 79, 552, 564
CviQI	GTAC	2 cut(s)	92, 493
DdeI	CTNAG	2 cut(s)	49, 227
DinI	GGCGCC	1 cut(s)	354
DpnI	GATC	3 cut(s)	83, 225, 420
DpnII	GATC	3 cut(s)	81, 223, 418
DrdI	GACNNNNNNGTC	1 cut(s)	266
DseDI	GACNNNNNNGTC	1 cut(s)	266
Eco105I	TACGTA	1 cut(s)	492
Eco130I	CCWWGG	1 cut(s)	408
Eco47I	GGWCC	1 cut(s)	337
EcoO109I	RGGNCCY	1 cut(s)	295
EcoRII	CCWGG	4 cut(s)	60, 106, 152, 179
EcoT14I	CCWWGG	1 cut(s)	408
EgeI	GGCGCC	1 cut(s)	354
EheI	GGCGCC	1 cut(s)	354
ErhI	CCWWGG	1 cut(s)	408
FaeI	CATG	4 cut(s)	20, 82, 555, 567
FaiI	YATR	7 cut(s)	18, 80, 189, 210, 384, 553, 565
FatI	CATG	4 cut(s)	16, 78, 551, 563
FauI	CCCGC	2 cut(s)	278, 502
FbaI	TGATCA	2 cut(s)	81, 418
FblI	GTMKAC	1 cut(s)	468
Fnu4HI	GCNGC	1 cut(s)	333
Fsp4HI	GCNGC	1 cut(s)	333
FspBI	CTAG	1 cut(s)	432
GlaI	GCGC	1 cut(s)	354
GluI	GCNGC	1 cut(s)	333
GsaI	CCCAGC	1 cut(s)	447
HaeII	RGCGCY	1 cut(s)	356
HaeIII	GGCC	4 cut(s)	60, 213, 289, 296
HapII	CCGG	1 cut(s)	370
HhaI	GCGC	1 cut(s)	355
Hin1I	GRCGYC	2 cut(s)	353, 465
Hin1II	CATG	4 cut(s)	20, 82, 555, 567
Hin6I	GCGC	1 cut(s)	353
HinP1I	GCGC	1 cut(s)	353
HincII	GTYRAC	1 cut(s)	469
HindII	GTYRAC	1 cut(s)	469
HinfI	GANTC	1 cut(s)	184
HpaII	CCGG	1 cut(s)	370
HphI	GGTGA	1 cut(s)	524
Hpy166II	GTNNAC	2 cut(s)	115, 469
Hpy188I	TCNGA	3 cut(s)	86, 276, 477
Hpy188III	TCNNGA	1 cut(s)	247
Hpy8I	GTNNAC	2 cut(s)	115, 469
Hpy99I	CGWCG	1 cut(s)	470
HpyCH4III	ACNGT	1 cut(s)	547
HpyCH4IV	ACGT	4 cut(s)	117, 301, 465, 491
HpyCH4V	TGCA	5 cut(s)	20, 218, 323, 500, 539
HpyF10VI	GCNNNNNNNGC	2 cut(s)	329, 506
HpyF3I	CTNAG	2 cut(s)	49, 227
HpySE526I	ACGT	4 cut(s)	117, 301, 465, 491
Hsp92I	GRCGYC	2 cut(s)	353, 465
Hsp92II	CATG	4 cut(s)	20, 82, 555, 567
HspAI	GCGC	1 cut(s)	353
KasI	GGCGCC	1 cut(s)	352
Ksp22I	TGATCA	2 cut(s)	81, 418
Kzo9I	GATC	3 cut(s)	81, 223, 418
LmnI	GCTCC	2 cut(s)	75, 412
Lsp1109I	GCAGC	1 cut(s)	319
MaeI	CTAG	1 cut(s)	432
MaeII	ACGT	4 cut(s)	117, 301, 465, 491
MaeIII	GTNAC	3 cut(s)	257, 457, 547
MalI	GATC	3 cut(s)	83, 225, 420
MboI	GATC	3 cut(s)	81, 223, 418
MboII	GAAGA	2 cut(s)	5, 493
MfeI	CAATTG	2 cut(s)	21, 315
MluCI	AATT	6 cut(s)	21, 164, 250, 315, 423, 486
Mly113I	GGCGCC	1 cut(s)	353
MlyI	GAGTC	1 cut(s)	193
MmeI	TCCRAC	1 cut(s)	254
MnlI	CCTC	1 cut(s)	471
MseI	TTAA	2 cut(s)	129, 366
MspI	CCGG	1 cut(s)	370
MspR9I	CCNGG	5 cut(s)	62, 108, 154, 181, 371
MunI	CAATTG	2 cut(s)	21, 315
Mva1269I	GAATGC	1 cut(s)	163
MvaI	CCWGG	4 cut(s)	62, 108, 154, 181
MvnI	CGCG	1 cut(s)	248
MwoI	GCNNNNNNNGC	2 cut(s)	329, 506
NarI	GGCGCC	1 cut(s)	353
NciI	CCSGG	1 cut(s)	371
NdeII	GATC	3 cut(s)	81, 223, 418
NlaIII	CATG	4 cut(s)	20, 82, 555, 567
NlaIV	GGNNCC	5 cut(s)	297, 339, 354, 414, 544
NmuCI	GTSAC	3 cut(s)	257, 457, 547
NruI	TCGCGA	1 cut(s)	248
PctI	GAATGC	1 cut(s)	163
PfoI	TCCNGGA	2 cut(s)	152, 179
PkrI	GCNGC	1 cut(s)	334
PleI	GAGTC	1 cut(s)	192
PluTI	GGCGCC	1 cut(s)	356
PpsI	GAGTC	1 cut(s)	192
Ppu21I	YACGTR	1 cut(s)	492
Psp6I	CCWGG	4 cut(s)	60, 106, 152, 179
PspFI	CCCAGC	1 cut(s)	443
PspGI	CCWGG	4 cut(s)	60, 106, 152, 179
PspN4I	GGNNCC	5 cut(s)	297, 339, 354, 414, 544
PspPI	GGNCC	4 cut(s)	58, 287, 295, 337
PstI	CTGCAG	1 cut(s)	541
PstNI	CAGNNNCTG	1 cut(s)	329
RruI	TCGCGA	1 cut(s)	248
RsaI	GTAC	2 cut(s)	93, 494
RsaNI	GTAC	2 cut(s)	92, 493
SalI	GTCGAC	1 cut(s)	467
SaqAI	TTAA	2 cut(s)	129, 366
SatI	GCNGC	1 cut(s)	333
Sau3AI	GATC	3 cut(s)	81, 223, 418
Sau96I	GGNCC	4 cut(s)	58, 287, 295, 337
SchI	GAGTC	1 cut(s)	193
ScrFI	CCNGG	5 cut(s)	62, 108, 154, 181, 371
SetI	ASST	7 cut(s)	120, 304, 310, 468, 494, 498, 519
SfcI	CTRYAG	1 cut(s)	537
SfoI	GGCGCC	1 cut(s)	354
SinI	GGWCC	1 cut(s)	337
SnaBI	TACGTA	1 cut(s)	492
Sse9I	AATT	6 cut(s)	21, 164, 250, 315, 423, 486
SsiI	CCGC	3 cut(s)	285, 335, 509
SspDI	GGCGCC	1 cut(s)	352
SspI	AATATT	1 cut(s)	364
SspMI	CTAG	1 cut(s)	432
StyD4I	CCNGG	5 cut(s)	60, 106, 152, 179, 369
StyI	CCWWGG	1 cut(s)	408
TaaI	ACNGT	1 cut(s)	547
TaiI	ACGT	4 cut(s)	120, 304, 468, 494
TaqI	TCGA	1 cut(s)	468
TasI	AATT	6 cut(s)	21, 164, 250, 315, 423, 486
TatI	WGTACW	1 cut(s)	91
Tru1I	TTAA	2 cut(s)	129, 366
Tru9I	TTAA	2 cut(s)	129, 366
TseFI	GTSAC	3 cut(s)	257, 457, 547
TseI	GCWGC	1 cut(s)	332
Tsp45I	GTSAC	3 cut(s)	257, 457, 547
TspDTI	ATGAA	2 cut(s)	5, 390
TspGWI	ACGGA	1 cut(s)	158
VpaK11BI	GGWCC	1 cut(s)	337
XapI	RAATTY	2 cut(s)	164, 250
XmiI	GTMKAC	1 cut(s)	468
XspI	CTAG	1 cut(s)	432
ZraI	GACGTC	1 cut(s)	466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.